mRNA_E-fasciculatus_F_contig12472.1900.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: D8LRP8_ECTSI (Rab GDP dissociation inhibitor n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP8_ECTSI) HSP 1 Score: 219 bits (557), Expect = 1.430e-67 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV
Sbjct: 21 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 125
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: A0A835ZGN9_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN9_9STRA) HSP 1 Score: 184 bits (466), Expect = 4.330e-54 Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP GCEMLADG YDAI+MGTGLKEA++SGLLST GMKVLHVDRN++YGG+CASLNLTNLY KFR G P P LGHPTRDYNVDLIPKF+MA GNLVKMLL+TKV
Sbjct: 14 WLPAGCEMLADGAYDAIIMGTGLKEAVISGLLSTKGMKVLHVDRNSWYGGDCASLNLTNLYGKFRAGADPPPSLGHPTRDYNVDLIPKFIMACGNLVKMLLLTKV 118
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: K3X8R5_GLOUD (Rab GDP dissociation inhibitor n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8R5_GLOUD) HSP 1 Score: 161 bits (407), Expect = 1.950e-45 Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP G E LADGEYDAIV+GTGLKE I+SGLL+ G KVLH+DRN YYGGECASLNLTNLY KF+PGQPP +LG RDYN+DL+PKF+MA G LVKMLL TKV
Sbjct: 12 WLPAGTEALADGEYDAIVLGTGLKECILSGLLAVNGKKVLHLDRNAYYGGECASLNLTNLYQKFKPGQPPRDDLGA-NRDYNIDLVPKFIMACGKLVKMLLHTKV 115
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: F0W0X7_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0X7_9STRA) HSP 1 Score: 160 bits (405), Expect = 3.770e-45 Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP+GCE LADGEYDAIV+GTGLKE I+SGLL+ G KVLH+DRN+YYGG+CASLNL NLY K++PG P ELG +RDYN+DLIPKF+MA G LVKMLL TKV
Sbjct: 11 WLPEGCESLADGEYDAIVLGTGLKECILSGLLAVNGKKVLHLDRNSYYGGDCASLNLANLYEKYKPGTKPPSELGS-SRDYNIDLIPKFIMACGKLVKMLLHTKV 114
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: A0A024FZZ5_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZZ5_9STRA) HSP 1 Score: 162 bits (409), Expect = 8.470e-45 Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLPDGCE LADGEYDAIV+GTGLKE I+SGLL+ G KVLH+DRN+YYGG+CASLNL NLY K++PG P ELG +RDYN+DLIPKF+MA G LVKMLL TKV
Sbjct: 11 WLPDGCESLADGEYDAIVLGTGLKECILSGLLAVNGKKVLHLDRNSYYGGDCASLNLANLYEKYKPGTKPPSELGS-SRDYNIDLIPKFIMACGKLVKMLLHTKV 114
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: A0A8K1CTA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTA6_PYTOL) HSP 1 Score: 159 bits (402), Expect = 1.020e-44 Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP G E LADGEYDAIV+GTGLKE I+SGLL+ G KVLH+DRN YYGGECASLNLTNLYNKF+P Q P +LG RDYN+DLIPKF+MA G LVKMLL TKV
Sbjct: 11 WLPQGTEALADGEYDAIVLGTGLKECILSGLLAVNGKKVLHMDRNPYYGGECASLNLTNLYNKFKPDQEPRSDLGS-NRDYNIDLIPKFIMACGKLVKMLLHTKV 114
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: V9EI70_PHYPR (Rab GDP dissociation inhibitor n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EI70_PHYPR) HSP 1 Score: 149 bits (375), Expect = 4.920e-44 Identity = 76/105 (72.38%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP G E LADGEYD IV+GTGLKE I+SGLL+ G KVL VDRN YYGGECAS NLTNLY KF+P Q P +LG RDYNVDL+PKF+MA G LVKMLL TKV
Sbjct: 11 WLPQGTEALADGEYDVIVLGTGLKECILSGLLAVNGKKVLVVDRNPYYGGECASPNLTNLYKKFKPDQEPRTDLGA-DRDYNVDLVPKFIMACGKLVKMLLHTKV 114
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: T0Q659_SAPDV (Rab GDP dissociation inhibitor n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q659_SAPDV) HSP 1 Score: 156 bits (394), Expect = 1.560e-43 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP G E LADGEYDAIV+GTGLKE I+SGLL+T G KVLH+DRN+YYGG+CASLNLTNLY KFR G P LG RDYN+DLIPKF+MA G LVKMLL TKV
Sbjct: 12 WLPAGTEALADGEYDAIVLGTGLKECILSGLLATKGQKVLHIDRNDYYGGDCASLNLTNLYGKFRNGAEPLTGLGS-NRDYNIDLIPKFIMACGKLVKMLLHTKV 115
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: A0A7S2JVQ7_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVQ7_9STRA) HSP 1 Score: 155 bits (391), Expect = 4.440e-43 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP E+LADGEYDAIVMGTGLKE I+SGLLST GMK+LH+DRNNYYG +CASLNLTNLY KF+ GQ PE R+YNVDLIPKF+MA GNL KMLL TKV
Sbjct: 14 WLPADKEILADGEYDAIVMGTGLKECILSGLLSTQGMKILHIDRNNYYGADCASLNLTNLYEKFQAGQ--VPEYLGSNREYNVDLIPKFIMACGNLTKMLLHTKV 116
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Match: A0A7R9WAK8_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAK8_9STRA) HSP 1 Score: 154 bits (390), Expect = 6.010e-43 Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 1
Query: 1 WLPDGCEMLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLTNLYNKFRPGQPPAPELGHPTRDYNVDLIPKFLMANGNLVKMLLMTKV 315
WLP+G E LADGEYDAIVMGTGLKE ++SGLLS GMKVLH+DRN YYG +CASLNLTNLY KF G+PP+ ELG RDYNVDLIPK +MA GNL KMLL +KV
Sbjct: 12 WLPEGMESLADGEYDAIVMGTGLKECVISGLLSVNGMKVLHLDRNGYYGADCASLNLTNLYKKFNAGEPPS-ELGT-NRDYNVDLIPKLIMACGNLTKMLLHSKV 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12472.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12472.1900.1 >prot_E-fasciculatus_F_contig12472.1900.1 ID=prot_E-fasciculatus_F_contig12472.1900.1|Name=mRNA_E-fasciculatus_F_contig12472.1900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp MLADGEYDAIVMGTGLKEAIMSGLLSTLGMKVLHVDRNNYYGGECASLNLback to top mRNA from alignment at E-fasciculatus_F_contig12472:2711..3808+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12472.1900.1 ID=mRNA_E-fasciculatus_F_contig12472.1900.1|Name=mRNA_E-fasciculatus_F_contig12472.1900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12472:2711..3808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12472:2711..3808+ >mRNA_E-fasciculatus_F_contig12472.1900.1 ID=mRNA_E-fasciculatus_F_contig12472.1900.1|Name=mRNA_E-fasciculatus_F_contig12472.1900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12472:2711..3808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |