mRNA_E-fasciculatus_F_contig12219.1722.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12219.1722.1
Unique NamemRNA_E-fasciculatus_F_contig12219.1722.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12219.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12219contigE-fasciculatus_F_contig12219:1340..3144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12219.1722.1prot_E-fasciculatus_F_contig12219.1722.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12219 1340..3144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.476769-CDS-E-fasciculatus_F_contig12219:1339..15791622927730.476769-CDS-E-fasciculatus_F_contig12219:1339..1579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 1340..1579 -
1695995669.6905785-CDS-E-fasciculatus_F_contig12219:1339..15791695995669.6905785-CDS-E-fasciculatus_F_contig12219:1339..1579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 1340..1579 -
1622927730.489799-CDS-E-fasciculatus_F_contig12219:2078..21501622927730.489799-CDS-E-fasciculatus_F_contig12219:2078..2150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 2079..2150 -
1695995669.6990354-CDS-E-fasciculatus_F_contig12219:2078..21501695995669.6990354-CDS-E-fasciculatus_F_contig12219:2078..2150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 2079..2150 -
1622927730.504506-CDS-E-fasciculatus_F_contig12219:2681..27471622927730.504506-CDS-E-fasciculatus_F_contig12219:2681..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 2682..2747 -
1695995669.7107115-CDS-E-fasciculatus_F_contig12219:2681..27471695995669.7107115-CDS-E-fasciculatus_F_contig12219:2681..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 2682..2747 -
1622927730.532989-CDS-E-fasciculatus_F_contig12219:3090..31441622927730.532989-CDS-E-fasciculatus_F_contig12219:3090..3144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 3091..3144 -
1695995669.7273467-CDS-E-fasciculatus_F_contig12219:3090..31441695995669.7273467-CDS-E-fasciculatus_F_contig12219:3090..3144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12219 3091..3144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12219.1722.1

>prot_E-fasciculatus_F_contig12219.1722.1 ID=prot_E-fasciculatus_F_contig12219.1722.1|Name=mRNA_E-fasciculatus_F_contig12219.1722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=144bp
MPRQPEVWSTSRQFTRAEETLQRQREAFIRDMKRKVVGWQHERNQKMLTE
MQAAAAMEREVATRAHAAVRLQAAMRGHAGRQLAREKRRRLTSLAVSVQT
VYRGRVARREAAARRARWAAIAAGGKAAALIQRQVRTRRRRRVE
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mRNA from alignment at E-fasciculatus_F_contig12219:1340..3144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12219.1722.1 ID=mRNA_E-fasciculatus_F_contig12219.1722.1|Name=mRNA_E-fasciculatus_F_contig12219.1722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1805bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12219:1340..3144- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTCGGCAGCCCGAGGTTTGGAGCACGAGCAGGCAGTTCACTCGGGC
GGAGGTATGCCTACCTAGTCGCAGTCAGCGGTAGACCCCTACCATCGCAA
