mRNA_E-fasciculatus_F_contig12727.2076.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI) HSP 1 Score: 510 bits (1314), Expect = 1.990e-177 Identity = 280/292 (95.89%), Postives = 284/292 (97.26%), Query Frame = 1
Query: 1 MMVAARPQRAAQTTPPLVSVSMLLLAATTGAGASTAASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDAMSDVQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAAEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFK 876
MMVAARPQRAAQTTP L+S+SMLL+ GAGAST ASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDA+SDVQPALEELL LYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPA EVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFK
Sbjct: 1 MMVAARPQRAAQTTP-LLSISMLLVVTVAGAGASTVASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDALSDVQPALEELLTLYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFK 291
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Match: A0A6H5JWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB1_9PHAE) HSP 1 Score: 516 bits (1329), Expect = 6.030e-175 Identity = 284/293 (96.93%), Postives = 289/293 (98.63%), Query Frame = 1
Query: 1 MMVAARPQRAAQTTPPLVSVSMLLLAATTGAGASTAASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDAMSDVQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAAEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKV 879
MMVAARPQRAAQTTP L+S+SMLL+AA GAGASTAASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDA+SDVQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVM+GAAGTPA EVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKV
Sbjct: 1 MMVAARPQRAAQTTP-LLSISMLLVAAVAGAGASTAASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDALSDVQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMNGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKV 292
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Match: A0A835ZAQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ3_9STRA) HSP 1 Score: 142 bits (357), Expect = 5.360e-35 Identity = 107/271 (39.48%), Postives = 147/271 (54.24%), Query Frame = 1
Query: 109 ASVMPMAFAGGDLVANLKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQGASN--------LALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRP-DA-MSDVQPALEELLALYEDGVVDPEQ-PKTFVVAVRDCEDGDEA---ELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAAEVARLLQQVSSYA-GPATESVGSNALTASFISSSAAVKCMASFK 876
A+ P + G LV +LK G P+R VSC+G+QG+GK+TLMK+MFG L LLEA SS + V A +LA +D +YNV + DL+R DA ++++Q ALE LA PE PK V AVRD DG+EA ++E + E LQ +W AV+P FA +L DVLDV LP HS A+ EY A L+ + +GA AA+V + LQ + A G ES L A+ ++ +AA + +A+FK
Sbjct: 17 AAAKPTSVLGTSLVESLKAAGATPLRVVSCIGSQGTGKTTLMKSMFGPAVEQETLIADDGLVLLEAESSCSLASRAKAVR----DAAAALAAADVAVYNVFMQDLQRSVDATLTELQMALEPFLAA---SAGQPEGGPKPLVFAVRDF-DGEEASQEQVEAAMTEALQRMWQRAVRPGDFAKKSLEDVLDVSFSFLPSHSLAAGEYAHAAAALRTRLAEGAKSATAADVLKTLQAAPAQATGAPVESTSPAELAAALVAKTAAAQALATFK 279
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Match: A0A058Z096_FONAL (Protein SEY1 homolog n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z096_FONAL) HSP 1 Score: 56.2 bits (134), Expect = 3.410e-5 Identity = 52/201 (25.87%), Postives = 85/201 (42.29%), Query Frame = 1
Query: 157 LKEVGEAPVRTVSCVGAQGSGKSTLMKTMFGQG-----------------------ASNLALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDAMSD--VQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEY 684
LK+ G ++ GAQ +GKSTL+ T+FG G A N +++ + + ++E+ A+ SLA+S + N+L D+ R +A + ++ E L L++ Q + +RD AEL K + E + IW KPEG + LS D+ LPH + E+
Sbjct: 30 LKDAGHE-YNLIAIFGAQSTGKSTLLNTVFGTGFDVMTANRRQQTTKGLWMTTSGTAENTIVMDVEGTDSR-ERGEDLEMERKSALFSLAISQVLLINLLETDIGRSNASNYGLLRTVFEVNLGLFQSTSA---QKTLLLFVIRDHYGTPVAELSKTLEEDMNQIWEGIRKPEGLEDAKLSQYFDLAFTALPHKLIQAAEF 225
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Match: W6KNT0_9TRYP (GB1/RHD3-type G domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KNT0_9TRYP) HSP 1 Score: 55.1 bits (131), Expect = 8.400e-5 Identity = 52/219 (23.74%), Postives = 91/219 (41.55%), Query Frame = 1
Query: 175 APVRTVSCVGAQGSGKSTLMKTMFG-----------QGASNLALLEARSSAAFVPETNEVEVGAGQAMV-----------------------SLAVSDATIYNVLVHDLRRPDA--MSDVQPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMD 723
A V +GAQ SGKSTL+ +F +G + + +R+ ++V GA +V +L+++D I N+ D+ R +A +S ++ E L L+ + ++ T +V +RD +GD + + IW VKP FA S+++D+ K F +PH +E+ L L++ D
Sbjct: 44 ANYHVVGVLGAQSSGKSTLLNYLFKTQFQMLDESVRRGQTTKGVFLSRADLGSGASDSQVSTGAPLLVVDFEGTDGLERGEDQSFERQLSLFALSMADTLILNMWAVDVGRFNAANLSLLRTIFEINLQLFSHEGYEKDEKPTLLVVLRDFTEGDLKPSLVTLQKSFDTIWENVVKPPRFADSSIADLFSFKYFAMPHLKLQKNEFTLSVSELQSWFCD 262 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12727.2076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12727.2076.1 >prot_E-fasciculatus_F_contig12727.2076.1 ID=prot_E-fasciculatus_F_contig12727.2076.1|Name=mRNA_E-fasciculatus_F_contig12727.2076.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=294bp MMVAARPQRAAQTTPPLVSVSMLLLAATTGAGASTAASVMPMAFAGGDLVback to top mRNA from alignment at E-fasciculatus_F_contig12727:374..3109- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12727.2076.1 ID=mRNA_E-fasciculatus_F_contig12727.2076.1|Name=mRNA_E-fasciculatus_F_contig12727.2076.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12727:374..3109- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12727:374..3109- >mRNA_E-fasciculatus_F_contig12727.2076.1 ID=mRNA_E-fasciculatus_F_contig12727.2076.1|Name=mRNA_E-fasciculatus_F_contig12727.2076.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1764bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12727:374..3109- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |