mRNA_E-fasciculatus_F_contig12474.1901.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE) HSP 1 Score: 264 bits (674), Expect = 6.030e-84 Identity = 128/134 (95.52%), Postives = 129/134 (96.27%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKA----ARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
PP RKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKA ARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSK+
Sbjct: 285 PPVRKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKARGGAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKL 418
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA) HSP 1 Score: 201 bits (511), Expect = 7.370e-60 Identity = 91/129 (70.54%), Postives = 110/129 (85.27%), Query Frame = 1
Query: 4 PARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
P R T D+R+R +LR ++PQD N+PYDM +VSKV+DDN +++IMPD+A+NI VGF RMEG VG+VANNP LAGCLDI+SSTK ARFVRFCD+FNIPLLTFVDVPGFLPGT QE+GGIIRHG+K+
Sbjct: 270 PVRSTCDTRERAIPALRRIIPQDPNIPYDMVEIVSKVLDDNNFYQIMPDYAKNIVVGFGRMEGRTVGVVANNPSSLAGCLDINSSTKGARFVRFCDSFNIPLLTFVDVPGFLPGTDQEYGGIIRHGAKL 398
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A7S1ZPW7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPW7_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.890e-59 Identity = 87/129 (67.44%), Postives = 107/129 (82.95%), Query Frame = 1
Query: 4 PARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
P++ T DS R ++L+YL+P D N PYDMKHV+S +VD++ +FEI+P++A NI FARMEG VGIVANNP+ LAGCLDI SSTKAARFVRFC+AFNIP++T VDVPGFLPG QEHGGIIRHG+K+
Sbjct: 7 PSKPTEDSPSRSCDALKYLVPDDPNTPYDMKHVISSIVDNHDFFEILPNYASNIVTAFARMEGQTVGIVANNPLTLAGCLDIGSSTKAARFVRFCNAFNIPIVTLVDVPGFLPGVGQEHGGIIRHGAKL 135
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: UPI0019C7457C (Acyl-CoA carboxylase subunit beta n=1 Tax=Pseudorhodobacter sp. TaxID=1934400 RepID=UPI0019C7457C) HSP 1 Score: 195 bits (495), Expect = 3.110e-59 Identity = 88/129 (68.22%), Postives = 108/129 (83.72%), Query Frame = 1
Query: 4 PARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
P RK++D DR+D SL L+P ++N PYD+K ++ KV DD +FE+ PD+A+NI +GF RMEGH VGIVAN PM LAGCLDI SS KAARFVRFCDAFNIP++TFVDVPGFLPGT+QEHGGII+HG+K+
Sbjct: 93 PVRKSNDRADRIDISLDTLVPDNANKPYDIKELIVKVSDDGDFFELQPDYAKNIVIGFCRMEGHTVGIVANQPMVLAGCLDIKSSIKAARFVRFCDAFNIPVVTFVDVPGFLPGTSQEHGGIIKHGAKL 221
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A520D1F2_9BURK (Acyl-CoA carboxylase subunit beta (Fragment) n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520D1F2_9BURK) HSP 1 Score: 193 bits (491), Expect = 1.150e-58 Identity = 86/130 (66.15%), Postives = 109/130 (83.85%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
PP R + D DR D SL L+P+++N PYDMK +++KVVDD +FE+ PD+A+NI +GFARMEG +GIVAN P+ LAGCLDI SS KAARFVRFCDAFNIP++TFVDVPGF+PGT+QE+GGII+HG+K+
Sbjct: 144 PPVRPSGDPADRADLSLDTLVPENANKPYDMKELITKVVDDGDFFELQPDYAKNIVIGFARMEGQSIGIVANQPLVLAGCLDIKSSIKAARFVRFCDAFNIPVVTFVDVPGFMPGTSQEYGGIIKHGAKL 273
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A523NTV8_9PROT (Acyl-CoA carboxylase subunit beta n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NTV8_9PROT) HSP 1 Score: 197 bits (502), Expect = 1.260e-58 Identity = 89/130 (68.46%), Postives = 110/130 (84.62%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
PP R T D DR++ SL L+P +SN+PYDMK +++K+VD+ +FE+ P++A+NI +GF R+ G PVGIVAN PM LAGCLDIDSS KAARFVRFCDAFNIP++TFVDVPGFLPGTAQEHGGIIRHG+K+
Sbjct: 253 PPQRVTDDPPDRLEMSLDTLVPANSNLPYDMKELINKIVDEGDFFELQPEFAQNIVIGFGRLHGAPVGIVANQPMVLAGCLDIDSSCKAARFVRFCDAFNIPIVTFVDVPGFLPGTAQEHGGIIRHGAKL 382
