mRNA_E-fasciculatus_F_contig12801.2121.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig12801.2121.1
Unique Name	mRNA_E-fasciculatus_F_contig12801.2121.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig12801.2121.1 vs. uniprot
Match: D7FLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ4_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 8.060e-76
Identity = 140/200 (70.00%), Postives = 145/200 (72.50%), Query Frame = 1

Query:    1 AAARCRRKRXXXXXXXXXXXXAARVTGLASCRHP---RPPCTPLLIMXXXXXXXXXXXXXXXXXSGRGSDSSVPWWYPSRDWGLPSDAAAGSGXXXEAGGSGGWTGLGVPRRRFREEAKLAEEFVASWVASGLAEDEERRGGDVMMPACDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQLVYTEVDPAEAAEKRER 591
            AAARCRRKR            A   T +AS RHP     P  PLL+                    RGS+SSVPWWYPSRDWGLPSDA  GSGXXX       WTGLGVPRRRFREEAKLAEEFVASWVASGLAE+EERRGG V+MPACDVLEAGNHTLRRLGASVDRCASPYY LPEIHPSQLVYTEVDPAEAAEKRER
Sbjct:   18 AAARCRRKRSRKRIPTT----APPPTAVASWRHPPLDALPRNPLLVALVVVALLGSVADAGGGSGNRGSESSVPWWYPSRDWGLPSDAV-GSGXXXXX-XXXXWTGLGVPRRRFREEAKLAEEFVASWVASGLAEEEERRGGSVVMPACDVLEAGNHTLRRLGASVDRCASPYYALPEIHPSQLVYTEVDPAEAAEKRER 211

[Close]

BLAST of mRNA_E-fasciculatus_F_contig12801.2121.1 vs. uniprot
Match: A0A6H5K6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z1_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 9.510e-73
Identity = 135/201 (67.16%), Postives = 143/201 (71.14%), Query Frame = 1

Query:    1 AAARCRRKRXXXXXXXXXXXXAARVTGLASCRHP---RPPCTPLLIMXXXXXXXXXXXXXXXXXSGRGSDSSVPWWYPSRDWGLPSDAAAGSGXXXEAGGSGGWTGLGVPRRRFREEAKLAEEFVASWVASGLAEDEERRGGDVMMPACDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQLVYTEVDPAEAAEKRERE 594
            A ARCRRKR                T +AS RHP     P +PLL+                    RG DSSVPWWYPSRDWGLPSDA  GSGXXX       WTGLGVPRRRFREEAKLAE+ VASWVASGLAE+EER+GG ++MP CDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQLVYTEVDPAEAAEKRERE
Sbjct:   13 ATARCRRKRSRKRIPTT----VVTTTAVASWRHPPLDALPRSPLLVGVVVVALLGSVADAVGGSGRRGGDSSVPWWYPSRDWGLPSDAV-GSGXXXXX-XXXXWTGLGVPRRRFREEAKLAEDSVASWVASGLAEEEERQGGSMVMPTCDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQLVYTEVDPAEAAEKRERE 207

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig12801.2121.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig12801.2121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FLZ4_ECTSI	8.060e-76	70.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K6Z1_9PHAE	9.510e-73	67.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig12801	contig	E-fasciculatus_F_contig12801:228..3414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	768
Cds size	768
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig12801.2121.1	prot_E-fasciculatus_F_contig12801.2121.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig12801 228..3414 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927785.8506806-CDS-E-fasciculatus_F_contig12801:227..562	1622927785.8506806-CDS-E-fasciculatus_F_contig12801:227..562	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 228..562 +
1695995693.3450475-CDS-E-fasciculatus_F_contig12801:227..562	1695995693.3450475-CDS-E-fasciculatus_F_contig12801:227..562	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 228..562 +
1622927785.8650339-CDS-E-fasciculatus_F_contig12801:1900..2061	1622927785.8650339-CDS-E-fasciculatus_F_contig12801:1900..2061	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 1901..2061 +
1695995693.3589118-CDS-E-fasciculatus_F_contig12801:1900..2061	1695995693.3589118-CDS-E-fasciculatus_F_contig12801:1900..2061	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 1901..2061 +
1622927785.875128-CDS-E-fasciculatus_F_contig12801:2796..2843	1622927785.875128-CDS-E-fasciculatus_F_contig12801:2796..2843	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 2797..2843 +
1695995693.3681986-CDS-E-fasciculatus_F_contig12801:2796..2843	1695995693.3681986-CDS-E-fasciculatus_F_contig12801:2796..2843	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 2797..2843 +
1622927785.8850381-CDS-E-fasciculatus_F_contig12801:3189..3414	1622927785.8850381-CDS-E-fasciculatus_F_contig12801:3189..3414	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 3190..3414 +
1695995693.376141-CDS-E-fasciculatus_F_contig12801:3189..3414	1695995693.376141-CDS-E-fasciculatus_F_contig12801:3189..3414	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12801 3190..3414 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig12801:228..3414+
coding sequence from alignment at E-fasciculatus_F_contig12801:228..3414+

