mRNA_E-fasciculatus_F_contig1231.1783.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1231.1783.1
Unique NamemRNA_E-fasciculatus_F_contig1231.1783.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1231.1783.1 vs. uniprot
Match: D8LM15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM15_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.670e-32
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 2 
Query:  314 MSHSALGLPNPSVWNLTAPAISGNVKLDTVILGPRESSMRALLNSLQTRSWMTCWRGLAGRWTPWSSA 517
            MS SAL LP  SVWNLTAPA+SGNVKLDTVIL PRES MRA LNSLQTRSWMTCWRGLAGRWTPWSSA
Sbjct:    1 MSQSALSLPKASVWNLTAPAMSGNVKLDTVILAPRESFMRASLNSLQTRSWMTCWRGLAGRWTPWSSA 68
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BLAST of mRNA_E-fasciculatus_F_contig1231.1783.1 vs. uniprot
Match: A0A6H5KL14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL14_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.580e-23
Identity = 58/110 (52.73%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  314 MSHSALGLPNPSVWNLTAPAIS------------------------------------------GNVKLDTVILGPRESSMRALLNSLQTRSWMTCWRGLAGRWTPWSSA 517
            MSHSAL LP  S WNLTAPA+S                                          GNVKLDTV L PRES MRA LNSLQTRSWMTCWRGLA RWTPWSSA
Sbjct:    1 MSHSALSLPKASAWNLTAPALSAFQDIFMPVLAPHPARSALAGKRQRNSMLLLLLPACDFLVSAGNVKLDTVFLAPRESFMRASLNSLQTRSWMTCWRGLARRWTPWSSA 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1231.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM15_ECTSI2.670e-3288.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL14_9PHAE4.580e-2352.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1231contigE-fasciculatus_F_contig1231:3983..7992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002480.1
Exons4
Model size1149
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1231.1783.1prot_E-fasciculatus_F_contig1231.1783.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1231 6097..7363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.2782989-UTR-E-fasciculatus_F_contig1231:3982..41301622927738.2782989-UTR-E-fasciculatus_F_contig1231:3982..4130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 3983..4130 +
1695995673.4844217-UTR-E-fasciculatus_F_contig1231:3982..41301695995673.4844217-UTR-E-fasciculatus_F_contig1231:3982..4130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 3983..4130 +
1622927738.2897446-UTR-E-fasciculatus_F_contig1231:5931..60961622927738.2897446-UTR-E-fasciculatus_F_contig1231:5931..6096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 5932..6096 +
1695995673.492546-UTR-E-fasciculatus_F_contig1231:5931..60961695995673.492546-UTR-E-fasciculatus_F_contig1231:5931..6096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 5932..6096 +
1622927738.3487794-UTR-E-fasciculatus_F_contig1231:7363..79921622927738.3487794-UTR-E-fasciculatus_F_contig1231:7363..7992Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 7364..7992 +
1695995673.5404298-UTR-E-fasciculatus_F_contig1231:7363..79921695995673.5404298-UTR-E-fasciculatus_F_contig1231:7363..7992Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1231 7364..7992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.306216-CDS-E-fasciculatus_F_contig1231:6096..61631622927738.306216-CDS-E-fasciculatus_F_contig1231:6096..6163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 6097..6163 +
