mRNA_E-fasciculatus_F_contig12312.1785.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12312.1785.1
Unique NamemRNA_E-fasciculatus_F_contig12312.1785.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12312.1785.1 vs. uniprot
Match: A0A6H5JMI9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI9_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 8.210e-73
Identity = 135/175 (77.14%), Postives = 137/175 (78.29%), Query Frame = 3 
Query:    3 LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSVVETSEDAANASSLGRRCLSADGRSWHRVTGAAAAARGPPLPAETSAPAATAGV---------GGTGAAVPRAVSVGWWSDLTLAAMSSAGDLAFLDTPPLETGPATATATVEITTAFRNRSAGDGGGVGGPRPPPLGPRC 500
            LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVS+VETSEDAA ASSLGRRCLSADGRSWHRVTGA A                             GGTGAAVPRAVSVGWWS+LTLAAMSSAGDLAFLD PPLE GPATA ATVEI  AFRN SAGD GGVGGPRPPPLGPRC
Sbjct:  165 LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAAVASSLGRRCLSADGRSWHRVTGATAXXXXXXXXXXXXXXXXXXXXXXXXXRPSGGGTGAAVPRAVSVGWWSELTLAAMSSAGDLAFLDAPPLEAGPATA-ATVEIAAAFRN-SAGDRGGVGGPRPPPLGPRC 337
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BLAST of mRNA_E-fasciculatus_F_contig12312.1785.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.350e-65
Identity = 132/167 (79.04%), Postives = 135/167 (80.84%), Query Frame = 3 
Query:    3 LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSVVETSEDAANASSLGRRCLSADGRSWHRVTGAAAAARGPPLPAETSAPAATAGVGG-TGAAVPRAVSVGWWSDLTLAAMSSAGDLAFLDTPPLETGPATATATVEITTAFRNRSAGDGGGVGGPRPPPLGPRC 500
            LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVS+VETSEDAANASSLGRRCLSADGRSWHRVTGAA                        TGAAVPRAVSVGWWS+LTLAA+SSAGDLAFLD P LE GPATA ATVEI TAFRN SAGD GGV GPRPPPLGPRC
Sbjct:  392 LFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTGAAXXXXXXXXXXXXXXXXXXXXXXXXTGAAVPRAVSVGWWSELTLAAISSAGDLAFLDAPLLEAGPATA-ATVEIATAFRN-SAGDRGGVAGPRPPPLGPRC 556
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12312.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMI9_9PHAE8.210e-7377.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FI79_ECTSI1.350e-6579.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12312contigE-fasciculatus_F_contig12312:2666..4023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size502
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12312.1785.1prot_E-fasciculatus_F_contig12312.1785.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12312 2666..4022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.4638815-CDS-E-fasciculatus_F_contig12312:2665..27091622927738.4638815-CDS-E-fasciculatus_F_contig12312:2665..2709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 2666..2709 +
1695995673.578502-CDS-E-fasciculatus_F_contig12312:2665..27091695995673.578502-CDS-E-fasciculatus_F_contig12312:2665..2709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 2666..2709 +
1622927738.4776857-CDS-E-fasciculatus_F_contig12312:3199..33091622927738.4776857-CDS-E-fasciculatus_F_contig12312:3199..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 3200..3309 +
1695995673.5902874-CDS-E-fasciculatus_F_contig12312:3199..33091695995673.5902874-CDS-E-fasciculatus_F_contig12312:3199..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 3200..3309 +
1622927738.4908655-CDS-E-fasciculatus_F_contig12312:3675..40221622927738.4908655-CDS-E-fasciculatus_F_contig12312:3675..4022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 3676..4022 +
1695995673.602558-CDS-E-fasciculatus_F_contig12312:3675..40221695995673.602558-CDS-E-fasciculatus_F_contig12312:3675..4022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12312 3676..4022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12312.1785.1

