mRNA_E-fasciculatus_F_contig1248.1908.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1248.1908.1
Unique NamemRNA_E-fasciculatus_F_contig1248.1908.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1248.1908.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 2.470e-90
Identity = 147/163 (90.18%), Postives = 161/163 (98.77%), Query Frame = 1 
Query:    1 MARGMMRRQAAVGVVALALAGGGNTASAFVLGPSKGGLRSKAPRTPAVRPLQMAGGGPRGRSGGAPVRIEGADGSRVVVASAMPIEGISQQRPISMDGDGYDESEMVEGAMGAAAGLQQEDYQGFTGGQQRRTNQMVDPNSREATLTRKNKLLFGGLVVATVT 489
            MARGMMRRQAAVGVVALAL+GGG++ASAFVLGPSKGGLRSKAPRTPAVRPLQMAGGGPRGRSGGAPVRIEGADGSRVVVASAMP++GI QQ+ +S+DGDGYD+SEMVEGA+GAA+G+QQEDYQGFTGGQ+RRTNQ+VDPNSREATLTRKNKLLFGGLVVATVT
Sbjct:    1 MARGMMRRQAAVGVVALALSGGGSSASAFVLGPSKGGLRSKAPRTPAVRPLQMAGGGPRGRSGGAPVRIEGADGSRVVVASAMPVQGIPQQQSMSVDGDGYDDSEMVEGAIGAASGMQQEDYQGFTGGQERRTNQVVDPNSREATLTRKNKLLFGGLVVATVT 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1248.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRN9_ECTSI2.470e-9090.18Rubredoxin-like domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1248contigE-fasciculatus_F_contig1248:14063..16931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue8.4e-74
Seed eggNOG ortholog2880.D8LRN9
EggNOG OGs2E1U7@1,2S947@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-12_000500.1
Exons3
Model size501
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1248.1908.1prot_E-fasciculatus_F_contig1248.1908.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1248 14063..16931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.945981-CDS-E-fasciculatus_F_contig1248:14062..141851622927754.945981-CDS-E-fasciculatus_F_contig1248:14062..14185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 14063..14185 +
1695995680.6411633-CDS-E-fasciculatus_F_contig1248:14062..141851695995680.6411633-CDS-E-fasciculatus_F_contig1248:14062..14185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 14063..14185 +
1622927754.9612257-CDS-E-fasciculatus_F_contig1248:15752..159421622927754.9612257-CDS-E-fasciculatus_F_contig1248:15752..15942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 15753..15942 +
1695995680.6510913-CDS-E-fasciculatus_F_contig1248:15752..159421695995680.6510913-CDS-E-fasciculatus_F_contig1248:15752..15942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 15753..15942 +
1622927754.9707336-CDS-E-fasciculatus_F_contig1248:16743..169311622927754.9707336-CDS-E-fasciculatus_F_contig1248:16743..16931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 16744..16931 +