1695995673.5008533-CDS-E-fasciculatus_F_contig1231:6096..61631695995673.5008533-CDS-E-fasciculatus_F_contig1231:6096..6163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 6097..6163 +
1622927738.3230212-CDS-E-fasciculatus_F_contig1231:6814..68801622927738.3230212-CDS-E-fasciculatus_F_contig1231:6814..6880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 6815..6880 +
1695995673.5090184-CDS-E-fasciculatus_F_contig1231:6814..68801695995673.5090184-CDS-E-fasciculatus_F_contig1231:6814..6880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 6815..6880 +
1622927738.3349566-CDS-E-fasciculatus_F_contig1231:7289..73631622927738.3349566-CDS-E-fasciculatus_F_contig1231:7289..7363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 7290..7363 +
1695995673.5249214-CDS-E-fasciculatus_F_contig1231:7289..73631695995673.5249214-CDS-E-fasciculatus_F_contig1231:7289..7363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 7290..7363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1231.1783.1

>prot_E-fasciculatus_F_contig1231.1783.1 ID=prot_E-fasciculatus_F_contig1231.1783.1|Name=mRNA_E-fasciculatus_F_contig1231.1783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MSHSALGLPNPSVWNLTAPAISGNVKLDTVILGPRESSMRALLNSLQTRS
WMTCWRGLAGRWTPWSSA*
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mRNA from alignment at E-fasciculatus_F_contig1231:3983..7992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1231.1783.1 ID=mRNA_E-fasciculatus_F_contig1231.1783.1|Name=mRNA_E-fasciculatus_F_contig1231.1783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4010bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1231:3983..7992+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTTTCTGGAAATTTGTGGGATCCAGACACACCGCACCACAGCAACAGC
AGCGCGCAGTAGCACTCTCTCTCTGCGGCGCCTTGCTTGAGACAGGAGGA
CAAAAACAACTGCAGCAAGAATCATCCATCGCCACGGGTAAAAGGAAGGT
GAGAAAAGAGAGTGTCGTCGTGTCGTCCCGCTCTCCGAACCATGGCTTCC
GGTTGCCAAAGAGCGCTCATTACGTAAGATATCACACCCAAATCGTCGTC
TGCTGTAAGCAAGGTATGTTGGTACAGCAGAGTTAGCTGTCTCTGCGAAC
CACTGCTGCTGCTGCTCCTGTGTTTCAGGGTTGTCGGTTGTCGACGCTGA
CGACCTTTGGAAGCCAGTCTTTCTCTAACAACCCGTTTCATGGGTTTTCC
CAACCTTCACCGTTTCGACACGAACATACTGACTGCTACTATTGTACTCG
TGCTCGGTGCCAGAAGCCAAGTGGTGTGGGCGCTCTATCTATTTTTTTTT
AGTCAGTCTTAGTCTTGCATGTGATCTATCCAAGGCAGAGGCAGAGCGGA
GACGCGTGAATGTAGAAGAGATGGAGGGAGGCAGGGAGAGAGCACGCGAG
GGGGGAGGAAGAGACACATGAAATAAAGTGTATGAGAGGTGCTGGGAGAG
AAGAAAAATGAGCACGTAATGCACACTACTCTTGCACTACTTCTCCAGAC
TTCTTGAGGAAACAGCAATCACGCATGTTACTACACACAGCAGCAGGAGT
CATCACCCATCAGCACTTTCCCCGATGTCGATCCCGCAAATCCTCCACAT
GGGTCTTCATGCGCAGTTACGGAACGGTTAGGAATCCGTCTGGTGGTGCT
ACAGTACATACATTCACGCGTGTCGGAGGCGGCACAAGTAATATTTTTCC
TTCCAAGATCGTCCTTCGCCAGCAGCAACAGCTCTTGGTTACAATACAAC
CTGGGACCGTGCGAAGGGTTGTATTTCCCGAAGGGCGGTGCAGTCATTTT
TCCTCAGTAGCTTTCGCTGTAGTTGGGGTCCAAAGTTCCTGCAAGCTCCG
AAGAGATGCTGGTTAAATTTTTTGCACATTTTCATCATCGCACGCTTACA
TGAAAGTCATCCCACGATGCCGCGCCGAAACCAACGCCGCCAACTCCAAA
ACCCCCAAAATACAACATTTTTACGTCCTGCCCCAAACCAAGTTTTAATA
ACTGTTGAATTCAAGGCAAAGCTAACAAATACGTTGTTATTATCATGGTA
CCACAGCAGTCAGCGCTGAAGTTCTGAGCTCCTTGATTCTCCTCAACGAA
GTTGAAGATAAGATTCGTTCCCGTTTCGAGTTATCTTCCCAACAACTTTG
GAGGTAGTCTGCATAGCATGTCCAGCTCCTATGATCAGAGCGTCGCTGGA
AAGACCGTGCCGCAGCGGAGATTGACGATTTATCCAAGCCTTCAAAGCTG
TTGTATCACCGAAGTATGTTAGGCCTTGCGTCAGGCTCATGTCTCTCATG
AGTGAGTGGACCAGGGTGGCGCTGCATGCTGTTATATTTCTCAATCTCCG