TATGCACCGACAGTCACTCTAGTAGTGTAGTCGTAATATAGCTGAACATA
CATGAATAATATATGGGTTGGGTGTGTTTGGTGTTGTTGTTGGGTGTTCA
TTTTTGGGGACGCAACATCCAAATGTTTGGACTATATATGCCCATCCTTG
AGCTCGATGACAAGTCTCAGACGCAATCGAACGTCAATGGTAGAAACGCG
GCCTGTGTGTTCCGCGGCTTGTTTGTTGAGTACAAGGTGGCAAACAACGC
CGTGTCTCTTGCTCTTTGTGCTCGCGCGTGCGTTTGTCGCCTTTCAGGAG
ACGCTCCAACGTCAGCGGGAGGCGTTCATCCGTGACATGAAGAGGAAGGT
GGTGGGGTGGCAGGTAAGGCGGCATTGCTTGGACACGGTGGGCGGACAGG
AGTGACAAGGGGGCGGGGGTGTTGTTGATGTTGTTGTTGTTGTCGTTCTT
GGAGTGAGGTGGGCTGTCGAGTCGTGGGTCCTGTTTGTCTCTAGGGCTGC
TGACGGGTTGATTTGCACACGATTGATGACCGATCGATAACCAAAGGCGG
CGGCCAAGTTCACCCGGGAGCTGGTCTCGAATGTTAACGTTTGCGGCTAT
GATAGCGGCAGGCGCACGCTTTTCTGGTCCAACTATGCCACCTCACAACA
GCACTGTGACACCCACCGTAGACAGCTTGGTTGACTGCTAGAACATTCGG
TGGAGTCTCTATCGCGATATTGCTTGGTACGTGTGTGAACACGCCCATTT
CCCATTTAGAGTGTGCTTCCCACGGCACCTCCCCAGCTGTACCCTCACGT
CCCACAACCATAACGGCGACTTCACCTGCGCCCTTCCACACGAACGCCGT
GCCTGTCGTTCTTTGTACTGACACGTGCGTTTGCCGCCTTTCAGCACGAA
CGCAACCAAAAAATGTTGACGGAGATGCAAGCGGCTGCAGCGATGGAGCG
GGAGGTGGCGACAAGAGTAAGAATTTGGCGGGGGTGTTGTTGTTGTTGTT
GTTGTTTTTGGAGGGCGGCGTGGGTGGACCCGACGGGTTTTCGAGCGGTG
GGCACTGGTGTCTCTAAGGCTCACGGGTTGGTTGTGCACGATTGAGTACC
GATCGATTTCCAACTGCGGCGGCAAGTGCACCCGGGGCGGGTCTCGAATG
TTATGTTTGAGGCTGTAAAGCAGCAGGTGCGCTTCTCTTCTCGAACTAGG
CCACCTCAGAACAGCGCTGTGACTGCTCGGTTGGGTTTTTTATCGTGACA
TTGCCGGCGCGTGTGCTGACATTGTCGGCGCGTGTGCGACCATGCCCATT
GAGAGTGTGCTGCCCAGGGCATCACCCCAGTTGTACCGCCCGGTCCCACG
ACAAACAACTGCGACTTCACCTGCACACTACCGCCGCTCTACACAAGACG
ATGTACACTGCTGTACTTCTCGCCGATCCCCTTCCTTTTTGCTCGACTTG
CCGTGTTTTGAATAGGCTCACGCGGCGGTACGCCTGCAGGCGGCGATGAG
GGGCCATGCAGGAAGGCAGTTGGCGCGCGAAAAACGCCGCCGACTGACGT
CGCTTGCTGTCTCCGTGCAGACCGTGTACCGGGGGCGGGTTGCCCGCCGA
GAGGCGGCTGCACGGCGGGCGAGGTGGGCGGCGATTGCGGCGGGGGGGAA
AGCGGCCGCGTTAATCCAGCGGCAAGTCCGGACAAGACGGCGGAGGAGAG
TGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12219:1340..3144-

>mRNA_E-fasciculatus_F_contig12219.1722.1 ID=mRNA_E-fasciculatus_F_contig12219.1722.1|Name=mRNA_E-fasciculatus_F_contig12219.1722.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12219:1340..3144- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTCGGCAGCCCGAGGTTTGGAGCACGAGCAGGCAGTTCACTCGGGC
GGAGATGCCTCGGCAGCCCGAGGTTTGGAGCACGAGCAGGCAGTTCACTC
GGGCGGAGGAGACGCTCCAACGTCAGCGGGAGGCGTTCATCCGTGACATG
AAGAGGAAGGTGGTGGGGTGGCAGGAGACGCTCCAACGTCAGCGGGAGGC
GTTCATCCGTGACATGAAGAGGAAGGTGGTGGGGTGGCAGCACGAACGCA
ACCAAAAAATGTTGACGGAGATGCAAGCGGCTGCAGCGATGGAGCGGGAG
GTGGCGACAAGACACGAACGCAACCAAAAAATGTTGACGGAGATGCAAGC
GGCTGCAGCGATGGAGCGGGAGGTGGCGACAAGAGCTCACGCGGCGGTAC
GCCTGCAGGCGGCGATGAGGGGCCATGCAGGAAGGCAGTTGGCGCGCGAA
AAACGCCGCCGACTGACGTCGCTTGCTGTCTCCGTGCAGACCGTGTACCG
GGGGCGGGTTGCCCGCCGAGAGGCGGCTGCACGGCGGGCGAGGTGGGCGG
CGATTGCGGCGGGGGGGAAAGCGGCCGCGTTAATCCAGCGGCAAGTCCGG
ACAAGACGGCGGAGGAGAGTGGAGGCTCACGCGGCGGTACGCCTGCAGGC
GGCGATGAGGGGCCATGCAGGAAGGCAGTTGGCGCGCGAAAAACGCCGCC
GACTGACGTCGCTTGCTGTCTCCGTGCAGACCGTGTACCGGGGGCGGGTT
GCCCGCCGAGAGGCGGCTGCACGGCGGGCGAGGTGGGCGGCGATTGCGGC
GGGGGGGAAAGCGGCCGCGTTAATCCAGCGGCAAGTCCGGACAAGACGGC
GGAGGAGAGTGGAG
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