mRNA_E-fasciculatus_F_contig12583.1975.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI) HSP 1 Score: 222 bits (566), Expect = 1.380e-70 Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
IS+WNPK D K KGDAYKTLFIAKISYDTTEKKLRREFEQ+GRIQS+RMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK
Sbjct: 104 ISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 218
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI) HSP 1 Score: 179 bits (454), Expect = 9.390e-54 Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
I +WNPK D A GDAYKTLF+A +SYDT+EKKLRREFEQYG+I+ +R+V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+LVDVERGRTVRNW PRRFGGGLG+SRK
Sbjct: 99 IKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRK 213
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: W7TPI8_9STRA (U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI8_9STRA) HSP 1 Score: 177 bits (449), Expect = 4.910e-53 Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
+ W+PK D KA D YKTL +A++SYDTTEKKLRREFEQYG IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK
Sbjct: 72 VEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A4D9D1Y9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y9_9STRA) HSP 1 Score: 177 bits (448), Expect = 2.530e-52 Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
+ W+PK D KA D YKTL +A++SYDTTEKKLRREFEQYG IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK
Sbjct: 125 VEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVTDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 239
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN) HSP 1 Score: 165 bits (418), Expect = 4.390e-48 Identity = 76/116 (65.52%), Postives = 100/116 (86.21%), Query Frame = 1
Query: 1 ISQWNPK-GDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
IS+W+P+ D + DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+V+DEDGK RGYAF+EYE E DM+ AYK+ DG+KIDGRRV+VDVERGRTVR+W PR+ GGG+G++RK
Sbjct: 100 ISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRGYAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGETRK 215
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL) HSP 1 Score: 164 bits (416), Expect = 6.830e-48 Identity = 75/116 (64.66%), Postives = 100/116 (86.21%), Query Frame = 1
Query: 1 ISQWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
+ +W+P+ D + DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+++DE+GK RGYAFVEYE E DM+VAYK+ DG+KIDGRRV+VDVERGRTVR W PR+FGGG+G++RK
Sbjct: 100 LEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRK 215
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: UPI001600CC35 (U1 small nuclear ribonucleoprotein 70 kDa-like isoform X1 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600CC35) HSP 1 Score: 164 bits (416), Expect = 1.120e-47 Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDED-GKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
+S+W+P D A GDAYKTLF+A+I+YDT+E KLRREFE YG I+S++M +D + GKPRGYAF+EYE+E DM AYK DG+KIDGRRVLVDVERGRTV+ W PRR GGGLG +RK
Sbjct: 86 VSEWDPANDANASGDAYKTLFVARINYDTSESKLRREFEVYGPIRSIKMTKDVNTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRK 201
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD) HSP 1 Score: 163 bits (412), Expect = 2.520e-47 Identity = 75/114 (65.79%), Postives = 98/114 (85.96%), Query Frame = 1
Query: 7 QWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
+W+P D + DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+V+DE+GK RGY FVEYENE D++ AYK DG+KIDGRRV+VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct: 104 KWDPNAEDARKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKVRLVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A5J4Y7K4_9CHLO (U1 small nuclear ribonucleo 70 kDa n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7K4_9CHLO) HSP 1 Score: 164 bits (415), Expect = 4.350e-47 Identity = 74/111 (66.67%), Postives = 97/111 (87.39%), Query Frame = 1
Query: 1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLG 333
+ +WNPK D A+GDA+KTLF+++IS++TTEKKL+REFE+YG I+ LRMVQD GKPRGYAF+EYE++++M+ AYKR DG+K++G+RV+VDVERGRTV NW PRR GGG G
Sbjct: 135 VEEWNPKDDPHAQGDAFKTLFVSRISFETTEKKLKREFEEYGPIKRLRMVQDATGKPRGYAFIEYEHKNNMKEAYKRADGKKVEGKRVVVDVERGRTVPNWRPRRLGGGKG 245
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA) HSP 1 Score: 160 bits (404), Expect = 7.470e-47 Identity = 74/115 (64.35%), Postives = 98/115 (85.22%), Query Frame = 1
Query: 4 SQWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 345
++W+P D + DAYKTLF+ +ISY+TTE++LR EFEQYG ++S+R+V+D +GK RGY FVEYE E+DM+ AYK DG+KIDGRRV+VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct: 104 AKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12583.1975.1 >prot_E-fasciculatus_F_contig12583.1975.1 ID=prot_E-fasciculatus_F_contig12583.1975.1|Name=mRNA_E-fasciculatus_F_contig12583.1975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVback to top mRNA from alignment at E-fasciculatus_F_contig12583:1298..3052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12583.1975.1 ID=mRNA_E-fasciculatus_F_contig12583.1975.1|Name=mRNA_E-fasciculatus_F_contig12583.1975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1755bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12583:1298..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12583:1298..3052- >mRNA_E-fasciculatus_F_contig12583.1975.1 ID=mRNA_E-fasciculatus_F_contig12583.1975.1|Name=mRNA_E-fasciculatus_F_contig12583.1975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12583:1298..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |