|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1225.1741.1 vs. uniprot
Match: A0A6H5JW67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW67_9PHAE) HSP 1 Score: 189 bits (481), Expect = 5.670e-50 Identity = 253/386 (65.54%), Postives = 272/386 (70.47%), Query Frame = 1
Query: 223 RQGREGRVEGLLVFGRSQRPNGLEGELYFPDVVPKVDPVDFHDSGEEESGNYDLIEDLVTEETYKVAKDQALEFYASGNGPRLERARARAXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSGLAPQHGSSNDEGNRGRSARSGGRGGFSFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALEEDEERYWSETPSGVFASSSXXXXXXXXXXXXXXXXPEARPIAADATSTAVNVGDGIAGNGAAPPRLSAASGCDSGSSGG--AAPQAGGDVVGAGGAASTSGAVVGAGVQANGGASGASTESVGAGENDMDVDGEEEAGLAAGKGXXPAXXXXAARGVAARQSQRES 1374
RQG+ GRV+G+L++GRS+ PNGLEGE +FPDVVPKVDPVDFHDSGEEESGNYDL+EDLVTEETYKVAKDQALEFYASG+GPRLERA XXXXXXXXXXXXXXXXXXXXXX GT SGL P+ GSS+ S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX EEALEED ERYWSETPSGVFASSSXXXXXXXXXXXXXX P+AR IAA A S A GD + GNGAA PRL AA+G +G+SG A+ + G VVGA S SG V GAS E V AGENDMD XX XXXX GV ARQSQR+S
Sbjct: 24 RQGQAGRVDGILLWGRSELPNGLEGEQFFPDVVPKVDPVDFHDSGEEESGNYDLVEDLVTEETYKVAKDQALEFYASGSGPRLERAXXXXXXXXXXXXXXXXXXXXXXXXXXASG-GTSSGLVPRQGSSDXXXXXXXXXXXXXXVRSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGENGGTKKKDDGADXXXXXXXXXXREEALEEDLERYWSETPSGVFASSSXXXXXXXXXXXXXXR-PDARLIAATAASGADQSGDRVGGNGAARPRLGAATGRANGASGSGDASLENRGGVVGA---YSASGGVXXXXXXXXXXXXGASAEKVRAGENDMDXXXXXXXXXXXXXXXXXXXXXXXXXGVDARQSQRDS 404
BLAST of mRNA_E-fasciculatus_F_contig1225.1741.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 141 bits (355), Expect = 5.540e-32 Identity = 140/399 (35.09%), Postives = 154/399 (38.60%), Query Frame = 1
Query: 223 RQGREGRVEGLLVFGRSQRPNGLEGELYFPDVVPKVDPVDFHDSGEEESGNYDLIEDLVTEETYKVAKDQALEFYASGNGPRLERARARAXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSGLAPQHGSSNDEGNRGRSARSGGRGGFSFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALEEDEERYWSETPSGVFASSSXXXXXXXXXXXXXXXXPEARPIAADATSTAVNVGDGIAGNGAAPPRLSAASGCDSGSSGGAAPQAGGD--VVGAGGAASTSGAVVGAGVQANGGASGASTESVGAGENDMDVDGEEEAGLAAGKGXXPAXXXXAARGVAARQSQRESDGKGLAGEADSDD 1413
RQG+ GRV G+L++GRS+ PNGLEGE +FPDVVPKVDPVDFHD+GEEESGNYDL+EDLVTEETYK PEAR +AA A S A GDG+ GNGAA PRL ASG +G+S VVGA S S V GA VQANGG SGAS E + AGENDMDVD EEE G A KG PA AARGV ARQSQRES+GKGLAGE DSDD
Sbjct: 30 RQGQAGRVGGILMWGRSELPNGLEGEHFFPDVVPKVDPVDFHDAGEEESGNYDLVEDLVTEETYK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEARHMAATAASEADKSGDGVGGNGAARPRLGGASGRANGTSXXXXXXXXXXXXVVGA---DSASXGVAGASVQANGGTSGASAERIRAGENDMDVDEEEEGGSVAEKGKGPARRPAAARGVDARQSQRESEGKGLAGEVDSDD 235
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 147.1 |
| Seed ortholog evalue | 2e-32 |
| Seed eggNOG ortholog | 2880.D7FIW7 |
| KEGG ko | ko:K03125 |
| KEGG Pathway | ko03022,map03022 |
| EggNOG free text desc. | negative regulation of protein autoubiquitination |
| EggNOG OGs | COG5179@1,KOG0008@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01001,ko03021,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1464 |
| Cds size | 1398 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1225.1741.1 >prot_E-fasciculatus_F_contig1225.1741.1 ID=prot_E-fasciculatus_F_contig1225.1741.1|Name=mRNA_E-fasciculatus_F_contig1225.1741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=466bp
MSTLMEGESSQRPIALDDGGAEASATKSDEAGGAGASARPSSAAQEAGSA ARRQGREGRVEGLLVFGRSQRPNGLEGELYFPDVVPKVDPVDFHDSGEEE SGNYDLIEDLVTEETYKVAKDQALEFYASGNGPRLERARARAARAAKNRN ARRRRRRPAGGNSGNGSGGTPSGLAPQHGSSNDEGNRGRSARSGGRGGFS FVRSSGNGGGDGSGSSSSDGSTSSGYSSYGGRSTSGSDSSDGENGGKKNK KGDPADGLEGVEGRGGREEALEEDEERYWSETPSGVFASSSSSSSSSTSS DSEARARPEARPIAADATSTAVNVGDGIAGNGAAPPRLSAASGCDSGSSG GAAPQAGGDVVGAGGAASTSGAVVGAGVQANGGASGASTESVGAGENDMD VDGEEEAGLAAGKGKGPARGPAAARGVAARQSQRESDGKGLAGEADSDDG EESSGSETEGGSSSDG back to topmRNA from alignment at E-fasciculatus_F_contig1225:3340..6167- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1225.1741.1 ID=mRNA_E-fasciculatus_F_contig1225.1741.1|Name=mRNA_E-fasciculatus_F_contig1225.1741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1225:3340..6167- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CACGAAGCACAGCACCACAGCTGACACAGCGCGGGGGGGGGGGGCACTGT
TCAGTGCCACCTACGCATGAGCACGCTGATGGAGGGTGAATCTTCCCAAC
GGCCAATTGCTTTGGATGATGGTGGTGCCGAAGCAAGCGCTACAAAATCA
GATGAAGCGGTGAGGATAGGTTTGCCCGCACCAACTGCAAGACTGCAAGC
CCGCCCTTTCCACAGCAGCACCTGTGTACGAGTCTCTGCCAGGCTGGTAG
ACCTCCGTATCACAGCAGTGAGTGCATATACTCTGCTGCTCATGCTAGAA
GGAACGTTGGTCGGATGAGTTTTCCTGCTCTGTTCCCGCGACCGTGTGTG
ACCGTGGCCGCTGTCGTGGGTACTGCCTGCTGTCGGTAGGCGGCCATTTG
CGGCGAAACGGGCAAGAGCAGTAACTGCTACCGTACGAGTACTCTACGAT
GACAACCTACAGCAGTTACCTAACATCAACTGCCACTAGAGGAAGAACTA
ACAATAGTGTTGGTGTATCCTGGCTGCCTTGCACGTGGTAGTAAATCGTT
TATTATTTACTCTATTATTTTGGCCGCCCTTACTTGGCCTTTGAGCCTTC
CCACTGGCACTACCGTACGTCGACGCTGCTGCACTCACCGCGACACCAAC
CCACGCAGCTGCTGTTGATGTGGTAACACTGACGCCGACATCGATGCCGC
TCTCGCTATACCTGGCGCGTGTTGCTGCTGGCAACCCGTGGTCGCGACAG
GGCGGCGCCGGTGCAAGCGCCCGGCCTTCTTCGGCAGCCCAAGAGGCTGG
AAGCGCCGCACGGCGGCAAGGGCGAGAAGGACGAGTTGAAGGGCTTCTCG
TGTTTGGGAGGTCTCAGCGGCCCAACGGTCTAGAGGGGGAGCTCTACTTC
CCCGACGTGGTTCCTAAGTAAGTCAGACCCCATCCGTACGGGATGCAGGT
GTGTAGCACCGACGGGTGCGGGCGGTGTGGGCCAAGCGGGTAGTTGTTGA
CAGCATCGTTTTTGGTTGCACATCGTACGCCAGGTCTCTGAGCGACACGT
CTACTGGCCTTGTCCTCGTGGCAGAAGAAACGAGCCTGCGGAGTTAGTAA
CAACCTACCTGCAACACGACGGTGCTAGAAAGAGAAAGAAGTAGCTACAA
TAGCCCCCCGAGACTGCCTGAAAAGCTTTTGCGGCCCCTCTCGCCGTCAA
GTCGGGCCGTGCGCGGGGGCTGCGCATGCTTCATACCCTCGATCGCTGTA
CAATATTTCCTCTGTTTGTTGTTGTTGCAAGGGTGGACCCCGTGGACTTT
CACGATTCCGGGGAAGAGGAGAGCGGCAACTACGACCTCATCGAGGACCT
CGTCACCGAAGAAACCTACAAGTGAGATATACTGTTCCTGAAGCTAGGGC
ATGGGAAAGTTTGTCAGGGGTCGGGACCGGGGGGTTGTGCGTGACTTTGG
ACCCTTTTTTTCCGGACGATTTGAGCCCTATGCGTTGCGTTCGGTTTTGA
GCGTGCGCAATGCGGCTAAGGCTCTCCAGAGGGAGGCGCATGCGTGTTGC
CACTCCGGCATTCCTAGCACAACATGCTTTTATTGTAAAATATTGAAGCC
TCAAGCACGCAAATCCCGCCTTTCACCGGCAACGCTCCCTCGTGTCCCTC
GTGTGGTCTACTCTTCCTTCCTTTTCTCCGCCGATCGTTCGAGGCAATCA
TACCGCTGTGCCCCTTCCCGCCCCCCGTTTGTTTGCTTCGGTTCCTTGAC
CTACGCTACATTTACGTGGTATGTCGTTAGGGTGGCGAAAGACCAGGCGT
TGGAGTTCTATGCGTCGGGGAACGGCCCGCGACTCGAGCGGGCTCGGGCG
CGGGCTGCCCGAGCCGCCAAGAACAGAAACGCCCGCCGACGCCGCCGACG
CCCTGCTGGAGGCAACAGTGGCAACGGTAGCGGCGGGACGCCCTCGGGTT
TGGCGCCACAGCATGGCTCTTCGAATGACGAAGGAAACCGTGGTCGTAGT
