mRNA_E-fasciculatus_F_contig10203.195.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10203.195.1
Unique NamemRNA_E-fasciculatus_F_contig10203.195.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10203.195.1 vs. uniprot
Match: A0A6H5KJP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.250e-7
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  239 F*SREGSSRPFPSSTVLTLKFGTHESFSAIFRFRVDV 349
            F SREGSSRPF  STVLT KFGTHES SAIFRF   +
Sbjct:   14 FLSREGSSRPFTPSTVLTSKFGTHESLSAIFRFHPHI 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10203.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJP0_9PHAE1.250e-775.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10203contigE-fasciculatus_F_contig10203:1667..2326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008750.2
Exons1
Model size660
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.6902885-UTR-E-fasciculatus_F_contig10203:1666..18371622927523.6902885-UTR-E-fasciculatus_F_contig10203:1666..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10203 1667..1837 +
1695995577.4061768-UTR-E-fasciculatus_F_contig10203:1666..18371695995577.4061768-UTR-E-fasciculatus_F_contig10203:1666..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10203 1667..1837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.7027428-CDS-E-fasciculatus_F_contig10203:1837..23261622927523.7027428-CDS-E-fasciculatus_F_contig10203:1837..2326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 1838..2326 +
1695995577.4154024-CDS-E-fasciculatus_F_contig10203:1837..23261695995577.4154024-CDS-E-fasciculatus_F_contig10203:1837..2326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 1838..2326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10203.195.1prot_E-fasciculatus_F_contig10203.195.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10203 1838..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10203.195.1

>prot_E-fasciculatus_F_contig10203.195.1 ID=prot_E-fasciculatus_F_contig10203.195.1|Name=mRNA_E-fasciculatus_F_contig10203.195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
MAFSSFYFLFVPHLPPGVRAELFLIARRVQPSLSLVNGTHFEVWYSRELF
SDISLSSRCGYFCSLGVYCVGMVGAVFHSHSLSFAARVKEIEIDTRTLTA
GRWRHGHMGAGTQLMCVGVLTRLPPAIMRSSALLHVVPYCGSSSFNKYTT
NMAPRRFLLVLPD
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mRNA from alignment at E-fasciculatus_F_contig10203:1667..2326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10203.195.1 ID=mRNA_E-fasciculatus_F_contig10203.195.1|Name=mRNA_E-fasciculatus_F_contig10203.195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:1667..2326+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCATTTATTGCTGTTTTGATTTCGTTTTCGGGTGTTTTTTTTTATGTTT
TCGTGCTTGAGAATGGCAATATTCCCCGCAGTGTCCGTGGTGAGACGTGT
AGTCCATGTAGAGTGCTACACTTGTCAGTGTATTTTTTCGTTTAACTACA
GCCATCCAGGGTGGATAACACATGGCTTTTTCTTCTTTTTATTTTCTTTT
CGTGCCCCATCTTCCTCCTGGGGTGCGTGCTGAATTGTTTTTGATCGCGA
GAAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTACTCACTTTGAAGTT
TGGTACTCACGAGAGCTTTTCAGCGATATTTCGCTTTCGAGTCGATGTGG
TTATTTTTGCAGCCTGGGCGTCTATTGCGTTGGTATGGTAGGGGCGGTAT
TTCACTCGCACAGCTTATCCTTTGCAGCCAGAGTAAAAGAGATAGAAATT
GATACAAGAACTCTGACGGCGGGCAGATGGCGCCACGGTCACATGGGCGC
TGGGACACAACTAATGTGTGTGGGTGTGCTTACGAGGCTACCGCCTGCCA
TCATGCGGTCGAGTGCGCTTCTCCATGTCGTGCCGTATTGCGGTTCCTCA
TCGTTCAACAAATACACCACAAACATGGCCCCACGTCGGTTCTTGCTGGT
CCTCCCCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10203:1667..2326+

>mRNA_E-fasciculatus_F_contig10203.195.1 ID=mRNA_E-fasciculatus_F_contig10203.195.1|Name=mRNA_E-fasciculatus_F_contig10203.195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:1667..2326+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTTTTCTTCTTTTTATTTTCTTTTCGTGCCCCATCTTCCTCCTGG
GGTGCGTGCTGAATTGTTTTTGATCGCGAGAAGGGTCCAGCCGTCCCTTT
CCCTCGTCAACGGTACTCACTTTGAAGTTTGGTACTCACGAGAGCTTTTC
AGCGATATTTCGCTTTCGAGTCGATGTGGTTATTTTTGCAGCCTGGGCGT
CTATTGCGTTGGTATGGTAGGGGCGGTATTTCACTCGCACAGCTTATCCT
TTGCAGCCAGAGTAAAAGAGATAGAAATTGATACAAGAACTCTGACGGCG
GGCAGATGGCGCCACGGTCACATGGGCGCTGGGACACAACTAATGTGTGT
GGGTGTGCTTACGAGGCTACCGCCTGCCATCATGCGGTCGAGTGCGCTTC
TCCATGTCGTGCCGTATTGCGGTTCCTCATCGTTCAACAAATACACCACA
AACATGGCCCCACGTCGGTTCTTGCTGGTCCTCCCCGACATGGCTTTTTC
TTCTTTTTATTTTCTTTTCGTGCCCCATCTTCCTCCTGGGGTGCGTGCTG
AATTGTTTTTGATCGCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCAAC
GGTACTCACTTTGAAGTTTGGTACTCACGAGAGCTTTTCAGCGATATTTC
GCTTTCGAGTCGATGTGGTTATTTTTGCAGCCTGGGCGTCTATTGCGTTG
GTATGGTAGGGGCGGTATTTCACTCGCACAGCTTATCCTTTGCAGCCAGA
GTAAAAGAGATAGAAATTGATACAAGAACTCTGACGGCGGGCAGATGGCG
CCACGGTCACATGGGCGCTGGGACACAACTAATGTGTGTGGGTGTGCTTA
CGAGGCTACCGCCTGCCATCATGCGGTCGAGTGCGCTTCTCCATGTCGTG
CCGTATTGCGGTTCCTCATCGTTCAACAAATACACCACAAACATGGCCCC
ACGTCGGTTCTTGCTGGTCCTCCCCGAC
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