mRNA_E-fasciculatus_F_contig12456.1886.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12456.1886.1
Unique NamemRNA_E-fasciculatus_F_contig12456.1886.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12456.1886.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQ 147
            MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQ
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12456.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV36_ECTSI1.040e-22100.00Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12456contigE-fasciculatus_F_contig12456:29..184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionMediator complex, subunit Med21
Ec32 orthologEc-12_005030.1
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.55413-CDS-E-fasciculatus_F_contig12456:28..1841622927751.55413-CDS-E-fasciculatus_F_contig12456:28..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 29..184 -
1695995679.4933984-CDS-E-fasciculatus_F_contig12456:28..1841695995679.4933984-CDS-E-fasciculatus_F_contig12456:28..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 29..184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12456.1886.1prot_E-fasciculatus_F_contig12456.1886.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12456 29..184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12456.1886.1

>prot_E-fasciculatus_F_contig12456.1886.1 ID=prot_E-fasciculatus_F_contig12456.1886.1|Name=mRNA_E-fasciculatus_F_contig12456.1886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=52bp
MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQQ
QQ
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mRNA from alignment at E-fasciculatus_F_contig12456:29..184-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12456.1886.1 ID=mRNA_E-fasciculatus_F_contig12456.1886.1|Name=mRNA_E-fasciculatus_F_contig12456.1886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12456:29..184- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGTGGACAAGGATGCCGTTTCTGCCATGCAAGAGTCGGTGGACCA
GCTAGCTCTCAGCATGTTCGATTCCCTTCGATTAATCCCATTTTCAGAGG
AAGTCAAAGGGGGCGCGAGGGGGGTGGCTCCGTTGCAGCAGCAGCAGCAG
CAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12456:29..184-

>mRNA_E-fasciculatus_F_contig12456.1886.1 ID=mRNA_E-fasciculatus_F_contig12456.1886.1|Name=mRNA_E-fasciculatus_F_contig12456.1886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12456:29..184- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGTGGACAAGGATGCCGTTTCTGCCATGCAAGAGTCGGTGGACCA
GCTAGCTCTCAGCATGTTCGATTCCCTTCGATTAATCCCATTTTCAGAGG
AAGTCAAAGGGGGCGCGAGGGGGGTGGCTCCGTTGCAGCAGCAGCAGCAG
CAGCAGATGGAAGTGGACAAGGATGCCGTTTCTGCCATGCAAGAGTCGGT
GGACCAGCTAGCTCTCAGCATGTTCGATTCCCTTCGATTAATCCCATTTT
CAGAGGAAGTCAAAGGGGGCGCGAGGGGGGTGGCTCCGTTGCAGCAGCAG
CAGCAGCAGCAG
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