GCTAGGAGTGGGGGTCGTGGTGGCTTTTCTTTCGTCCGTAGCAGTGGTAA
TGGTGGGGGCGATGGCAGCGGTAGCAGCAGCAGCGACGGCAGCACCAGTA
GCGGGTACAGCAGCTACGGGGGCCGCAGCACCAGCGGCAGCGACAGCAGC
GACGGAGAAAACGGTGGCAAGAAGAACAAGAAGGGCGACCCTGCCGATGG
CCTCGAGGGAGTGGAAGGCAGGGGCGGCAGAGAGGAGGCCCTGGAAGAGG
ACGAGGAGAGGTACTGGTCAGAGACTCCATCGGGGGTGTTTGCATCATCC
TCCTCTTCTTCTTCGTCATCGACGTCTTCTGACTCGGAAGCAAGAGCAAG
ACCAGAGGCGAGGCCCATCGCCGCAGACGCCACTTCCACGGCCGTCAACG
TTGGTGACGGGATTGCGGGCAACGGTGCTGCCCCGCCGCGCCTCAGCGCT
GCGAGCGGGTGTGACAGCGGTAGTAGCGGTGGCGCCGCCCCGCAAGCCGG
GGGAGATGTTGTTGGCGCTGGTGGCGCTGCTAGCACGAGTGGGGCCGTTG
TGGGTGCTGGTGTTCAAGCCAACGGTGGCGCCTCGGGTGCAAGCACTGAG
AGCGTTGGGGCCGGTGAAAACGACATGGACGTGGACGGGGAAGAGGAAGC
GGGTTTGGCGGCCGGCAAAGGCAAGGGGCCCGCGCGTGGCCCGGCAGCTG
CACGTGGCGTTGCAGCACGGCAGTCTCAGAGGGAGTCGGACGGGAAGGGA
CTAGCAGGAGAGGCGGACAGTGATGACGGAGAGGAAAGCTCAGGCAGTGA
GACGGAAGGGGGCAGTAGCAGTGACGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1225:3340..6167- >mRNA_E-fasciculatus_F_contig1225.1741.1 ID=mRNA_E-fasciculatus_F_contig1225.1741.1|Name=mRNA_E-fasciculatus_F_contig1225.1741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2796bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1225:3340..6167- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAGCACGCTGATGGAGGGTGAATCTTCCCAACGGCCAATTGCTTTGGA TGATGGTGGTGCCGAAGCAAGCGCTACAAAATCAGATGAAGCGATGAGCA CGCTGATGGAGGGTGAATCTTCCCAACGGCCAATTGCTTTGGATGATGGT GGTGCCGAAGCAAGCGCTACAAAATCAGATGAAGCGGGCGGCGCCGGTGC AAGCGCCCGGCCTTCTTCGGCAGCCCAAGAGGCTGGAAGCGCCGCACGGC GGCAAGGGCGAGAAGGACGAGTTGAAGGGCTTCTCGTGTTTGGGAGGTCT CAGCGGCCCAACGGTCTAGAGGGGGAGCTCTACTTCCCCGACGTGGTTCC TAAGGCGGCGCCGGTGCAAGCGCCCGGCCTTCTTCGGCAGCCCAAGAGGC TGGAAGCGCCGCACGGCGGCAAGGGCGAGAAGGACGAGTTGAAGGGCTTC TCGTGTTTGGGAGGTCTCAGCGGCCCAACGGTCTAGAGGGGGAGCTCTAC TTCCCCGACGTGGTTCCTAAGGTGGACCCCGTGGACTTTCACGATTCCGG GGAAGAGGAGAGCGGCAACTACGACCTCATCGAGGACCTCGTCACCGAAG AAACCTACAAGGTGGACCCCGTGGACTTTCACGATTCCGGGGAAGAGGAG AGCGGCAACTACGACCTCATCGAGGACCTCGTCACCGAAGAAACCTACAA GGTGGCGAAAGACCAGGCGTTGGAGTTCTATGCGTCGGGGAACGGCCCGC GACTCGAGCGGGCTCGGGCGCGGGCTGCCCGAGCCGCCAAGAACAGAAAC