1695995680.6591089-CDS-E-fasciculatus_F_contig1248:16743..169311695995680.6591089-CDS-E-fasciculatus_F_contig1248:16743..16931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 16744..16931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1248.1908.1

>prot_E-fasciculatus_F_contig1248.1908.1 ID=prot_E-fasciculatus_F_contig1248.1908.1|Name=mRNA_E-fasciculatus_F_contig1248.1908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
MARGMMRRQAAVGVVALALAGGGNTASAFVLGPSKGGLRSKAPRTPAVRP
LQMAGGGPRGRSGGAPVRIEGADGSRVVVASAMPIEGISQQRPISMDGDG
YDESEMVEGAMGAAAGLQQEDYQGFTGGQQRRTNQMVDPNSREATLTRKN
KLLFGGLVVATVTGKG*
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mRNA from alignment at E-fasciculatus_F_contig1248:14063..16931+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1248.1908.1 ID=mRNA_E-fasciculatus_F_contig1248.1908.1|Name=mRNA_E-fasciculatus_F_contig1248.1908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2869bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:14063..16931+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCGGGGCATGATGCGGCGACAGGCCGCTGTTGGGGTAGTGGCTCT
GGCGCTTGCCGGCGGTGGCAACACAGCGAGTGCCTTCGTCCTGGGCCCTT
CAAAGGGAGGGCTTCGATCGAAGGTGTGTGGGGTTTTGAGCTCCGGCCTG
CTGGAAGATCGGTGTGTGGCTGCCGCAGCGAGTTGAACTCAACGGCCCAA
AGAGATCATGTTGCTGGTTTTCCTTTTCAGCCTGCGCACGCCTCATCTAC
GCCTTGTCTGTGATCTCTGTTGGATGTGCGTGTGAGCTCACCAAGCGTGC
GTGCTTCACCAATATCAATGGGTGCTAGGCACTTTGCGTTGCACAAAGAA
CAACAGCTATGTAGAGTACAGCCTCATGTGCGCGTATGTATGCGTATGTA
TGCGTGTAGGAAGGGAGCAAAGTGCTTCGCTTCCCTCGACACAACCTCAG
GGCACACACATTGGTTGTTGTTCTTGACCCAATCGATCCGTACGGTGTTG
CCTGAGAGGGGGAGCATTCGACACACGCCTGGCGAAACCCGTACGATATA
TATCCCCTCAAGTATACATCTAGACCCTCTTTGGTCGCAGACTGCCCAGG
GCTAAACAGCAGGATGTACAAACCATGTGGCATTGTGTGCCGATTGATAT
GCACAGCTGGTGCACTGCTGCGTGCTGCCGCAAACTTTAACTTTCATCTC
GGATGCAGTACCGTAGAATCACGTATGTATACCTAGCAGGTTCGCTCGTT
GCTGGTCTGGTCGGTATGTCTATGTCGCCAGCTATGCATACACCGTGGCA
ACCACCACAACGCGCAGCAGCTCCAAACGACAGCCGCTTGCTTCCCTCCG
GATGGAAAGTACTCAGGAATAATGCTGCTTCGGGTACTGCTGTAGTCTAC
CAGTCCTGTAGGCCCCACGCCCGGTGCTATACCTGGCTCGGCTAATCCAA
ATGGGCTGTTTCCATCTGTGGAACTGCCCACGCGTTGCGGAGGTATACCC
CAGAGCAATGAAGCGTATGCTACACGGAGGACAACACGCCACTACTGAAG
TTTAAGTTTCCTCAATATTGACATGCACACTGCGTTCGTGCATGTTCAAG
TTGCCAATACTCGTCTTCACTGGCGCCGTCCGAGCCAACACAAACAACAT
CACGAAACGTAAGGCACGCACCGATATACTGCCGGAGATCGTAGCAAAGC
AGGGGGTGTATTCGACACCAAAGGCATGCTCATGTGCCAACGAAATCGCA
TTTGTATTGACGGGTGCCGTCCGACATACAGCAGTATGTATGTTGTGCTG
CACCAACAACGCCACACAAGTGCTGCAAGACTTGCACCGACGCGCTGGCT
GCCCGTGAGTAAGGACACACCCCCTGTTTCTGGTTCGGCCTCCGGCAGCC
CGTCGGTGCACGTCTTACGGTTGCGTGGCATTGTTGGGGTAGTTCGGACG
GCGCGCGTCAAACCACTACACTCTTTTACTCTTGTTGACCAACAGACCAG
TTTTCAAGTACTACTACAGCTGTACCACAGTAGATGCGACATGACGTTGC
TAGTTGCTGTTGGCGGTTGATTTACCAGCAAGTACGGCTGGCACAGCAAA
CCCCAACAACGAGTGCCTTGTGCAGATGCACTCCTTCCCCGACACCATCG