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A7S3HMU7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMU7_9STRA) HSP 1 Score: 192 bits (487), Expect = 2.530e-58 Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
P R T DSR R++ESLR+ +P D NVPYDM VV KVVD+ EIMP++A+NI GFARMEG VGIVANNP LAGCLDIDSS KAARFVRF D+FNIP++TFVDVPGFLPGT QEHGGIIR+G+K+
Sbjct: 72 PAPRPTHDSRHRIEESLRFQVPDDPNVPYDMLEVVKKVVDEGVVTEIMPNYAKNIICGFARMEGRTVGIVANNPGHLAGCLDIDSSIKAARFVRFLDSFNIPIVTFVDVPGFLPGTVQEHGGIIRNGAKL 201
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: T1WR23_9ARCH (Acetyl-CoA/propionyl-CoA carboxylase (Fragment) n=1 Tax=uncultured archaeon TaxID=115547 RepID=T1WR23_9ARCH) HSP 1 Score: 188 bits (478), Expect = 6.130e-58 Identity = 87/129 (67.44%), Postives = 105/129 (81.40%), Query Frame = 1
Query: 4 PARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
P R TSD+ DR+D SL L+P + N PYDMK ++ KVVD+ +FEI PD+A NI +GF R+EG VG+VAN P LAGCLDIDSS KAARFVRFCD FNIP++TFVDVPGFLPGTAQE+GGII+HG+K+
Sbjct: 84 PTRPTSDATDRIDLSLDTLVPANPNKPYDMKELILKVVDEGDFFEIQPDFAANILIGFGRIEGATVGVVANQPTVLAGCLDIDSSRKAARFVRFCDCFNIPIVTFVDVPGFLPGTAQEYGGIIKHGAKL 212
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A3C2DX99_9PROT (Methylmalonyl-CoA carboxyltransferase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3C2DX99_9PROT) HSP 1 Score: 192 bits (488), Expect = 6.410e-58 Identity = 89/130 (68.46%), Postives = 107/130 (82.31%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
PP R T DS DR+++SL L+P ++N YDMK +++KVVDD +FE+ PD+A NI +G ARMEG VG+VAN PM LAGCLD+DSS KAARFVRFCD FNIPL+TFVDVPGFLPGTAQE+GGII HGSK+
Sbjct: 200 PPLRDTDDSADRLEKSLDTLVPAEANKSYDMKELIAKVVDDGDFFELQPDFAGNIIIGLARMEGSTVGVVANQPMVLAGCLDMDSSRKAARFVRFCDCFNIPLVTFVDVPGFLPGTAQEYGGIITHGSKL 329
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Match: A0A0F2RAK7_9PROT (Methylmalonyl-CoA carboxyltransferase n=4 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A0F2RAK7_9PROT) HSP 1 Score: 196 bits (497), Expect = 6.950e-58 Identity = 90/130 (69.23%), Postives = 108/130 (83.08%), Query Frame = 1
Query: 1 PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 390
PP R T+D DR D SL L+P + N+PYDMK +++KVVD+ ++EI PD+ARNI GFARMEG +GIVAN PM LAGCLDIDSS KAARFVRFCDAFNIP++TFVDVPGFLPGT QE+GGII+HG+K+
Sbjct: 253 PPVRPTADPADREDFSLDTLIPNNPNMPYDMKELITKVVDEGDFYEIAPDYARNIITGFARMEGSTIGIVANQPMVLAGCLDIDSSRKAARFVRFCDAFNIPVVTFVDVPGFLPGTTQEYGGIIKHGAKL 382 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12474.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12474.1901.1 >prot_E-fasciculatus_F_contig12474.1901.1 ID=prot_E-fasciculatus_F_contig12474.1901.1|Name=mRNA_E-fasciculatus_F_contig12474.1901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp PPARKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDback to top mRNA from alignment at E-fasciculatus_F_contig12474:770..2534- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12474.1901.1 ID=mRNA_E-fasciculatus_F_contig12474.1901.1|Name=mRNA_E-fasciculatus_F_contig12474.1901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1765bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:770..2534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12474:770..2534- >mRNA_E-fasciculatus_F_contig12474.1901.1 ID=mRNA_E-fasciculatus_F_contig12474.1901.1|Name=mRNA_E-fasciculatus_F_contig12474.1901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:770..2534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |