mRNA_E-fasciculatus_F_contig10214.205.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10214.205.1
Unique NamemRNA_E-fasciculatus_F_contig10214.205.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: D7FHE4_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE4_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.250e-40
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL
Sbjct:  117 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 180
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A6H5KR31_9PHAE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR31_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.290e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL
Sbjct:  166 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 229
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A099P2W3_PICKU (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pichia TaxID=4919 RepID=A0A099P2W3_PICKU)

HSP 1 Score: 113 bits (282), Expect = 1.960e-30
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFF+ TV CPWLDGKHVVFG V DG+DVVKK+E+LGSPSG+T+  + I DCGEL
Sbjct:   98 ANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDVVKKVESLGSPSGQTRAEIKITDCGEL 161
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A7S2UZ03_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ03_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.610e-30
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFF+CTVD PWLDGKH VFGSVV+GMDVVK +E +GS SGKT   V +KDCG+L
Sbjct:   71 ANAGPNTNGSQFFICTVDTPWLDGKHTVFGSVVEGMDVVKSIEGVGSGSGKTSKKVIVKDCGQL 134
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A7S4SVH3_9DINO (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SVH3_9DINO)

HSP 1 Score: 111 bits (277), Expect = 2.700e-30
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFFLCTV   WLDGKHVVFGSV DGMDVVKK+EA+GS +GKT  AV I DCG+L
Sbjct:   46 ANAGPNTNGSQFFLCTVKTGWLDGKHVVFGSVTDGMDVVKKIEAVGSQAGKTSKAVVIADCGQL 109
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A7S1D0F5_CYCTE (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0F5_CYCTE)

HSP 1 Score: 114 bits (285), Expect = 2.870e-30
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFF+CTVD PWLDGKHVVFGSVVDG+DVV+K+E+ GSP+G T   + IKDCGE+
Sbjct:  150 ANAGPNTNGSQFFICTVDTPWLDGKHVVFGSVVDGIDVVEKVESYGSPNGATSKTIVIKDCGEI 213
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BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: F6KMJ0_EPICO (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Epinephelus coioides TaxID=94232 RepID=F6KMJ0_EPICO)

HSP 1 Score: 110 bits (275), Expect = 4.190e-30
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFF+CT    WLDGKHVVFGSVV+GMDVVKK+EA+GS SGKT T + I DCG+L
Sbjct:   39 ANAGPNTNGSQFFICTAKTSWLDGKHVVFGSVVEGMDVVKKMEAVGSQSGKTSTKIAIADCGQL 102
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A401PWD0_SCYTO (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PWD0_SCYTO)

HSP 1 Score: 109 bits (273), Expect = 4.500e-30
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFFLCTV+  WLDGKHVVFGSV DGMDVVK++E LGS +GKT   +TI DCG+L
Sbjct:   16 ANAGPNTNGSQFFLCTVNTAWLDGKHVVFGSVTDGMDVVKEMENLGSENGKTSKKITISDCGQL 79
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A7S1DY42_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DY42_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.640e-30
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    4 ANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            ANAGPNTNGSQFF+CT+D PWLD KHVVFG VVDG+DVV K+E++GS SG T  AVT+KDCGEL
Sbjct:  145 ANAGPNTNGSQFFICTIDTPWLDDKHVVFGKVVDGLDVVDKIESVGSQSGATSQAVTVKDCGEL 208
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Match: A0A2A2M309_9BILA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2M309_9BILA)

