mRNA_E-fasciculatus_F_contig12728.2077.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12728.2077.1
Unique NamemRNA_E-fasciculatus_F_contig12728.2077.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12728.2077.1 vs. uniprot
Match: D7FU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU61_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.760e-30
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:    1 MAARALKVALAA-----PLLLPQGGGGYMLPRQDF-------FSPANYGGVDSPLGLGGKVAPAVLEAAGSLAAXXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVSRS 387
            M ARA +VA  A     PLLLPQ  GG+MLPRQ         FSPAN       L  G KVAP +L  AGSL                SAQPTSADDVGLG GETCDPEDA+C+GD+TDE+TFS+L+W+RTLFVW+SV+R+
Sbjct:    2 MVARAPEVAALAAPLLLPLLLPQEAGGFMLPRQFHHVRQDVSFSPANM-----LLRFGVKVAPVIL-MAGSLPVAASAATAGGSISS-SAQPTSADDVGLGPGETCDPEDADCQGDDTDEITFSMLHWVRTLFVWYSVART 135
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BLAST of mRNA_E-fasciculatus_F_contig12728.2077.1 vs. uniprot
Match: A0A6H5L143_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L143_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.980e-24
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:   70 MLPRQDFF--SPANYGGVDSPLGLGGKVAPAVLEAAGSLAAXXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVSRSVY 393
            MLPRQ        ++   +  L  G KVAP +L  AGSL                SAQPTSADDVGLGS ETCDPEDA+C+GD+TDE+TFS+LYW+RTLFVW+SV+R+ +
Sbjct:    1 MLPRQFHHVRQDVSFSSANMSLRFGVKVAPVIL-VAGSLPVAASSATAGDSISS-SAQPTSADDVGLGSDETCDPEDADCQGDDTDEITFSMLYWVRTLFVWYSVARAAF 108
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BLAST of mRNA_E-fasciculatus_F_contig12728.2077.1 vs. uniprot
Match: D7G955_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G955_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.360e-16
Identity = 66/140 (47.14%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    1 MAARALKVA-LAAPLLLPQGGGGYMLP-------RQDFFSPANYGGVDSPLG--LGGKVAPAVLEAAGSLAAXXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVSRSV 390
            MAARA K A +A  LL  +G  GYM         +QDF +PA   GV+ PL   LG KVA   +  AGSL A               A  +SA+D GLGSGE C  EDAEC GD+ DEMTFSVL WI T F W  V+R++
Sbjct:    6 MAARAAKGAVIAVTLLQMKGADGYMPHHQQIHDVQQDFRNPAICRGVN-PLNQRLGSKVA---VPMAGSLQAASTI-----------AAGSSANDAGLGSGEACGSEDAECDGDDMDEMTFSVLCWICTFFFWCMVARTI 130
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BLAST of mRNA_E-fasciculatus_F_contig12728.2077.1 vs. uniprot
Match: A0A6H5KVM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.320e-15
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:  229 SAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVSRSVYV 396
            SAQPTSA  V LGSGETCD EDAEC GD+TD+MTFSVL WI T FV F V+R++ V
Sbjct:   78 SAQPTSAYHVDLGSGETCDLEDAECHGDDTDKMTFSVLCWICTFFVSFMVARTIIV 133
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12728.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU61_ECTSI1.760e-3055.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L143_9PHAE3.980e-2453.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G955_ECTSI2.360e-1647.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVM4_9PHAE5.320e-1571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12728contigE-fasciculatus_F_contig12728:2327..3811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003640.1
Exons3
Model size396
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12728.2077.1prot_E-fasciculatus_F_contig12728.2077.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12728 2327..3811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.3553717-CDS-E-fasciculatus_F_contig12728:2326..24511622927780.3553717-CDS-E-fasciculatus_F_contig12728:2326..2451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 2327..2451 -
1695995690.894379-CDS-E-fasciculatus_F_contig12728:2326..24511695995690.894379-CDS-E-fasciculatus_F_contig12728:2326..2451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 2327..2451 -
1622927780.374846-CDS-E-fasciculatus_F_contig12728:3144..32901622927780.374846-CDS-E-fasciculatus_F_contig12728:3144..3290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 3145..3290 -