protein sequence of mRNA_E-fasciculatus_F_contig12801.2121.1

>prot_E-fasciculatus_F_contig12801.2121.1 ID=prot_E-fasciculatus_F_contig12801.2121.1|Name=mRNA_E-fasciculatus_F_contig12801.2121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
AAARCRRKRSRKRRPTTTSTAAARVTGLASCRHPRPPCTPLLIMVVVVAL
LGSVAEAGGGSSGRGSDSSVPWWYPSRDWGLPSDAAAGSGGGGEAGGSGG
WTGLGVPRRRFREEAKLAEEFVASWVASGLAEDEERRGGDVMMPACDVLE
AGNHTLRRLGASVDRCASPYYTLPEIHPSQLVYTEVDPAEAAEKREREDR
AAARRKKRQEEAKKKSGKAGGSAGLSSGDGEEDHGDEEEEEEDNFLGIFL
FLKVS*

mRNA from alignment at E-fasciculatus_F_contig12801:228..3414+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig12801.2121.1 ID=mRNA_E-fasciculatus_F_contig12801.2121.1|Name=mRNA_E-fasciculatus_F_contig12801.2121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3187bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12801:228..3414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCTCGATGCCGACGAAAACGAAGCCGAAAACGAAGACCCACCAC
CACCAGCACTGCAGCAGCAAGAGTAACAGGCCTGGCGTCTTGTCGACATC
CCAGGCCTCCGTGCACCCCCCTCCTTATCATGGTGGTGGTAGTGGCACTG
CTGGGGTCTGTCGCAGAAGCCGGCGGCGGCAGCAGCGGAAGGGGTAGTGA
TAGCAGCGTGCCTTGGTGGTATCCTTCGAGAGACTGGGGACTGCCTTCCG
ATGCCGCCGCCGGCAGTGGTGGGGGGGGCGAGGCGGGGGGAAGCGGAGGT
TGGACGGGGCTGGGGGTCCCCCGACGACGATTCAGGTACAGTGGCGGCTG
CGGTTTTAAGAGAGGTTATGTAAGAGAAAGTACCGATTGAAGAGCGTCAA
ACTGGCTTTTCACGACCATGAGTAATACATACATTGCACACAGCTACGGT
TTGAAAGAGAAGAACCGGATTTAAGAGAGCAATACTGGCGTTACCGACCC
TTTCTCAAACCATAGCCGCCACTCCTGTACCGACTCGTGCAGCTGCTGTA
TGGGGGTCATGTTGAGAAGGGAAGATATTACCGTTGTAACGGGCACGCGT
AAGAACGTGACCGTTACATGCGCCTCAGTTGTCGATGTTTTCTCCACACG
TTACAAGCGACACTCTTGTTCTGGTCTCTTGAGTCTTGAGACCCTCCCGG
CGTTCGCTCTCCCGTACCGAGCCTAGACGGTTCGGGCCAACATTCTTGCG
GGTGACCGGCTCTTGTACAAATTCTCGTACCAGCTAGCTCTAACACAACA
ATGCCTGGGAATACGTTGTAGCCAACCCTCCCCTTAAACGGTTCAGATAC
AGCAGCTAGCGCCCTTTGGCGCTTGAGAGCTTGGCAGTTGAGAAATTTGG
TGTGGAAGAACTCAACACGCAAGAACTTGAGCACGATTTGTGAGCCCGGT
CTATATAGCGACCATTTCTAGCCTACCCCTAGCAACTATTGTAATGGTAA
CCCCAGCCTCGGCCAAATCTACCAAATCTACCAAATCTACCAAATCTACC
AAATCTACTGTCGAGGTTCTTCTGTGCGGACGCTAACTGTGGCAGTACAC
AGAACTACGCAAAGGAGCTGTGTAGCCCCTTCGCGATTGGCGGCCGCATG
ACAGTCCTGAGCCTCGGTGGGCCGCTCCCGTGTATTGTCGTGGCTCCGAT
