mRNA_E-fasciculatus_F_contig12325.1794.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12325.1794.1
Unique NamemRNA_E-fasciculatus_F_contig12325.1794.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12325.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12325contigE-fasciculatus_F_contig12325:2..2152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12325.1794.1prot_E-fasciculatus_F_contig12325.1794.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12325 65..2152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927739.7218165-UTR-E-fasciculatus_F_contig12325:1..641622927739.7218165-UTR-E-fasciculatus_F_contig12325:1..64Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12325 2..64 -
1695995674.1642811-UTR-E-fasciculatus_F_contig12325:1..641695995674.1642811-UTR-E-fasciculatus_F_contig12325:1..64Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12325 2..64 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927739.736666-CDS-E-fasciculatus_F_contig12325:64..1261622927739.736666-CDS-E-fasciculatus_F_contig12325:64..126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12325 65..126 -
1695995674.1764667-CDS-E-fasciculatus_F_contig12325:64..1261695995674.1764667-CDS-E-fasciculatus_F_contig12325:64..126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12325 65..126 -
1622927739.7518256-CDS-E-fasciculatus_F_contig12325:2013..21521622927739.7518256-CDS-E-fasciculatus_F_contig12325:2013..2152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12325 2014..2152 -
1695995674.188653-CDS-E-fasciculatus_F_contig12325:2013..21521695995674.188653-CDS-E-fasciculatus_F_contig12325:2013..2152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12325 2014..2152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12325.1794.1

>prot_E-fasciculatus_F_contig12325.1794.1 ID=prot_E-fasciculatus_F_contig12325.1794.1|Name=mRNA_E-fasciculatus_F_contig12325.1794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
PHRQFAGPVINNHSQAAGCALLYSKRRFSAPPRVHRPSLQIERAIIVALE
LILVSDWLPWTLSRTS*
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mRNA from alignment at E-fasciculatus_F_contig12325:2..2152-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12325.1794.1 ID=mRNA_E-fasciculatus_F_contig12325.1794.1|Name=mRNA_E-fasciculatus_F_contig12325.1794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2151bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12325:2..2152- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACACCGACAGTTCGCAGGGCCGGTGATCAACAATCATAGCCAGGCAGC
AGGGTGTGCATTGTTGTACTCCAAACGACGGTTTTCAGCTCCGCCGCGCG
TCCACCGCCCCTCCCTGCAAATCGAGCGTGCTATCATCGGTGAGCGAATG
CGGAGAGATGTCAGACGTCCTTCCACACTGCACTATTTACTATTTTGATG
CGTTCCGGCATCGGCCATCAGGCTTCGTGCATTTGTCGCTTGCACGTGGT