CCACCATCCACGACGCAAAACCCCAACCCTCGTTTCCCAGGCACCGAGAA
CGCCGGCGGTCCGACCGCTGCAGATGGCGGGGGGCGGCCCGAGAGGGAGA
TCTGGCGGGGCCCCCGTACGCATCGAAGGAGCGGACGGTTCGAGGGTGGT
TGTCGCCTCGGCGATGCCCATCGAGGGGATTTCTCAGCAGCGGCCCATAA
GTATGGACGGGGACGGGTATGACGAGAGCGGTACGTGCCCTCCGTTTGGC
TGATTTTTATCACGCCGCCATGAAACCGAAAAACCGCCTCCCTATTTAGT
GGTAGTGGTACAATAGTGTGGTGATGTGTTTCTTTAAGGGGTGCTCGAAG
GTGTTTCTGTCGTACAAGCTTTTTTTCGATGGCATATACAGATGAGATGA
AACGACAACACTGAACATGCTACGAAGTTGTGCTCGGTTTGGGGTGCTCA
GCTGCAGATCGCTCTCGAATATTGATTTTGCCCTGACACTGCTGTCAGCA
CGAGACTGCTGTCGAGTCGGCTTTGCGATCACTCGGTTGGGTGGCACGTC
TGTCAGCCACCTGTTGTTGGTGTAGACTGTCAAAGTGCACGATACGTTCT
CCCACGAAAGAATGAAAGAATACCTGACACGAGATGGCCATCCTATCTCT
CTTTGCCAGTGCCAGCTAGCCGTAACAAGCACTTGATGTAGGCGAACACT
TGGTGCCTTGCCGAGGGGGTTGTATCAGTATCAACGAAGTTCGAAACGTG
GTGACAGCACCCGGTTCCAATATCATCAAGTCTAGTTTATACCCGACAGG
CTTGGACGGACAAGAATCGAACCTACAGTATGCATACACCCCTTCCGAGG
CACGAGCAGCAACGCCCAAACGACGTGACAAGTGCATATGGCTGTGTTGC
AATCGAAGTACCCCTCTGACCCCCTCTCCTCTCTCCTCCACGCAACAAAA
ATAACGTGACGTGACTGCCGGTATAATTCTTCTGCAATCGAATCACCTGC
TAACGCCCCCTCCACCCGAACCTCTTCTCAGAGATGGTGGAAGGCGCGAT
GGGAGCAGCAGCGGGGTTGCAACAGGAGGATTACCAGGGCTTCACTGGGG
GGCAGCAGAGGAGAACGAATCAGATGGTGGACCCCAACAGCCGAGAGGCG
ACGCTAACGAGGAAGAACAAGCTGCTATTCGGGGGGCTGGTCGTGGCAAC
GGTCACAGGCAAGGGATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1248:14063..16931+

>mRNA_E-fasciculatus_F_contig1248.1908.1 ID=mRNA_E-fasciculatus_F_contig1248.1908.1|Name=mRNA_E-fasciculatus_F_contig1248.1908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:14063..16931+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCGGGGCATGATGCGGCGACAGGCCGCTGTTGGGGTAGTGGCTCT
GGCGCTTGCCGGCGGTGGCAACACAGCGAGTGCCTTCGTCCTGGGCCCTT
CAAAGGGAGGGCTTCGATCGAAGATGGCTCGGGGCATGATGCGGCGACAG
GCCGCTGTTGGGGTAGTGGCTCTGGCGCTTGCCGGCGGTGGCAACACAGC
GAGTGCCTTCGTCCTGGGCCCTTCAAAGGGAGGGCTTCGATCGAAGGCAC
CGAGAACGCCGGCGGTCCGACCGCTGCAGATGGCGGGGGGCGGCCCGAGA
GGGAGATCTGGCGGGGCCCCCGTACGCATCGAAGGAGCGGACGGTTCGAG
GGTGGTTGTCGCCTCGGCGATGCCCATCGAGGGGATTTCTCAGCAGCGGC
CCATAAGTATGGACGGGGACGGGTATGACGAGAGCGGCACCGAGAACGCC
GGCGGTCCGACCGCTGCAGATGGCGGGGGGCGGCCCGAGAGGGAGATCTG
GCGGGGCCCCCGTACGCATCGAAGGAGCGGACGGTTCGAGGGTGGTTGTC
GCCTCGGCGATGCCCATCGAGGGGATTTCTCAGCAGCGGCCCATAAGTAT
GGACGGGGACGGGTATGACGAGAGCGAGATGGTGGAAGGCGCGATGGGAG
CAGCAGCGGGGTTGCAACAGGAGGATTACCAGGGCTTCACTGGGGGGCAG
CAGAGGAGAACGAATCAGATGGTGGACCCCAACAGCCGAGAGGCGACGCT
AACGAGGAAGAACAAGCTGCTATTCGGGGGGCTGGTCGTGGCAACGGTCA
CAGGCAAGGGATGAAGATGGTGGAAGGCGCGATGGGAGCAGCAGCGGGGT
TGCAACAGGAGGATTACCAGGGCTTCACTGGGGGGCAGCAGAGGAGAACG
AATCAGATGGTGGACCCCAACAGCCGAGAGGCGACGCTAACGAGGAAGAA
CAAGCTGCTATTCGGGGGGCTGGTCGTGGCAACGGTCACAGGCAAGGGAT
GA
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