1695995690.9042513-CDS-E-fasciculatus_F_contig12728:3144..32901695995690.9042513-CDS-E-fasciculatus_F_contig12728:3144..3290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 3145..3290 -
1622927780.3902194-CDS-E-fasciculatus_F_contig12728:3686..38111622927780.3902194-CDS-E-fasciculatus_F_contig12728:3686..3811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 3687..3811 -
1695995690.9140756-CDS-E-fasciculatus_F_contig12728:3686..38111695995690.9140756-CDS-E-fasciculatus_F_contig12728:3686..3811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12728 3687..3811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12728.2077.1

>prot_E-fasciculatus_F_contig12728.2077.1 ID=prot_E-fasciculatus_F_contig12728.2077.1|Name=mRNA_E-fasciculatus_F_contig12728.2077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
MAARALKVALAAPLLLPQGGGGYMLPRQDFFSPANYGGVDSPLGLGGKVA
PAVLEAAGSLAAAASATTAGSSITSSSAQPTSADDVGLGSGETCDPEDAE
CKGDNTDEMTFSVLYWIRTLFVWFSVSRSVYV
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mRNA from alignment at E-fasciculatus_F_contig12728:2327..3811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12728.2077.1 ID=mRNA_E-fasciculatus_F_contig12728.2077.1|Name=mRNA_E-fasciculatus_F_contig12728.2077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1485bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12728:2327..3811- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCTCGCGCGCTTAAGGTGGCGCTCGCCGCCCCTCTGCTGCTGCC
GCAGGGGGGCGGCGGTTACATGCTGCCCCGGCAGGACTTTTTCAGCCCTG
CCAATTACGGCGGCGTCGACTCACCGTAAGTGGACCGCTTGAAAAGCAAG
TAGTTTATTCCGGGGTCAGAGTGTGAGCACCGCCGTTGCAGAACGCGTTT
CTACTTGTCTCAAGTATGTAGCACAGGTGCAGTGGGTTTATGGGTGGCAC
CTGGCGGCGACGTAGCGGCATGGAACGTCCAACGCTAGCCCGGGGGTGGG
GGGGGGGGTAGGCTGCCATGAGCACGAAAACCGATCAACCTCGTTGGCGA
GACAATACAAGCAGACCGTGGCTTGTGTGTACGTTCGGGGGCGTTTTTTG
GGGTTCTATCCTAAAGGAATCGTAAAGGAAGGAGTGTCGTGATTAATTCC
AATGCGAGAGGCGTCTCATCCCTTCGTCCTTCTTTCCTGCGCTTGTGCGC
CGCCTGTCTCTGTCATGGCAGTCTCGGTCTCGGGGGCAAGGTCGCGCCGG
CGGTGCTCGAGGCGGCGGGTTCGCTCGCGGCTGCTGCTTCTGCTACTACC
GCAGGCAGTAGCATCACCAGCTCGTCGGCGCAGCCTACGAGCGCCGACGA
TGTCGGTCTCGGGTCAGGTGAGCGCCAGCGCGAGGTTCTCAGATCGTTAC
ATATGTACTCACTTCAAATTTCGCTAGCAAAGCGCGGAGTCGCGTTTTGC
TTTTTCGTTTGGACTTGAACGTCCACCCGTCACCCGGGTCGAGTTGTATC
CATAGGTAGCTGACCACCAGTCCTGCACATATTTGGCATACCTATTTGCC
TCGAGGCTTCGCGCACGGTGGAGCACCCTTACCCTGGTTCTCGCGTCTGG
CTTAGAACCGCTCAAGCGTTCGCATTTTCGGTGGCACAGGGAGACATCGG
CAACTGTCTCTCAACACATGACGTACCCCCTCGTAAAGCCTCGCCAGTTA
TAGCAGTTAGTGCGCGGGCGTTAGACCCTCTGTTTTGTTCGGCCGAGGTT
GTTATATTTTTTCTGGGGTCAGGCTATAAATTGCCGCCAAGGAGTACAAG
TGTATGGATTCGTATAACCGGGCTCACGACATGGTGCCCCAAGTTCTTAT
TTTTTTGGTATAGCCCGGCTCACGACAAGGTGCCCCAAGTTCCTATTTTC
TGAGTTCTTCGAGGCTCAATTCCTTGACTGCCAGGTTCTTTTTAAGTGCG
GCCGCTAGCTGTATCACGCTTTTTGATGGCGCTAGTATGACTGACGTGCG
TGTACTGACTGCCGTGGTTGCCGCGCCTTGTTGCGTTGGGGTGCGGTGTG
GTGTCGCCAGGTGAAACCTGTGACCCGGAGGATGCAGAGTGCAAAGGCGA
CAACACAGACGAGATGACCTTCTCCGTTCTGTACTGGATCCGCACGCTCT
TCGTCTGGTTCTCGGTAAGCCGCAGCGTATATGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12728:2327..3811-

>mRNA_E-fasciculatus_F_contig12728.2077.1 ID=mRNA_E-fasciculatus_F_contig12728.2077.1|Name=mRNA_E-fasciculatus_F_contig12728.2077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12728:2327..3811- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCTCGCGCGCTTAAGGTGGCGCTCGCCGCCCCTCTGCTGCTGCC
GCAGGGGGGCGGCGGTTACATGCTGCCCCGGCAGGACTTTTTCAGCCCTG
CCAATTACGGCGGCGTCGACTCACCATGGCGGCTCGCGCGCTTAAGGTGG
CGCTCGCCGCCCCTCTGCTGCTGCCGCAGGGGGGCGGCGGTTACATGCTG
CCCCGGCAGGACTTTTTCAGCCCTGCCAATTACGGCGGCGTCGACTCACC
TCTCGGTCTCGGGGGCAAGGTCGCGCCGGCGGTGCTCGAGGCGGCGGGTT
CGCTCGCGGCTGCTGCTTCTGCTACTACCGCAGGCAGTAGCATCACCAGC
TCGTCGGCGCAGCCTACGAGCGCCGACGATGTCGGTCTCGGGTCAGTCTC
GGTCTCGGGGGCAAGGTCGCGCCGGCGGTGCTCGAGGCGGCGGGTTCGCT
CGCGGCTGCTGCTTCTGCTACTACCGCAGGCAGTAGCATCACCAGCTCGT
CGGCGCAGCCTACGAGCGCCGACGATGTCGGTCTCGGGTCAGGTGAAACC
TGTGACCCGGAGGATGCAGAGTGCAAAGGCGACAACACAGACGAGATGAC
CTTCTCCGTTCTGTACTGGATCCGCACGCTCTTCGTCTGGTTCTCGGTAA
GCCGCAGCGTATATGTCGTGAAACCTGTGACCCGGAGGATGCAGAGTGCA
AAGGCGACAACACAGACGAGATGACCTTCTCCGTTCTGTACTGGATCCGC
ACGCTCTTCGTCTGGTTCTCGGTAAGCCGCAGCGTATATGTC
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