mRNA_E-fasciculatus_F_contig12304.1779.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12304.1779.1
Unique NamemRNA_E-fasciculatus_F_contig12304.1779.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12304.1779.1 vs. uniprot
Match: D8LFG9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG9_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.210e-127
Identity = 194/199 (97.49%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 NSLKYLMRRRLRRGLTSLKGSAGEEAKACLALETRGVPEGALLEFAISVYMMVQASSEDRALYIFSILDTNGNKQLDRREMQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 597
            +SLKYLMRRRLRRGLTSLKGSAGEEAKACLA+ETRGVPEGALLEFAISVYMMVQAS+EDRALYIFSILDTNGNKQLDR+E+QAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ
Sbjct:  159 SSLKYLMRRRLRRGLTSLKGSAGEEAKACLAMETRGVPEGALLEFAISVYMMVQASAEDRALYIFSILDTNGNKQLDRQELQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 357
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BLAST of mRNA_E-fasciculatus_F_contig12304.1779.1 vs. uniprot
Match: A0A6H5KIH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH8_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 1.570e-124
Identity = 192/199 (96.48%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 NSLKYLMRRRLRRGLTSLKGSAGEEAKACLALETRGVPEGALLEFAISVYMMVQASSEDRALYIFSILDTNGNKQLDRREMQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 597
            +SLKYLMRRRLRRGLTSLKGSAGEEAKACLA++TRGVPEGALLEFAISVYMMVQAS+EDRALYIFSILDTNGNKQLDR+E+QAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLD+VVANQQ
Sbjct:  286 SSLKYLMRRRLRRGLTSLKGSAGEEAKACLAIKTRGVPEGALLEFAISVYMMVQASAEDRALYIFSILDTNGNKQLDRQELQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDEVVANQQ 484
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BLAST of mRNA_E-fasciculatus_F_contig12304.1779.1 vs. uniprot
Match: A0A485LQK2_9STRA (Aste57867_24214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQK2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.430e-11
Identity = 46/149 (30.87%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:  130 EFAI----SVYMMVQASSEDRALYIFSILDTNGNKQLDRREMQAALLLYMKSLARVIPTVVAHELE-DMGR-LIDIDSEQVQEEIVSV----VDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGK 546
            EFA+     +YM +  S +++A+Y+F I+D+ G+  L   E++ AL   ++ +  + P ++  +LE  +G      +  ++ EE + V    ++ LM +V  +IP AV Q+F    +     IS DEW G WQ  PEL+++M++ G+ K
Sbjct:  318 EFAVRARMGLYMTLFGSPDEKAVYLFQIVDSTGDGVLSPDEVRRALERRIRVVKDIFPMLLQEQLEYHLGDDATTAEQARLNEECMKVGLMAIESLMAQVETDIPLAVNQVFLSTPLSTPNRISLDEWRGLWQGHPELVELMTIDGMKK 466
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12304.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFG9_ECTSI2.210e-12797.49EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KIH8_9PHAE1.570e-12496.48EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A485LQK2_9STRA4.430e-1130.87Aste57867_24214 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12304contigE-fasciculatus_F_contig12304:1704..3909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.3
Seed ortholog evalue3.1e-97
Seed eggNOG ortholog2880.D8LFG9
Preferred namecoq10
KEGG koko:K18588
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0015980,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.ubiquinone binding
EggNOG OGsCOG2867@1,KOG3177@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-04_002220.1
Exons3
Model size657
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12304.1779.1prot_E-fasciculatus_F_contig12304.1779.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12304 1704..3891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927737.9477773-CDS-E-fasciculatus_F_contig12304:1703..19761622927737.9477773-CDS-E-fasciculatus_F_contig12304:1703..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 1704..1976 -
1695995673.3106198-CDS-E-fasciculatus_F_contig12304:1703..19761695995673.3106198-CDS-E-fasciculatus_F_contig12304:1703..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 1704..1976 -
1622927737.9634216-CDS-E-fasciculatus_F_contig12304:2692..28511622927737.9634216-CDS-E-fasciculatus_F_contig12304:2692..2851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 2693..2851 -
1695995673.3282747-CDS-E-fasciculatus_F_contig12304:2692..28511695995673.3282747-CDS-E-fasciculatus_F_contig12304:2692..2851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 2693..2851 -
1622927737.9740098-CDS-E-fasciculatus_F_contig12304:3684..38911622927737.9740098-CDS-E-fasciculatus_F_contig12304:3684..3891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 3685..3891 -
1695995673.338695-CDS-E-fasciculatus_F_contig12304:3684..38911695995673.338695-CDS-E-fasciculatus_F_contig12304:3684..3891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12304 3685..3891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927737.9880059-UTR-E-fasciculatus_F_contig12304:3891..39091622927737.9880059-UTR-E-fasciculatus_F_contig12304:3891..3909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12304 3892..3909 -
1695995673.3510613-UTR-E-fasciculatus_F_contig12304:3891..39091695995673.3510613-UTR-E-fasciculatus_F_contig12304:3891..3909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12304 3892..3909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12304.1779.1

>prot_E-fasciculatus_F_contig12304.1779.1 ID=prot_E-fasciculatus_F_contig12304.1779.1|Name=mRNA_E-fasciculatus_F_contig12304.1779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
MRRRLRRGLTSLKGSAGEEAKACLALETRGVPEGALLEFAISVYMMVQAS
SEDRALYIFSILDTNGNKQLDRREMQAALLLYMKSLARVIPTVVAHELED
MGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCI
SEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQREGGDDL
PPPPPLPPPPPP*
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mRNA from alignment at E-fasciculatus_F_contig12304:1704..3909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12304.1779.1 ID=mRNA_E-fasciculatus_F_contig12304.1779.1|Name=mRNA_E-fasciculatus_F_contig12304.1779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12304:1704..3909- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACAGCTTGAAGTACCTCATGCGGCGGCGATTGCGCCGCGGCCTGACTAG
CCTCAAGGGGTCGGCCGGGGAAGAGGCGAAAGCGTGCCTGGCGTTAGAGA
CGAGAGGCGTGCCGGAGGGGGCGTTGCTGGAGTTCGCCATCTCGGTGTAC
ATGATGGTGCAGGCCTCTTCGGAGGACCGGGCCTTGTACATATTCTCCAT
CCTCGACACAAACGGCAACAAGCAGGTCAGTTTTTTGTTGGTATGGTGGC
GTCAATACGCAGCCGTGTTTTGCACCATTTCTGGCAAGCAATAGTCGATT
AAATAATACGTGGTGGTGGTGGCACAAGGGTTGTTGTGGCGCGACTTCTT
TTCGTTAGCCGTTAGCAGAAAACGGTACTCTGGTGTATGTTCGGTTAGAG
ATCATCGCACCATTATGGTGGTGAAAAATGTCACCATTATGGTGGTGGAA
AGTGTACCCGATAGTAGCGTTGACCAATGGAAAGGCGCCAGGCGTGACGG
GGGCACCCCCCCCCCCCCCCCCCCCCCCCCCGCGCGTGCAGGACATTTTG
AAGTCTGCGGAGTCCCCCGACAGGGAGGTCGCGGGGGACACGGCTACCCT