HSP 1 Score: 108 bits (270), Expect = 1.030e-29
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 KANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPSGKTKTAVTIKDCGEL 195
            +ANAGP TNGSQFF+CTVD PWLD KHVVFG VVDGMDVV+K+E++GS SGK +  VTI DCGE+
Sbjct:    5 QANAGPGTNGSQFFICTVDTPWLDDKHVVFGHVVDGMDVVRKVESMGSRSGKPQKKVTIADCGEI 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10214.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHE4_ECTSI3.250e-40100.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5KR31_9PHAE1.290e-39100.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A099P2W3_PICKU1.960e-3076.56Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pichia... [more]
A0A7S2UZ03_9STRA2.610e-3076.56Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
A0A7S4SVH3_9DINO2.700e-3079.69Peptidyl-prolyl cis-trans isomerase n=5 Tax=Alexan... [more]
A0A7S1D0F5_CYCTE2.870e-3076.56Peptidyl-prolyl cis-trans isomerase n=2 Tax=Cyclop... [more]
F6KMJ0_EPICO4.190e-3076.56Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A401PWD0_SCYTO4.500e-3076.56Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S1DY42_9STRA9.640e-3076.56Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas... [more]
A0A2A2M309_9BILA1.030e-2973.85Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10214contigE-fasciculatus_F_contig10214:89..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1e-30
Seed eggNOG ortholog2880.D7FHE4
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.6717596-CDS-E-fasciculatus_F_contig10214:88..2531622927524.6717596-CDS-E-fasciculatus_F_contig10214:88..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10214 89..253 +
1695995577.9160259-CDS-E-fasciculatus_F_contig10214:88..2531695995577.9160259-CDS-E-fasciculatus_F_contig10214:88..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10214 89..253 +
1622927524.6869116-CDS-E-fasciculatus_F_contig10214:455..4881622927524.6869116-CDS-E-fasciculatus_F_contig10214:455..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10214 456..488 +
1695995577.933011-CDS-E-fasciculatus_F_contig10214:455..4881695995577.933011-CDS-E-fasciculatus_F_contig10214:455..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10214 456..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10214.205.1prot_E-fasciculatus_F_contig10214.205.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10214 89..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10214.205.1

>prot_E-fasciculatus_F_contig10214.205.1 ID=prot_E-fasciculatus_F_contig10214.205.1|Name=mRNA_E-fasciculatus_F_contig10214.205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
KANAGPNTNGSQFFLCTVDCPWLDGKHVVFGSVVDGMDVVKKLEALGSPS
GKTKTAVTIKDCGEL*
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mRNA from alignment at E-fasciculatus_F_contig10214:89..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10214.205.1 ID=mRNA_E-fasciculatus_F_contig10214.205.1|Name=mRNA_E-fasciculatus_F_contig10214.205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=400bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10214:89..488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCGAACGCGGGCCCGAACACGAACGGAAGCCAGTTCTTCTTGTGCAC
CGTGGACTGCCCCTGGCTGGACGGGAAGCACGTCGTGTTTGGCAGCGTTG
TGGACGGCATGGACGTGGTGAAGAAGCTGGAGGCGCTCGGATCGCCCTCC
GGCAAGACCAAGACGGTGAGTGTTGAGACAGGCAGGCAGGCAGGCTGTGT
CCAGAAAGCGGGGAGTTGCCTCAATATGGTGTCGTTTTTTAAGCAGGGAT
GACTGCTGCTTTCCCCAATACTATGTTGTTGCTGACTCCCCACCCGCCCC
GTCTCCACCCTCGCCTGTCCAACAACTTTTGCGCTTCGATGCTGAACGTG
ACGCCTGACCTACACAGGCTGTAACGATCAAGGACTGCGGGGAGCTTTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10214:89..488+

>mRNA_E-fasciculatus_F_contig10214.205.1 ID=mRNA_E-fasciculatus_F_contig10214.205.1|Name=mRNA_E-fasciculatus_F_contig10214.205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10214:89..488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCGAACGCGGGCCCGAACACGAACGGAAGCCAGTTCTTCTTGTGCAC
CGTGGACTGCCCCTGGCTGGACGGGAAGCACGTCGTGTTTGGCAGCGTTG
TGGACGGCATGGACGTGGTGAAGAAGCTGGAGGCGCTCGGATCGCCCTCC
GGCAAGACCAAGACGAAGGCGAACGCGGGCCCGAACACGAACGGAAGCCA
GTTCTTCTTGTGCACCGTGGACTGCCCCTGGCTGGACGGGAAGCACGTCG
TGTTTGGCAGCGTTGTGGACGGCATGGACGTGGTGAAGAAGCTGGAGGCG
CTCGGATCGCCCTCCGGCAAGACCAAGACGGCTGTAACGATCAAGGACTG
CGGGGAGCTTTAAGCTGTAACGATCAAGGACTGCGGGGAGCTTTAA
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