GCCCGCCGACGCCGCCGACGCCCTGCTGGAGGCAACAGTGGCAACGGTAG CGGCGGGACGCCCTCGGGTTTGGCGCCACAGCATGGCTCTTCGAATGACG AAGGAAACCGTGGTCGTAGTGCTAGGAGTGGGGGTCGTGGTGGCTTTTCT TTCGTCCGTAGCAGTGGTAATGGTGGGGGCGATGGCAGCGGTAGCAGCAG CAGCGACGGCAGCACCAGTAGCGGGTACAGCAGCTACGGGGGCCGCAGCA CCAGCGGCAGCGACAGCAGCGACGGAGAAAACGGTGGCAAGAAGAACAAG AAGGGCGACCCTGCCGATGGCCTCGAGGGAGTGGAAGGCAGGGGCGGCAG AGAGGAGGCCCTGGAAGAGGACGAGGAGAGGTACTGGTCAGAGACTCCAT CGGGGGTGTTTGCATCATCCTCCTCTTCTTCTTCGTCATCGACGTCTTCT GACTCGGAAGCAAGAGCAAGACCAGAGGCGAGGCCCATCGCCGCAGACGC CACTTCCACGGCCGTCAACGTTGGTGACGGGATTGCGGGCAACGGTGCTG CCCCGCCGCGCCTCAGCGCTGCGAGCGGGTGTGACAGCGGTAGTAGCGGT GGCGCCGCCCCGCAAGCCGGGGGAGATGTTGTTGGCGCTGGTGGCGCTGC TAGCACGAGTGGGGCCGTTGTGGGTGCTGGTGTTCAAGCCAACGGTGGCG CCTCGGGTGCAAGCACTGAGAGCGTTGGGGCCGGTGAAAACGACATGGAC GTGGACGGGGAAGAGGAAGCGGGTTTGGCGGCCGGCAAAGGCAAGGGGCC CGCGCGTGGCCCGGCAGCTGCACGTGGCGTTGCAGCACGGCAGTCTCAGA GGGAGTCGGACGGGAAGGGACTAGCAGGAGAGGCGGACAGTGATGACGGA GAGGAAAGCTCAGGCAGTGAGACGGAAGGGGGCAGTAGCAGTGACGGCGG TGGCGAAAGACCAGGCGTTGGAGTTCTATGCGTCGGGGAACGGCCCGCGA CTCGAGCGGGCTCGGGCGCGGGCTGCCCGAGCCGCCAAGAACAGAAACGC CCGCCGACGCCGCCGACGCCCTGCTGGAGGCAACAGTGGCAACGGTAGCG GCGGGACGCCCTCGGGTTTGGCGCCACAGCATGGCTCTTCGAATGACGAA GGAAACCGTGGTCGTAGTGCTAGGAGTGGGGGTCGTGGTGGCTTTTCTTT CGTCCGTAGCAGTGGTAATGGTGGGGGCGATGGCAGCGGTAGCAGCAGCA GCGACGGCAGCACCAGTAGCGGGTACAGCAGCTACGGGGGCCGCAGCACC AGCGGCAGCGACAGCAGCGACGGAGAAAACGGTGGCAAGAAGAACAAGAA GGGCGACCCTGCCGATGGCCTCGAGGGAGTGGAAGGCAGGGGCGGCAGAG AGGAGGCCCTGGAAGAGGACGAGGAGAGGTACTGGTCAGAGACTCCATCG GGGGTGTTTGCATCATCCTCCTCTTCTTCTTCGTCATCGACGTCTTCTGA CTCGGAAGCAAGAGCAAGACCAGAGGCGAGGCCCATCGCCGCAGACGCCA CTTCCACGGCCGTCAACGTTGGTGACGGGATTGCGGGCAACGGTGCTGCC CCGCCGCGCCTCAGCGCTGCGAGCGGGTGTGACAGCGGTAGTAGCGGTGG CGCCGCCCCGCAAGCCGGGGGAGATGTTGTTGGCGCTGGTGGCGCTGCTA GCACGAGTGGGGCCGTTGTGGGTGCTGGTGTTCAAGCCAACGGTGGCGCC TCGGGTGCAAGCACTGAGAGCGTTGGGGCCGGTGAAAACGACATGGACGT GGACGGGGAAGAGGAAGCGGGTTTGGCGGCCGGCAAAGGCAAGGGGCCCG CGCGTGGCCCGGCAGCTGCACGTGGCGTTGCAGCACGGCAGTCTCAGAGG GAGTCGGACGGGAAGGGACTAGCAGGAGAGGCGGACAGTGATGACGGAGA GGAAAGCTCAGGCAGTGAGACGGAAGGGGGCAGTAGCAGTGACGGC back to top
|