prot_E-fasciculatus_F_contig12407.1853.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12407.1853.1
Unique Nameprot_E-fasciculatus_F_contig12407.1853.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length400
Homology
BLAST of mRNA_E-fasciculatus_F_contig12407.1853.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE)

HSP 1 Score: 587 bits (1514), Expect = 4.810e-198
Identity = 354/392 (90.31%), Postives = 356/392 (90.82%), Query Frame = 0
Query:    4 KRKAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTPPVSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQSAASGAAAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAAVAAGPDQNGTGAPVGSGGGGLGEAXXXXX--TTEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXXXLPTACAACEVMLELLAVKEYPRSPAQGVSEALLGAMGKMPALFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSLAACDLPRIPVLTLDFWLELQ 393
            ++ AAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTP VSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQS ASG AAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAA                         XXXXX   TEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXX LPTACAACEVM ELLAVKEYPRSPAQGVSEALLGAMGKMP LFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSL ACDLPRIPVLTLDFWLELQ
Sbjct:   37 EQPAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTPAVSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQS-ASGPAAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXX-LPTACAACEVMSELLAVKEYPRSPAQGVSEALLGAMGKMPVLFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSLTACDLPRIPVLTLDFWLELQ 426          
BLAST of mRNA_E-fasciculatus_F_contig12407.1853.1 vs. uniprot
Match: A0A835YMS8_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.480e-23
Identity = 120/448 (26.79%), Postives = 177/448 (39.51%), Query Frame = 0
Query:    8 AWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTPPVSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVR--------------EAFALSQSAASGAAAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVL----HGLESVLAGSVAEPAAAVAAGPDQNGTGAPVGSGGGGLGEAXXXXXTTEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXXXLPTACAACEVMLELLAVKEYPRSPA---------------QGVSEALLGAMGK---------------------------MPALFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGK--GLPLVELLLSLAACDLPRIPVLTLDFWLELQ 393
            AW++ + LLS   +  +A+   +F AN LY+KV ++WHQL+ + R QL   ILQL+R T P      HG      LPF  + +++LC                Y                +   L++ A    +   G  A    +A    M+  L  E D  D+SRA RLE++D + E S  V+    H +   + GS   P  A                                D+++AAL CL  W ++G+SL   AT    L   ++R+L  +               L  A A+C  +  LL + EYPR PA                 V +AL  A+                             +P  FAA +   D ++ S +C   V  A+ E+  VAG      GL LVE LL +  C   ++ +LTL+FWL LQ
Sbjct:   39 AWNLGLSLLSNFPSDTNAN---FFGANLLYSKVTRNWHQLDAQERVQLSDAILQLVRGTGP------HGG-----LPFPTITMTKLCXXXXXXXXXXXXXPSVYXXXXXXXXXXXXXXXXDPGTLARLALMMVS---GQPARMDAIAQKKHMLVALTDEADTVDVSRALRLEVEDGLMEASPHVMQAVEHAMNVAVTGSWTPPQRA--------------------------------DLLVAALKCLNAWVEMGISLSNFATRHEGLFSLLLRVL--KAMPELPGGGGVTPASLLVARASCLALQGLLLIAEYPRPPALTHVFPSEARVRLAVDAVLDALTAALATTEARPPAPSLNAMVTPXXXXXXXXXXGLPRAFAATLDAGDGDTCSAICQAAVDVAEREVACVAGAHATPAGLALVEFLLGVTGCASRQMALLTLEFWLTLQ 435          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12407.1853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLY0_9PHAE4.810e-19890.31Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YMS8_9STRA2.480e-2326.79Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013598Exportin-1/Importin-beta-likePFAMPF08389Xpo1coord: 88..265
e-value: 6.4E-6
score: 26.3
NoneNo IPR availablePANTHERPTHR12363TRANSPORTIN 3 AND IMPORTIN 13coord: 5..393
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..399
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12407contigE-fasciculatus_F_contig12407:545..3241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12407.1853.1mRNA_E-fasciculatus_F_contig12407.1853.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12407 545..3241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12407.1853.1 ID=prot_E-fasciculatus_F_contig12407.1853.1|Name=mRNA_E-fasciculatus_F_contig12407.1853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=400bp
MQNKRKAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVE
HRDQLGTVILQLLRRTPPVSPSPVHGSAVPQPLPFAPVVISRLCLALAAV
AVRAANGVEAYVREAFALSQSAASGAAAGAGVGAHPATVALSLQMIKVLP
QEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAAVAAGP
DQNGTGAPVGSGGGGLGEAAAGGGTTEDVVLAALDCLREWTKLGVSLGRL
ATDRPLLLDRVVRLLGGEGGPGGGGGGGGGAAALPTACAACEVMLELLAV
KEYPRSPAQGVSEALLGAMGKMPALFAAAIQTKDEESASTLCNTVVSFAQ
EEMPLVAGQEGKGLPLVELLLSLAACDLPRIPVLTLDFWLELQVGWGVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR013598Exportin-1/Importin-b-like