mRNA_E-fasciculatus_F_contig12455.1885.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12455.1885.1
Unique NamemRNA_E-fasciculatus_F_contig12455.1885.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A0A6H5JQJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQJ6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.320e-50
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGEAPDGKS+K TIFHRVIPGFMLQGGDF+NADGTGGSSIYGAKFEDENF LKHTGPGVLSMANAGPGTNGSQFFICVAK
Sbjct:  209 LCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFDNADGTGGSSIYGAKFEDENFNLKHTGPGVLSMANAGPGTNGSQFFICVAK 290
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: Q9ZT54_GRIJA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q9ZT54_GRIJA)

HSP 1 Score: 135 bits (340), Expect = 6.160e-39
Identity = 64/79 (81.01%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFIC 237
            LCTGE   G  FK ++FHRVIPGFMLQGGDF   DGTGG SIYG KFEDENFTLKHTGPG LSMANAGP TNGSQFFIC
Sbjct:   37 LCTGEK--GFGFKGSVFHRVIPGFMLQGGDFTRGDGTGGKSIYGEKFEDENFTLKHTGPGTLSMANAGPNTNGSQFFIC 113
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A7SXN2_NEMVE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SXN2_NEMVE)

HSP 1 Score: 134 bits (338), Expect = 1.280e-38
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   G  +K + FHRVIPGFM QGGDF   DGTGG SIYGAKF DENF LKHTGPG+LSMANAGPGTNGSQFF+C AK
Sbjct:   38 LCTGEK--GFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAK 117
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: R9THY7_ACAPC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Acartia pacifica TaxID=335913 RepID=R9THY7_ACAPC)

HSP 1 Score: 134 bits (338), Expect = 1.280e-38
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   G  FK + FHRVIPGFM QGGDF N +GTGG SIYG KFEDENF+LKHTGPG+LSMANAGP TNGSQFFIC AK
Sbjct:   38 LCTGEK--GFGFKGSTFHRVIPGFMCQGGDFTNHNGTGGKSIYGNKFEDENFSLKHTGPGILSMANAGPNTNGSQFFICTAK 117
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A0A433P7T0_9FUNG (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P7T0_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 1.310e-38
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE  +G  +K++ FHRVIP FMLQGGDF N +GTGG SIYG KFEDENFTLKHTGPGVLSMANAGP TNGSQFFIC  K
Sbjct:   39 LCTGE--NGFGYKESKFHRVIPQFMLQGGDFTNGNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGPNTNGSQFFICTVK 118
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A0A646QFW4_9MYRI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hemiscolopendra marginata TaxID=943146 RepID=A0A646QFW4_9MYRI)

HSP 1 Score: 134 bits (338), Expect = 1.310e-38
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   G  FK++IFHRVIP FM QGGDF N +GTGG SIYGAKFEDENF LKHTGPG+LSMANAGP TNGSQFFIC  K
Sbjct:   39 LCTGEK--GFGFKNSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGAKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTIK 118
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A0A7S3BI87_9VIRI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BI87_9VIRI)

HSP 1 Score: 134 bits (337), Expect = 1.860e-38
Identity = 64/87 (73.56%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 LCTGEAPDGKS-----FKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   GKS     FK + FHR+IP FM+QGGDF   DGTGG SIYGAKF DENF LKHTGPG+LSMANAGPGTNGSQFFIC  K
Sbjct:   30 LCTGEKGMGKSGKPLHFKGSSFHRIIPNFMIQGGDFTRGDGTGGESIYGAKFADENFNLKHTGPGMLSMANAGPGTNGSQFFICTVK 116
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: UPI000811432A (peptidyl-prolyl cis-trans isomerase-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811432A)

HSP 1 Score: 134 bits (337), Expect = 1.920e-38
Identity = 63/82 (76.83%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   G  +K +IFHRVIP FMLQGGDF N +GTGG SIYG KFEDENFTLKHTGPG++SMANAGP TNGSQFFIC  K
Sbjct:   39 LCTGEK--GFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIMSMANAGPNTNGSQFFICTVK 118
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A0A5P8N5L1_9APIA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Angelica sinensis TaxID=165353 RepID=A0A5P8N5L1_9APIA)

HSP 1 Score: 133 bits (334), Expect = 2.250e-38
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 LCTGEAPDGKS-----FKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   GK+     +K + FHRVIPGFM QGGDF   +GTGG SIYGAKFEDENF  KHTGPG+LSMANAGPGTNGSQFFIC AK
Sbjct:   32 LCTGEKGVGKAGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFEDENFVKKHTGPGILSMANAGPGTNGSQFFICTAK 118
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BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Match: A5BQN6_VITVI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BQN6_VITVI)

HSP 1 Score: 134 bits (337), Expect = 2.360e-38
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 LCTGEAPDGKS-----FKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGPGVLSMANAGPGTNGSQFFICVAK 246
            LCTGE   G+S     FK +IFHRVIP FM QGGDF   DGTGG SIYGAKFEDENF  KHTGPG+LSMANAGPGTNGSQFFIC  K
Sbjct:   39 LCTGEKGVGRSGKPLHFKGSIFHRVIPSFMCQGGDFTRGDGTGGESIYGAKFEDENFIKKHTGPGILSMANAGPGTNGSQFFICTDK 125
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12455.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQJ6_9PHAE7.320e-5095.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
Q9ZT54_GRIJA6.160e-3981.01Peptidyl-prolyl cis-trans isomerase n=1 Tax=Griffi... [more]
A7SXN2_NEMVE1.280e-3876.83Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nemato... [more]
R9THY7_ACAPC1.280e-3878.05Peptidyl-prolyl cis-trans isomerase n=3 Tax=Acarti... [more]
A0A433P7T0_9FUNG1.310e-3878.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Endogo... [more]
A0A646QFW4_9MYRI1.310e-3878.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hemisc... [more]
A0A7S3BI87_9VIRI1.860e-3873.56Peptidyl-prolyl cis-trans isomerase n=1 Tax=Prasin... [more]
UPI000811432A1.920e-3876.83peptidyl-prolyl cis-trans isomerase-like n=1 Tax=R... [more]
A0A5P8N5L1_9APIA2.250e-3873.56Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A5BQN6_VITVI2.360e-3874.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Vitis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12455contigE-fasciculatus_F_contig12455:2826..3596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue3.9e-40
Seed eggNOG ortholog2880.D8LHP1
Preferred namePPIE
KEGG koko:K01802,ko:K09564
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000737,GO:0000974,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0004518,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006308,GO:0006309,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006921,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012501,GO:0012505,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0030141,GO:0030262,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034655,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046700,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097194,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0111@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-26_003850.1
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.5049698-CDS-E-fasciculatus_F_contig12455:2825..29061622927751.5049698-CDS-E-fasciculatus_F_contig12455:2825..2906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12455 2826..2906 +
1695995679.4680483-CDS-E-fasciculatus_F_contig12455:2825..29061695995679.4680483-CDS-E-fasciculatus_F_contig12455:2825..2906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12455 2826..2906 +
1622927751.5205407-CDS-E-fasciculatus_F_contig12455:3431..35961622927751.5205407-CDS-E-fasciculatus_F_contig12455:3431..3596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12455 3432..3596 +
1695995679.4828336-CDS-E-fasciculatus_F_contig12455:3431..35961695995679.4828336-CDS-E-fasciculatus_F_contig12455:3431..3596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12455 3432..3596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12455.1885.1prot_E-fasciculatus_F_contig12455.1885.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12455 2826..3596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12455.1885.1

>prot_E-fasciculatus_F_contig12455.1885.1 ID=prot_E-fasciculatus_F_contig12455.1885.1|Name=mRNA_E-fasciculatus_F_contig12455.1885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=82bp
LCTGEAPDGKSFKDTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDE
NFTLKHTGPGVLSMANAGPGTNGSQFFICVAK
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mRNA from alignment at E-fasciculatus_F_contig12455:2826..3596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12455.1885.1 ID=mRNA_E-fasciculatus_F_contig12455.1885.1|Name=mRNA_E-fasciculatus_F_contig12455.1885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=771bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12455:2826..3596+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGCACCGGGGAGGCACCCGACGGCAAGTCCTTCAAGGACACAATCTT
CCACAGGGTCATCCCGGGGTTCATGCTTCAGGTACTCACTAAATACTGCT
GTGTCTCGAACAGGTACAGTACCCTAGCCTTCTGTGCTTGCAGGCATATA
TACCACTCTGTTTGAAAATGGGCCCTATATTTCCAAGCAGAGTGGCTTTT
TTGTAAGAAAAAAGAAGGCCCTTTCGCTCTTGAAGCAGGCACAACAAAGT
GTCTGCGCCGCGCTCATCGTCGCAGAGGGGCGGCAGGGAGGCGGGACGGT
CCAGAAGGGAATAGACGCGGTTCTTCGACGGCGCATGCTGTAGATCCCGC
GTGTCTTGTGTACTCGTTGTCATTTCCCGCCCATTGTGGGTTCCCGAACA
AGCGCTATTGTACCGGCCGGCACAACGGTGCACGGTTTAGAGAGGACTTC
GATGTCAACCTGGCCTACTTTCTGCCGATGATGTGTATGCTACGCACATA
GTCGGAGGGAGGAAGATAACGGGCATCGAGAGGTAGCCGGGACGCGTGTG
GTGTGACCTATGCACCTTACCTTACCCCCCGATTTGGTGTCCTCTTATCC
CGTCAGGGTGGTGACTTCGAGAACGCTGACGGCACGGGCGGGTCTTCGAT
CTACGGGGCCAAGTTCGAGGACGAGAACTTCACCCTCAAGCACACCGGCC
CCGGCGTGCTGAGCATGGCCAACGCCGGGCCCGGGACCAACGGTAGCCAG
TTCTTCATCTGCGTCGCAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12455:2826..3596+

>mRNA_E-fasciculatus_F_contig12455.1885.1 ID=mRNA_E-fasciculatus_F_contig12455.1885.1|Name=mRNA_E-fasciculatus_F_contig12455.1885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12455:2826..3596+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGCACCGGGGAGGCACCCGACGGCAAGTCCTTCAAGGACACAATCTT
CCACAGGGTCATCCCGGGGTTCATGCTTCAGTTGTGCACCGGGGAGGCAC
CCGACGGCAAGTCCTTCAAGGACACAATCTTCCACAGGGTCATCCCGGGG
TTCATGCTTCAGGGTGGTGACTTCGAGAACGCTGACGGCACGGGCGGGTC
TTCGATCTACGGGGCCAAGTTCGAGGACGAGAACTTCACCCTCAAGCACA
CCGGCCCCGGCGTGCTGAGCATGGCCAACGCCGGGCCCGGGACCAACGGT
AGCCAGTTCTTCATCTGCGTCGCAAAGGGTGGTGACTTCGAGAACGCTGA
CGGCACGGGCGGGTCTTCGATCTACGGGGCCAAGTTCGAGGACGAGAACT
TCACCCTCAAGCACACCGGCCCCGGCGTGCTGAGCATGGCCAACGCCGGG
CCCGGGACCAACGGTAGCCAGTTCTTCATCTGCGTCGCAAAG
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