mRNA_E-fasciculatus_F_contig1258.1971.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1258.1971.1
Unique NamemRNA_E-fasciculatus_F_contig1258.1971.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1258.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1258contigE-fasciculatus_F_contig1258:2108..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog640511.BC1002_0142
EggNOG OGs2ES8H@1,33JT6@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1062
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1258.1971.1prot_E-fasciculatus_F_contig1258.1971.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1258 2126..2638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927764.6205368-UTR-E-fasciculatus_F_contig1258:2107..21251622927764.6205368-UTR-E-fasciculatus_F_contig1258:2107..2125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1258 2108..2125 +
1695995684.4915857-UTR-E-fasciculatus_F_contig1258:2107..21251695995684.4915857-UTR-E-fasciculatus_F_contig1258:2107..2125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1258 2108..2125 +
1622927764.6460555-UTR-E-fasciculatus_F_contig1258:2638..31691622927764.6460555-UTR-E-fasciculatus_F_contig1258:2638..3169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1258 2639..3169 +
1695995684.5141459-UTR-E-fasciculatus_F_contig1258:2638..31691695995684.5141459-UTR-E-fasciculatus_F_contig1258:2638..3169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1258 2639..3169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927764.6336603-CDS-E-fasciculatus_F_contig1258:2125..26381622927764.6336603-CDS-E-fasciculatus_F_contig1258:2125..2638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1258 2126..2638 +
1695995684.5024538-CDS-E-fasciculatus_F_contig1258:2125..26381695995684.5024538-CDS-E-fasciculatus_F_contig1258:2125..2638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1258 2126..2638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1258.1971.1

>prot_E-fasciculatus_F_contig1258.1971.1 ID=prot_E-fasciculatus_F_contig1258.1971.1|Name=mRNA_E-fasciculatus_F_contig1258.1971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
MATAEYVLASMALIISVKGVVVQYLMSWKSAAAAERPVLLFGFDIEVGWM
VWNCGNGPVSNILLMFKGDRSEWLFPLRMPAVSSGSDFALSSIGHMNVRT
LGAWYEDFSRDIYSTASTDDEHVLRSGQRHPTVEEADVKRALAPIGKLEC
YSSILNQVVGKGGREALEVI*
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mRNA from alignment at E-fasciculatus_F_contig1258:2108..3169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1258.1971.1 ID=mRNA_E-fasciculatus_F_contig1258.1971.1|Name=mRNA_E-fasciculatus_F_contig1258.1971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1258:2108..3169+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTAGATTTCAAGCATCATGGCGACTGCGGAATACGTCCTCGCCTCAAT
GGCGCTGATCATATCTGTAAAAGGCGTCGTTGTACAGTACCTGATGAGCT
GGAAATCTGCGGCGGCGGCAGAACGGCCGGTTCTGTTGTTTGGCTTTGAC
ATTGAAGTCGGCTGGATGGTCTGGAACTGTGGCAATGGTCCGGTTTCAAA
TATCCTGCTCATGTTCAAAGGAGATCGTAGCGAATGGCTATTTCCTCTTC
GAATGCCCGCTGTAAGTTCAGGGTCCGACTTTGCACTGTCTTCCATCGGA
CACATGAACGTGAGGACTTTAGGCGCTTGGTACGAGGACTTTTCCCGTGA
TATTTACTCCACGGCAAGCACTGATGACGAACATGTGTTGAGGTCTGGGC
AACGGCACCCTACTGTAGAGGAAGCTGACGTGAAGCGGGCGTTGGCTCCT
ATTGGTAAGCTTGAATGCTACTCAAGCATTTTAAACCAAGTTGTAGGAAA
GGGCGGTCGAGAGGCTTTGGAAGTTATTTGAAATATTTCCTTGAAGTGAA
AGTATCACGCGAGTTGGCACGGGTCATTTCGCTGCTGTTCGGACTTAATT
GTCACTTTCCGAGCATGCTTTTACGGTTTACGTTAAGCGTTTATGTTGTT
GTTTAGGGTAAGAAGGATTGATCGCCCGTTGTAGCGAAACAAGAGTGGTT
TCCTCTGTTGGGTGATCATGAACGGAGTATGGTGATTCCACACGCCAAAA
CGCAGAATTTTTTTGCAGACCAAGTAGAAATGATCTGTTGGCAAGTCGTT
TTCGGTCTCGTAGCACCACACATCGGTCGAGGGAGTAGGATTCGTTTCGT
GTATGTTTAGGTTGCAGTACCTCCATCGAGGGGTCGTGTCGGGGATGTTG
GCGTGCCTTGGCGTGCCCATGTAGACAGGAGCAAAGTTCTACCCCTTTCG
GGTTTGTTGTTAGTAACATAGTCTACGGCAGTGAGATTGTGTGATCAAGG
AGGTCTGCATGCTGTAGAATCGTATCAAATCAGCATCAGCACTAGCCCGC
AAAACACGTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1258:2108..3169+

>mRNA_E-fasciculatus_F_contig1258.1971.1 ID=mRNA_E-fasciculatus_F_contig1258.1971.1|Name=mRNA_E-fasciculatus_F_contig1258.1971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1258:2108..3169+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACTGCGGAATACGTCCTCGCCTCAATGGCGCTGATCATATCTGT
AAAAGGCGTCGTTGTACAGTACCTGATGAGCTGGAAATCTGCGGCGGCGG
CAGAACGGCCGGTTCTGTTGTTTGGCTTTGACATTGAAGTCGGCTGGATG
GTCTGGAACTGTGGCAATGGTCCGGTTTCAAATATCCTGCTCATGTTCAA
AGGAGATCGTAGCGAATGGCTATTTCCTCTTCGAATGCCCGCTGTAAGTT
CAGGGTCCGACTTTGCACTGTCTTCCATCGGACACATGAACGTGAGGACT
TTAGGCGCTTGGTACGAGGACTTTTCCCGTGATATTTACTCCACGGCAAG
CACTGATGACGAACATGTGTTGAGGTCTGGGCAACGGCACCCTACTGTAG
AGGAAGCTGACGTGAAGCGGGCGTTGGCTCCTATTGGTAAGCTTGAATGC
TACTCAAGCATTTTAAACCAAGTTGTAGGAAAGGGCGGTCGAGAGGCTTT
GGAAGTTATTTGAATGGCGACTGCGGAATACGTCCTCGCCTCAATGGCGC
TGATCATATCTGTAAAAGGCGTCGTTGTACAGTACCTGATGAGCTGGAAA
TCTGCGGCGGCGGCAGAACGGCCGGTTCTGTTGTTTGGCTTTGACATTGA
AGTCGGCTGGATGGTCTGGAACTGTGGCAATGGTCCGGTTTCAAATATCC
TGCTCATGTTCAAAGGAGATCGTAGCGAATGGCTATTTCCTCTTCGAATG
CCCGCTGTAAGTTCAGGGTCCGACTTTGCACTGTCTTCCATCGGACACAT
GAACGTGAGGACTTTAGGCGCTTGGTACGAGGACTTTTCCCGTGATATTT
ACTCCACGGCAAGCACTGATGACGAACATGTGTTGAGGTCTGGGCAACGG
CACCCTACTGTAGAGGAAGCTGACGTGAAGCGGGCGTTGGCTCCTATTGG
TAAGCTTGAATGCTACTCAAGCATTTTAAACCAAGTTGTAGGAAAGGGCG
GTCGAGAGGCTTTGGAAGTTATTTGA
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