GCGATAGGGATCATATTGACCCGAGAGACAAGCGCACAAAACAAACGCCC
TCGTTCGTCCCGCCGATTGGTAATAAGAAACAACGGGAACGAACGATGTC
GCGAATGACGGCAGGCATTTCGAGTCGCGCGTTCGCAGCCGTCATTCTTT
GTGGTGAGGTCAACCAAGGTACGGTTGGGCCAAAGACAAGTGCTCTACAT
ACAACTATCCTGCCTCGTCAAGCTCCTCCTGTTGCGTGGATGTACAGCAC
GTTCGCCGCGGAAACGCGCCTACAGCACCCCGTGCCAGCGTGTTCCGTGC
TGTCCACACAGCAGTAGTTAGTTGTGATACGTGGAGTTGTTCTCCAGCGG
GGCTTCCTATTAACCGACCCGCCCGCGCGCTTGGATTTTGCAACAGCAGA
CAGGTGTTCCGGTTAACGATACAGAGACGGAGAGCGACAGGTGAGAAGGA
GGGAGAAGCAAGAGCAGGTCTACTCCACCAGCTACTACTGCTGCTGCTGG
TGTCGCCCTGCCGTGGACATGCTGCATCCCGCTGGTGCCGTCAGAAGACA
GAGCCGGAGGCTGGATGTCACACTCCGCGCTAGGTCTCCCGAATCCGTCT
GTGTGGAATCTCACCGCGCCAGCTATATCAGGTAGCTTGTTCTTCTGTGG
GCTATCATGCCCCGTAAACCCCTCGGGGAGAAGGAGGGAACCTCCAGACC
GTCACCCTATGGTAGATTAGGGACGAAGGGGAGGCAAGATTACCTGTAAA
GGTCCCCGTTCCTTGTGTTGCGTCGTTTTTCGAGGGAAACATTCGAGCTA
TTACTACATGCGCATGTTCAGAGAGAGTTTGTCAAAGAGTGGGAGGGCGT
GTGAACAAACTCATGACCCGGGTAAGTAAGTCTCTTCGTCGTGGCGGAGA
GGCCTAGATTTAGGATCGGCCACTGCCTGTGCCGCCTATCACTGTGTGGT
GTCTTCTAACCCCCGGACCGTCACCATGGCTTATTTACAGCTTGTGATCG
CTGTTGTTGTTGCTGCTCCACAGGTCCCCGCGTACGTTCTGTTCTACGTT
CCCTGCTGATGTACACTACGCCTAACTTTCGGTGGGACCCATGCACGTCG
CGCTGCTTGTTTTGAACCGCCGCTACGCCATAGGCGTGTGCAAAAGCTTT
TCAGGTTTCGTGGATATTTTCATGCCCGTTCTTGCTCCACATCCGGCACG
TTCGGCGTTAGGTTTGAAAGAACGACGGCCGAACTCCATGCTGCTGCTGT
CGCTGCCGCCGTGTGGATTCTCGTTTGCGCAGGCAACGTCAAGCTCGACA
CGGTTATCTTGGGGCCGCGGGAGAGCTCCATGCGGGCATTGTTGAACTGT
GAGATTGTCTGTGGAGTTAGCGCCCTGACGATTTGTTTTAATTCTTCTGC
CGCTATATTGTGCGGCTAGTTGTGTTATCCACCGTTTCTGTATGGCGGGG
TATCTATTTGGCCTATGTACGGATCCCAGTCGGATGTAGCCCACATAAAT
TTCGTGGATTGGTTGTATTTTCTATGCTTTTGGTCATTGGGTGCGATGTA
CATAGTGCGAGTTGTGCTTTTCCAGGACTTGGTCATTGTCGCGTACGTAC
TCAGCACTTGAACCGCCCCCCTTCGCATTATGTTTTGTTCGGGACAACGT
GCAGATCGTCGCGCATTTGTTCCCCCAAACTATGGCAGGAGGTGTCTTGC
TTCCCCTCGCCCCAACGAGAACCCCACTCTTCCGCGCTCTGTTGTCTTGC
TCCCAAGCCTTGCAAACGAGATCCTGGATGACCTGTTGGAGGGGTCTTGC
AGGGAGATGGACTCCGTGGTCGTCGGCTTAGCTGCGGTTTCCGTCAGAGA
CAGCGTGTCTTAGATAGCAAAAGGTGTGGAGAGACACTGCTGCTGTCTCT
TCTCTTTCGTGTATCTCCGGGCAGGAAGTGGAGCTGTGTGTTTATAGCTG
GAGAGGAAAGGACTGGCGATGATGTGACTGACCTTTTGCGGAAGGAGAAA
GCAAGAACGTGTTGCGTGTAGGTGCGGGGTGACACTCCTCCTCCCATCAT
CCCCGTACAGAGAGTCTGGACAAGGGACGCGATAGACAGGCGGGTAGATT
AGACACAGAGACCTGACCCCAAGTACGGTGGGCCTTAGGGAGACAATGCA
ATACATGGTACATAATATATATTTAGTCTTAAGGTTCGCGAAGTCTTTGC
TGTTTATACGTAAGAATATCCCCGATTTTGCTGTAGATAACATTTACCAT
CGTTAACGTGCGTTCTGGTCGGTTTCCTTCTTGATGCATTACAAGTACTT
TAGTAGCTCGTTTGCTGCCGTGCTCCCCTTGCTAGGAAGAGTGCAGTTTT
CGGAGTGTCTCTCATCCCGTGCGAGGTTTGTGTCGAGCCAGGTTGAGGTA
TCGCGATCGATGTTAATCTAACGCAACGTTGTGGAGGGCCTTCAATGTAT
TCTTCTGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1231:3983..7992+

>mRNA_E-fasciculatus_F_contig1231.1783.1 ID=mRNA_E-fasciculatus_F_contig1231.1783.1|Name=mRNA_E-fasciculatus_F_contig1231.1783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1231:3983..7992+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCACACTCCGCGCTAGGTCTCCCGAATCCGTCTGTGTGGAATCTCAC
CGCGCCAGCTATATCAGATGTCACACTCCGCGCTAGGTCTCCCGAATCCG
TCTGTGTGGAATCTCACCGCGCCAGCTATATCAGGCAACGTCAAGCTCGA
CACGGTTATCTTGGGGCCGCGGGAGAGCTCCATGCGGGCATTGTTGAACT
GCAACGTCAAGCTCGACACGGTTATCTTGGGGCCGCGGGAGAGCTCCATG
CGGGCATTGTTGAACTCCTTGCAAACGAGATCCTGGATGACCTGTTGGAG
GGGTCTTGCAGGGAGATGGACTCCGTGGTCGTCGGCTTAGCCTTGCAAAC
GAGATCCTGGATGACCTGTTGGAGGGGTCTTGCAGGGAGATGGACTCCGT
GGTCGTCGGCTTAG
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