>prot_E-fasciculatus_F_contig12312.1785.1 ID=prot_E-fasciculatus_F_contig12312.1785.1|Name=mRNA_E-fasciculatus_F_contig12312.1785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
PCFSRDCELWLPPCRWCSTRQGTDWQCLTSREGLASSKLPRTPLTPHLSA
AGVFPQTAAPGIALRGQQQQQEGHRCRRRPPLLPPPPELAAPAPPSRGPC
PSGGGRTSPSRRCPPLAISPSSTPRPWRPAPPPLPPLSRSPPPSVTAALE
TGGGWGDRDPLRWAPGA
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mRNA from alignment at E-fasciculatus_F_contig12312:2666..4023+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12312.1785.1 ID=mRNA_E-fasciculatus_F_contig12312.1785.1|Name=mRNA_E-fasciculatus_F_contig12312.1785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1358bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12312:2666..4023+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTGTTTTTCCCGGGACTGCGAGCTGTGGCTCCCCCCGTGCAGGTGGGT
GTGTGCAAGCACGATATAGCAGGAATGTGGAACATTGTGAAGTGTTTTTG
CTGGTTTGTTTCGTCGCCAAGAGGGAAAGATGACCCAGGCTGGAGCACGC
GGCGTGGCAGGAATATGAGGTTTTGCTGGTTTGTTTCATCGCCAAGTTGG
TTCGGGAACCGCTCGTGATCGATCGAAGTTTCGATCAAATGCTCTCATGA
TTGTGTCTCTCCCGTTTTTGCGTCCGGTGCGCTGTGAAGCGCGTGCGCGC
TTTCAAAAGCTCCACCGCACGCGGGTAAAACTCCTCCAGAACGGGCGCGC
CTTGGGTGAATGGTTTCCCTAACCCAAACCCTAAGTGTCTCGCTCCCGTA
GAGAACTCTTCTCTTCCGGTGTTTCATGATACAACAACAGCACAACAACA
GTACTGCACTGCAGCACTGAAGTTGCTGCAATCGTTGTTTTATTTTTTTC
GTGCGTTTTTGCGCCCGTCGGTTGTTTCGCTCAGGTGGTGTTCAACCCGT
CAGGGGACAGACTGGCAGTGCTTGACATCGCGGGAGGGGTTAGCGTCGTC
GAAACTTCCGAGGACGCCGCTAACGCCTCATCTCTCGGCCGCAGGTATGC
TACATAGCACACGGCTGTCGTTCGCGGTATCGTCTCGACCGTAGAGAAGT
GCGGTAGCGAAGATAAGGTACACTTGAAGTAAAGTTTGTTCAGGCTCGAC
CGCTGCTCTCAAGCTCAAGGTGTGAGCCAAACGACGCTACTCTGTAGTGC
TATGGTGGCATGCATGCACCTCCTGTAGAGTTTGTTCCGATTGGACTACT
GCTCTCCGCTCGAGGTTTGAGCCAGGCCATGCTACTCTTTGCCAAAAAAC
ACTCTGTCGTGTGTAATTGTCTGGAGAGAGAATGAGGACTTGCTTGTTTC
AGCCCCCATCAACTCGATACTAACCTACCCCCCCCAATCGTTCGTGTCGC
TTCCCCTAAGGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTACG
GGGGCAGCAGCAGCAGCAAGAGGGCCACCGCTGCCGGCGGAGACCTCCGC
TCCTGCCGCCACCGCCGGAGTTGGCGGCACCGGCGCCGCCGTCCCGCGGG
CCGTGTCCGTCGGGTGGTGGTCGGACCTCACCCTCGCGGCGATGTCCTCC
GCTGGCGATCTCGCCTTCCTCGACACCCCGCCCTTGGAGACCGGCCCCGC
CACCGCTACCGCCACTGTCGAGATCACCACCGCCTTCCGTAACCGCAGCG
CTGGAGACGGGGGGGGGGTGGGGGGACCGAGACCCCCTCCGCTGGGCCCC
CGGTGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12312:2666..4023+

>mRNA_E-fasciculatus_F_contig12312.1785.1 ID=mRNA_E-fasciculatus_F_contig12312.1785.1|Name=mRNA_E-fasciculatus_F_contig12312.1785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12312:2666..4023+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTGTTTTTCCCGGGACTGCGAGCTGTGGCTCCCCCCGTGCAGCCTTGT
TTTTCCCGGGACTGCGAGCTGTGGCTCCCCCCGTGCAGGTGGTGTTCAAC
CCGTCAGGGGACAGACTGGCAGTGCTTGACATCGCGGGAGGGGTTAGCGT
CGTCGAAACTTCCGAGGACGCCGCTAACGCCTCATCTCTCGGCCGCAGGT
GGTGTTCAACCCGTCAGGGGACAGACTGGCAGTGCTTGACATCGCGGGAG
GGGTTAGCGTCGTCGAAACTTCCGAGGACGCCGCTAACGCCTCATCTCTC
GGCCGCAGGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTACGGG
GGCAGCAGCAGCAGCAAGAGGGCCACCGCTGCCGGCGGAGACCTCCGCTC
CTGCCGCCACCGCCGGAGTTGGCGGCACCGGCGCCGCCGTCCCGCGGGCC
GTGTCCGTCGGGTGGTGGTCGGACCTCACCCTCGCGGCGATGTCCTCCGC
TGGCGATCTCGCCTTCCTCGACACCCCGCCCTTGGAGACCGGCCCCGCCA
CCGCTACCGCCACTGTCGAGATCACCACCGCCTTCCGTAACCGCAGCGCT
GGAGACGGGGGGGGGGTGGGGGGACCGAGACCCCCTCCGCTGGGCCCCCG
GTGCAGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTACGGGGGC
AGCAGCAGCAGCAAGAGGGCCACCGCTGCCGGCGGAGACCTCCGCTCCTG
CCGCCACCGCCGGAGTTGGCGGCACCGGCGCCGCCGTCCCGCGGGCCGTG
TCCGTCGGGTGGTGGTCGGACCTCACCCTCGCGGCGATGTCCTCCGCTGG
CGATCTCGCCTTCCTCGACACCCCGCCCTTGGAGACCGGCCCCGCCACCG
CTACCGCCACTGTCGAGATCACCACCGCCTTCCGTAACCGCAGCGCTGGA
GACGGGGGGGGGGTGGGGGGACCGAGACCCCCTCCGCTGGGCCCCCGGTG
CA
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