AGAAGGGGGTGGTGTGACAAGGGCCCTGGACCCTCCCTCCTGTACCGAAC
TTTTGAGGGTCCCAAACTGTACTTCAGCCGGTTTGAGTCCGTGACAACCG
ATTTGACCCTCTTGTGTCGGAACCCCCTCTTGTACCGGAAAAAGAGGGTA
CTCAACTAGTATACTTAGTGGGTCAAGTCCGTGACATCCGATATTGCCTC
CCCAAAACCAAACAATAAATAATTGCCTACAAACAGAAACAGTCCCAAAC
CCAAAAACAAAAACCAACCCAAACCCAAAACAAAAACAATTAGTTAAATA
AAACACACCCTATAATTTATAGTACCGGGATGTATTTTTCGACCCTCTCA
CATCGGAGTCCCCTCTCGTATGGTGTCCTATTATATTGGAGCCCGGCCTT
GGAGGGAAGGTACTGCTGTGTCCCCTTACATCGGAGCCACGATTGCTGTG
CCGCCGTTCCCTGTTGAGCGCAGGGAGGAGGCGAAGCTAGCCGAGGAGTT
CGTTGCGAGTTGGGTGGCGTCTGGCCTTGCGGAGGACGAGGAGCGGCGAG
GGGGCGACGTGATGATGCCCGCGTGCGACGTGCTCGAGGCGGGCAACCAC
ACCCTCAGGAGGCTTGGCGCGAGCGTGGACAGATGTGAGAAACGACGGCC
TACACCTGAACGATTCCTCCTCCTGTTGATGTTGTCGTTGTTGCGGCTGC
TGCCCCTTTGTTTGGGTGCAGCAACCTCGCCCGAAGCCGAAAGTTGCCTC
AACACCTTCATTGCGTACAGACATGAGGGAAGAACCCCACGCGTCATGCC
CATTACACCCATATCATGATACACGTAACCCCCCGGAGACCCCGTAGGTC
ACTACGCTGCCGAGCACCCCCACATGGTCGGTGTGCAAGAATGGTAGAGT
CAATGCAGGACCGTCCAACTAGAAGGCTAGAAGGGGATACCAGGGGTGGC
GTTTCAACTTTCTCAACTTCCGTGTGCCGCTCGGTGTACGAGTGTAAGAA
TGCTAGCCCCAGAACAGAACCAAAAGAGAATGGGTAGAATAACGCATACG
AGGTGGTGTTGAACTCCTGTGACAGCACATTTTGTCTCCACCAGATCGCT
TGGCGAAACGTCTTGGGATCGCCGTGATGGGGGAGGTGCTGTAGGGTTGC
GAGGCCACGCATGCAACGCTTGGAGTAACACATGTTTGGAGGGGCTTGCT
CTTCGTTGATCCAGTCGTTTGCGTTGGCAACGATCCAGGTAACTGTGTAC
CAAGCGGGTGTCATGAAAGGAAGAAAGCAGTGGTATCTATGTGCAACGAA
AGGAATGATCCAATTTTTTTTTAATATTTGGGTGCTTGTGTCGTCTCTTC
TTTCTTTTGCTTGTTCCAGGCGCCTCGCCCTACTACACCCTGCCCGAGAT
TCACCCCAGCCAACTGGTGAGGATGTCGACAGAGGGAGAGATAAGAGATG
GGTCGATTGCACGGGGTTTGTGTACTTGCTGTATTCGTGATGGTGTTTTT
TTTCTATGTGTATACTATAGGTACAGGGACTCGCACGGTCAAGTGTTTGA
TCAGTACGGACAGATGAAGGTACTGGGTAGAGAGATCGGAATGTTTTTTT
TATTGTGAAGACAACAATAAACAAATAGAAGCATACCGTGTTATTCCACC
CTTCCTCTGTTCGTGGTACGATGGTGTTTTGTTTTTCCCGTGTGTGCAGC
AGGATAGGAGTTTTTTACCATGGCATTTCCCTCGCTCTTTGCGGTATTAT
TTTTTTGTGAAGGTGTATACCGAGGTGGATCCCGCAGAAGCAGCGGAGAA
GCGGGAGAGGGAAGACCGAGCAGCGGCTCGCCGCAAGAAGAGGCAAGAAG
AAGCCAAGAAGAAGAGCGGGAAGGCAGGGGGGAGCGCAGGGCTATCCTCG
GGTGATGGGGAAGAAGACCACGGGGACGAGGAGGAGGAGGAGGAGGATAA
CTTTCTGGGAATTTTCCTATTTCTCAAGGTGAGCTAG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12801:228..3414+