AGGGTGGTAGGGTACAGCCGACGAAGTGGCAAGACAGGAAGATATGCGCC
ATGCACGTCACAGAAGTTGCTCGCGTCGCCTAGCAAGCTGGCAAGCCGGT
CTTGTTGCGTGGTCCCACGAGGTTGGTCTCTTCCGCATTTTTTTCTTTTC
TTCCGCCAAAGTCCGCCGATTCATTGGGTGTAGCATGTGACCCCGATATG
CCCTTGAGATGGCGACGAAGTGGGAAGAAGCGTGTTAAAGCATCGTTCAA
CCTAGTTGGCTGCTCCATGATTTTGGTGCTGCAAAATACAGAGTAGCAGC
TCCTGTTCGTAGCATGGCTCAAGTAGCAAGTTTGCGGCTAGCGGCAGCCG
CCGTTGCTACCCTTGTGAGCACATGGAGAGGGTTCTCCCGCTGGTTTGCA
GCAGAATATCATCGAACACTTCAACACTGGTTGTTGAACACACGCTCTTA
GGAACTCTCGGGTGCAGCAGCATGTGACTACTTGTACCGTGCAACGGGGT
GCATATCCCCACTCCCGCACCCGACTTCATGATGTACGGGGCATGCAGGC
AGCACACATGCACCCACGACAATTGAACACGGCAGGCGATCGAACTCATA
GCCAGGTTGCGCATAGTATTCTAAAACTCTAAAACGAAGAGTTCCAGCTT
CGCCGCACCTCTGGCAACGCTTCAAATAACAGCCTGGTTATGCAAAATTG
TCGGTTTAGCACGTGGGGGCCCGTACAGCCGATGTATTTGCGAGACACGA
AGATATGTGCAACCCCAGAGAAGTCCCGCGCGTGGTCTGGCAAGGTCGTT
TACTCTCTTGTGCGTCCGTCCCACCTTTTTAATATTTTCCGCCTCAGCCA
CGCCTGTATCTTGCTGTGGTTGGTGTGAGTGGGACTCGGAACGTTCCAAG
GACGGTGCCGACTCGATTGGCGAGAAACAATATTTTAGTTGGGATACCGT
CAATGGCGGAGAAATAGCACCAGGTGCATTCGTTTATTTGATAGTATTTC
CTCGCGTTTTTTTCGCCCCCCCGTTGCCATCTCTCCGCGACCCCGGTGTG
GAAATGCAATGACCCCATTCGTTTAGCTTTTTCAAGGCACCTCGGTGCGA
TCGCTCCGACCGGCGCGATGCCCAATGAATTACACACGGCGGGCACGGAG
CTCGGCGATGTTGTATACACGCACCCCGGTGCCACCTCTCCGTGTTTTGC
GGTACTGCTCCATCCAAATCTAGTGGAAGCGCAACTGCCAACCTTTCCGC
CTCTCTCCGTATACTCTTGCTGTGCCTGTACAGCAATACAATAATGATAA
TGTACCCGAACGATTCCGAGAACGGTACCGGCACTAGCAATACAATAATG
ATAATGTACCCGAACGATTCCGAGAACGGTGCCGGCAATAGCAATACAAT
AATGATAATCTACCCGAACAATTCCGAGAACGGTGCCGGCAATAGCAATA
CAATAATGATAATGTACATGCCCGAACAATTCCGAGAACGGTGCCGGCAA
TAGCAATACAATATAGCAGTATGCCATAAAAAACGCACCTGTACCAGCCT
TCTTTGCTGTCTTCATACTACGGAGTTTGTCGATGGCCTTGGTTTTGCGC
AACAATTGTGTCAACCAACCATGCTGCGAGGCCGCCAGATAGTGTACGTT
GTCTGGAGAGGGGGAGAGTTGCAACAACTCTCCTATGCGCAACCTGGCCA
CTTGGCGCGTGCTTGAATATTGTGTGGCTCGCTGACTGAACTGTGCTCTC
GCGATCTTGTTTTGCGCTCGTTGCAGTCGCTTTGGAATTGATCTTGGTGT
CCGACTGGCTGCCATGGACTCTTTCAAGGACCTCCTAGCTGTGGTTGGAA
GGATCGAAGAGGCCATTAAGGGCGAGGATGCTATCAAGGTGACGATGCGC
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12325:2..2152-

>mRNA_E-fasciculatus_F_contig12325.1794.1 ID=mRNA_E-fasciculatus_F_contig12325.1794.1|Name=mRNA_E-fasciculatus_F_contig12325.1794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12325:2..2152- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACACCGACAGTTCGCAGGGCCGGTGATCAACAATCATAGCCAGGCAGC
AGGGTGTGCATTGTTGTACTCCAAACGACGGTTTTCAGCTCCGCCGCGCG
TCCACCGCCCCTCCCTGCAAATCGAGCGTGCTATCATCGCCACACCGACA
GTTCGCAGGGCCGGTGATCAACAATCATAGCCAGGCAGCAGGGTGTGCAT
TGTTGTACTCCAAACGACGGTTTTCAGCTCCGCCGCGCGTCCACCGCCCC
TCCCTGCAAATCGAGCGTGCTATCATCGTCGCTTTGGAATTGATCTTGGT
GTCCGACTGGCTGCCATGGACTCTTTCAAGGACCTCCTAGTCGCTTTGGA
ATTGATCTTGGTGTCCGACTGGCTGCCATGGACTCTTTCAAGGACCTCCT
AG
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