TCTCTAGTTTTTAGGCGAAGAGCCTGACCCGGAGTCGCTTTTTTCGGTTG
CGCGGTGTTGAGGGCATGGAGTGCTTCGATTTTCTGGTCTAACGTATGAA
AACACGTTCGGTATTCAATGTTCTGCTTCTGTGCCAACCTGTTGTTTTTT
ATTCTCCAGTTATTGTTTTCTGTTCTTATATGCATATGGTGCTGTGTCAT
CCTGTTGTTTTTAGTCTCCAGTCTTGTTTTGTTCGCTTCTACTTCTATGC
CGCTGTGTCAACCTGTCGTTCTTTATTCTCCAGTATTGTTTTGTCCTCTT
CTACCAGGATGCTGCTGTATCAACCTGTTGTGTTATTCTCCAGTACGCTG
CTGTGTAATCCTGTTGTTTTTTCGTCCATTTTTTTCTTCTTCTCCTACCT
GCTGCTGTGGTCGCTGTTGTTTTCTTGTTCTTTATTTTTATTTTTATTTT
TATTTCAGCTGGACCGCCGAGAGATGCAGGCGGCGCTTCTTTTGTACATG
AAGAGCCTGGCCAGAGTCATCCCGACCGTGGTGGCCCACGAGCTCGAGGA
CATGGGCAGGCTGATCGACATCGACAGCGAACAGGTCCAGGAGGAGATCG
TGTCCGTCGTGGACGAAGTAAGTCGGTCCGTCTTTCTTCTTGTGTTTGAG
TCCGTCTTTCTTGTGTACCGGTGACCCATGACTCCGTCATTCTACGCTTA
ATTCTGTCTCAATTCCTGTGTAGTGGTAAGGCTTGGTTCCGTCTTTCTTC
TTGTGTACCGGTAACGCTTGCTTGACTCCGTCTTCTTCTTGGGTACTGGT
AACGCTTAAGCCAGTCTCTCTTGTGTAGCGCTTAATTCCGTCTTTGTTTT
TGCCTAATGCTACTGCTGTGACGTTCTATGGATATTTATCCTCCTCTGTT
CTGTTCACGTCTGCTTTGGTCTCTTTTCCCGCCTCTCTGTTGTATAATAG
TATACATCTCTTGAAATTCAAAAAGTGGTATCATGTACTGGCATCGACCG
TGCCAACCAGTTGACCAATGGAAATACTTCAGTCTCACGGCGACTGACAA
ACAGAAAATGCTCCCAAAGGCCATGATCTGTATGTTTTGTGTGTATTTTT
TTACATAGACAGCGCTGACCGGCTGTCCAATGAGAAGACGTCAGTCTCCA
GTGCGGGTTGTGTGTGAATTTGTTGTTGTTATTAGCATCGACCGTGCTAT
CCGGCTGATCATTGGAAAGGACGTCGGTCTCAGTGCGGGTGAGAATGCTT
CTAAAAAGGCCTGTTCTGTTTGTGTGTGTGTTGTTTTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCCTATGCAGTTGATGCACGAGGTCAC
CGCAGAAATCCCGCGAGCCGTGGAGCAGATCTTCGAAGAGCTGGGGGTGA
TCGAGGCCGGCTGCATCTCGGAGGACGAGTGGGAAGGTGCCTGGCAGAAC
TTCCCCGAGCTGCTAGACATGATGAGTCTCCGCGGATTGGGCAAGACGGC
GCACTGGGCCGCCATAGTCTTGGATCAGGTTGTGGCCAATCAGCAGAGAG
AAGGGGGTGACGACTTGCCGCCGCCACCGCCGCTGCCACCGCCGCCGCCG
CCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12304:1704..3909-

>mRNA_E-fasciculatus_F_contig12304.1779.1 ID=mRNA_E-fasciculatus_F_contig12304.1779.1|Name=mRNA_E-fasciculatus_F_contig12304.1779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12304:1704..3909- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCGGCGATTGCGCCGCGGCCTGACTAGCCTCAAGGGGTCGGCCGG
GGAAGAGGCGAAAGCGTGCCTGGCGTTAGAGACGAGAGGCGTGCCGGAGG
GGGCGTTGCTGGAGTTCGCCATCTCGGTGTACATGATGGTGCAGGCCTCT
TCGGAGGACCGGGCCTTGTACATATTCTCCATCCTCGACACAAACGGCAA
CAAGCAGATGCGGCGGCGATTGCGCCGCGGCCTGACTAGCCTCAAGGGGT
CGGCCGGGGAAGAGGCGAAAGCGTGCCTGGCGTTAGAGACGAGAGGCGTG
CCGGAGGGGGCGTTGCTGGAGTTCGCCATCTCGGTGTACATGATGGTGCA
GGCCTCTTCGGAGGACCGGGCCTTGTACATATTCTCCATCCTCGACACAA
ACGGCAACAAGCAGCTGGACCGCCGAGAGATGCAGGCGGCGCTTCTTTTG
TACATGAAGAGCCTGGCCAGAGTCATCCCGACCGTGGTGGCCCACGAGCT
CGAGGACATGGGCAGGCTGATCGACATCGACAGCGAACAGGTCCAGGAGG
AGATCGTGTCCGTCGTGGACGAACTGGACCGCCGAGAGATGCAGGCGGCG
CTTCTTTTGTACATGAAGAGCCTGGCCAGAGTCATCCCGACCGTGGTGGC
CCACGAGCTCGAGGACATGGGCAGGCTGATCGACATCGACAGCGAACAGG
TCCAGGAGGAGATCGTGTCCGTCGTGGACGAATTGATGCACGAGGTCACC
GCAGAAATCCCGCGAGCCGTGGAGCAGATCTTCGAAGAGCTGGGGGTGAT
CGAGGCCGGCTGCATCTCGGAGGACGAGTGGGAAGGTGCCTGGCAGAACT
TCCCCGAGCTGCTAGACATGATGAGTCTCCGCGGATTGGGCAAGACGGCG
CACTGGGCCGCCATAGTCTTGGATCAGGTTGTGGCCAATCAGCAGAGAGA
AGGGGGTGACGACTTGCCGCCGCCACCGCCGCTGCCACCGCCGCCGCCGC
CATGATTGATGCACGAGGTCACCGCAGAAATCCCGCGAGCCGTGGAGCAG
ATCTTCGAAGAGCTGGGGGTGATCGAGGCCGGCTGCATCTCGGAGGACGA
GTGGGAAGGTGCCTGGCAGAACTTCCCCGAGCTGCTAGACATGATGAGTC
TCCGCGGATTGGGCAAGACGGCGCACTGGGCCGCCATAGTCTTGGATCAG
GTTGTGGCCAATCAGCAGAGAGAAGGGGGTGACGACTTGCCGCCGCCACC
GCCGCTGCCACCGCCGCCGCCGCCATGA
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