>mRNA_E-fasciculatus_F_contig12801.2121.1 ID=mRNA_E-fasciculatus_F_contig12801.2121.1|Name=mRNA_E-fasciculatus_F_contig12801.2121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12801:228..3414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCTCGATGCCGACGAAAACGAAGCCGAAAACGAAGACCCACCAC
CACCAGCACTGCAGCAGCAAGAGTAACAGGCCTGGCGTCTTGTCGACATC
CCAGGCCTCCGTGCACCCCCCTCCTTATCATGGTGGTGGTAGTGGCACTG
CTGGGGTCTGTCGCAGAAGCCGGCGGCGGCAGCAGCGGAAGGGGTAGTGA
TAGCAGCGTGCCTTGGTGGTATCCTTCGAGAGACTGGGGACTGCCTTCCG
ATGCCGCCGCCGGCAGTGGTGGGGGGGGCGAGGCGGGGGGAAGCGGAGGT
TGGACGGGGCTGGGGGTCCCCCGACGACGATTCAGGCAGCAGCTCGATGC
CGACGAAAACGAAGCCGAAAACGAAGACCCACCACCACCAGCACTGCAGC
AGCAAGAGTAACAGGCCTGGCGTCTTGTCGACATCCCAGGCCTCCGTGCA
CCCCCCTCCTTATCATGGTGGTGGTAGTGGCACTGCTGGGGTCTGTCGCA
GAAGCCGGCGGCGGCAGCAGCGGAAGGGGTAGTGATAGCAGCGTGCCTTG
GTGGTATCCTTCGAGAGACTGGGGACTGCCTTCCGATGCCGCCGCCGGCA
GTGGTGGGGGGGGCGAGGCGGGGGGAAGCGGAGGTTGGACGGGGCTGGGG
GTCCCCCGACGACGATTCAGGGAGGAGGCGAAGCTAGCCGAGGAGTTCGT
TGCGAGTTGGGTGGCGTCTGGCCTTGCGGAGGACGAGGAGCGGCGAGGGG
GCGACGTGATGATGCCCGCGTGCGACGTGCTCGAGGCGGGCAACCACACC
CTCAGGAGGCTTGGCGCGAGCGTGGACAGATGGAGGAGGCGAAGCTAGCC
GAGGAGTTCGTTGCGAGTTGGGTGGCGTCTGGCCTTGCGGAGGACGAGGA
GCGGCGAGGGGGCGACGTGATGATGCCCGCGTGCGACGTGCTCGAGGCGG
GCAACCACACCCTCAGGAGGCTTGGCGCGAGCGTGGACAGATGCGCCTCG
CCCTACTACACCCTGCCCGAGATTCACCCCAGCCAACTGGCGCCTCGCCC
TACTACACCCTGCCCGAGATTCACCCCAGCCAACTGGTGTATACCGAGGT
GGATCCCGCAGAAGCAGCGGAGAAGCGGGAGAGGGAAGACCGAGCAGCGG
CTCGCCGCAAGAAGAGGCAAGAAGAAGCCAAGAAGAAGAGCGGGAAGGCA
GGGGGGAGCGCAGGGCTATCCTCGGGTGATGGGGAAGAAGACCACGGGGA
CGAGGAGGAGGAGGAGGAGGATAACTTTCTGGGAATTTTCCTATTTCTCA
AGGTGAGCTAGGTGTATACCGAGGTGGATCCCGCAGAAGCAGCGGAGAAG
CGGGAGAGGGAAGACCGAGCAGCGGCTCGCCGCAAGAAGAGGCAAGAAGA
AGCCAAGAAGAAGAGCGGGAAGGCAGGGGGGAGCGCAGGGCTATCCTCGG
GTGATGGGGAAGAAGACCACGGGGACGAGGAGGAGGAGGAGGAGGATAAC
TTTCTGGGAATTTTCCTATTTCTCAAGGTGAGCTAG