prot_E-fasciculatus_F_contig12572.1967.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12572.1967.1
Unique Nameprot_E-fasciculatus_F_contig12572.1967.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length171
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: D8LEF5_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF5_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 3.890e-68
Identity = 144/170 (84.71%), Postives = 150/170 (88.24%), Query Frame = 0 
Query:    1 EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGGGDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGAMLGLVLLGAMVGAFATFLLIRSKASXXXXXXXXXXXXXXXXXXXXXXXXXGWMPAVFSSGYDTIGQQSLP 170
            EKNEPASKYWSFSMAVEHGFID DFP+DACVHPPA DWAEPL TDGS  GGDA L AAQAPSGVTARVDGNAAAAVGVS+SPEEA+ GSQ+GASS  PGAMLGLVLLGAM GA ATFLL+R KA+   XXXXXXXXXXXXXXXXXX    GWMPAVFSSGYDTIGQQSLP
Sbjct:  429 EKNEPASKYWSFSMAVEHGFIDLDFPNDACVHPPATDWAEPLGTDGSGSGGDANLVAAQAPSGVTARVDGNAAAAVGVSHSPEEAQRGSQEGASS--PGAMLGLVLLGAMAGALATFLLVRRKAASQGXXXXXXXXXXXXXXXXXX----GWMPAVFSSGYDTIGQQSLP 592
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: A0A6H5JTP7_9PHAE (GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP7_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.370e-59
Identity = 113/157 (71.97%), Postives = 118/157 (75.16%), Query Frame = 0 
Query:    1 EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGGGDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGAMLGLVLLGAMVGAFATFLLIRSKASXXXXXXXXXXXXXXXXXXXXXXXXXGWMPAVF 157
            EKNEPASKYWSFSMAVEHGFIDTDFP+DAC+HPPA DWAEPL TDGS  GGDA LAAAQAPSGVTARVDGNAAAAV VSNSPEE   GSQ+GASS  PGAMLGLVLLGAM GA ATFLL+R KA+                         GWMPAVF
Sbjct:  249 EKNEPASKYWSFSMAVEHGFIDTDFPEDACIHPPATDWAEPLGTDGSGSGGDANLAAAQAPSGVTARVDGNAAAAVEVSNSPEEPMRGSQKGASS--PGAMLGLVLLGAMAGALATFLLVRRKAASQGASASASGGAEKRGGNRGA----GWMPAVF 399
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: A0A836CCQ8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.290e-8
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0 
Query:    2 KNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEP 41
            K++P++ +WSF +AV  G+IDT +P DAC+HPPA DWA P
Sbjct:  554 KSDPSAAFWSFKLAVHKGYIDTRYPSDACMHPPAEDWAVP 593
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEF5_ECTSI3.890e-6884.71Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A6H5JTP7_9PHAE1.370e-5971.97GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836CCQ8_9STRA4.290e-857.50Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..99
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 121..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..120
NoneNo IPR availableTMHMMTMhelixcoord: 98..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12572contigE-fasciculatus_F_contig12572:2202..3947 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12572.1967.1mRNA_E-fasciculatus_F_contig12572.1967.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12572 2202..3947 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12572.1967.1 ID=prot_E-fasciculatus_F_contig12572.1967.1|Name=mRNA_E-fasciculatus_F_contig12572.1967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGG
GDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGA
MLGLVLLGAMVGAFATFLLIRSKASSQEAAAAAAAAASGGAENGGGNRGG
GWMPAVFSSGYDTIGQQSLP*
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