mRNA_E-fasciculatus_F_contig12202.1714.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12202.1714.1
Unique NamemRNA_E-fasciculatus_F_contig12202.1714.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12202.1714.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 1.220e-146
Identity = 211/233 (90.56%), Postives = 218/233 (93.56%), Query Frame = 1 
Query:    1 SSRLGEVRSSGGIFDPYVYRGTGGQGLAPMMSSEGVKERLGIMRSHLKSGVCAGIIQKHVPDFHASKFPPVANQIFKDFFEAHRKGDARALAGLTTEELYASLKGEIKSSKSRGANRAAFRLVDFKEPTRVLQMRVDRKKHISPKEGWGQASFWAAVTCRLCSERQLLVVDAKGNEVKAKADEDPTTAQNVTIGVFEAFFGDSAGRWRLALVKELAESPAGATRATGETKKSP 699
            SSRLGEVRSSGGIFDPYVYRG GG+GL PMMSSEGV+ERLGIMRSHLKSGVCAGIIQKHVPDFH SKFPPVANQIFKDFFEAHRKGD RALAGLTTEELYASLKGEIKSSKSRGA RAAFRLVDFKEPT VLQMRVDRKKHISPKEGWGQ      VTCRLCSERQLLVVDAKGNEV+AKADED TTAQNVT+GVFEAFFGDSAGRWRLALV+E AE+PAGAT ATG+TKKSP
Sbjct:   15 SSRLGEVRSSGGIFDPYVYRGAGGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQ------VTCRLCSERQLLVVDAKGNEVEAKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEFAEAPAGATSATGKTKKSP 241
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BLAST of mRNA_E-fasciculatus_F_contig12202.1714.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.570e-37
Identity = 78/206 (37.86%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   85 PMMSSEGVKERLGIMRSHLKSGVCAGIIQKHVPDFHASKFPPVANQIFKDFFEAHRKGDARALAGLTTEELYASLKGEI----KSSKSRGANRAAFRLVDFKEPTRVLQMRVDRKKHISPKEGWGQASFWAAVTCRLCSERQLLVVDAKGNEVKAKADEDPTTAQNVTIGVFEAFFGDSAGRWRLALVKEL-AESPAGATRATGET 687
            P+ +  G+K R  + + H+KS     II+KHVP F    FPP+A+Q+F+ F +AHRKGD  +L  L TE L+ ++K ++    +   S    RAAF+L+   EPT VLQ+R   +K    K GWGQ      +T +  + R++L VD +G EV+     +    +++T+GV E FF D A  WRLA++ E+ A  PA A     +T
Sbjct:    6 PVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQ------MTVQYVTSREILAVDRRGREVQPPPGGNKVV-ESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
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BLAST of mRNA_E-fasciculatus_F_contig12202.1714.1 vs. uniprot
Match: A0A6H5K0Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.160e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 SSRLGEVRSSGGIFDPYVYRGTGGQGLAPMMSSEGVKERLGIMRSHLKSGVCAGIIQKH 177
            SSRLGEVRSSGG+FDPYVYRG GG+GL PMMSSEGVKERLGIMR HLKSGVCAGIIQ H
Sbjct:   21 SSRLGEVRSSGGVFDPYVYRGAGGKGLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQVH 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12202.1714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKT9_ECTSI1.220e-14690.56Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YW25_9STRA1.570e-3737.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K0Z7_9PHAE1.160e-2789.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12202contigE-fasciculatus_F_contig12202:572..3308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score417.5
Seed ortholog evalue4e-114
Seed eggNOG ortholog2880.D7FKT9
Preferred nameKRE29
KEGG koko:K09657,ko:K17426
KEGG ReactionR07610,R07611
KEGG Pathwayko00513,ko01100,map00513,map01100
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4599@1,KOG4599@2759
EC2.4.1.244
COG Functional cat.L
CAZyGT7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko01000,ko01003,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTim44-like domain
Ec32 orthologEc-17_001350.1
Exons5
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12202.1714.1prot_E-fasciculatus_F_contig12202.1714.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12202 572..3308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.7666733-CDS-E-fasciculatus_F_contig12202:571..7421622927729.7666733-CDS-E-fasciculatus_F_contig12202:571..742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 572..742 +
1695995669.3822057-CDS-E-fasciculatus_F_contig12202:571..7421695995669.3822057-CDS-E-fasciculatus_F_contig12202:571..742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 572..742 +
1622927729.7872138-CDS-E-fasciculatus_F_contig12202:1407..15481622927729.7872138-CDS-E-fasciculatus_F_contig12202:1407..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 1408..1548 +
1695995669.3929155-CDS-E-fasciculatus_F_contig12202:1407..15481695995669.3929155-CDS-E-fasciculatus_F_contig12202:1407..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 1408..1548 +
1622927729.80464-CDS-E-fasciculatus_F_contig12202:1865..20211622927729.80464-CDS-E-fasciculatus_F_contig12202:1865..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 1866..2021 +
1695995669.4010339-CDS-E-fasciculatus_F_contig12202:1865..20211695995669.4010339-CDS-E-fasciculatus_F_contig12202:1865..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 1866..2021 +
1622927729.8198092-CDS-E-fasciculatus_F_contig12202:2554..26661622927729.8198092-CDS-E-fasciculatus_F_contig12202:2554..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 2555..2666 +
1695995669.4090087-CDS-E-fasciculatus_F_contig12202:2554..26661695995669.4090087-CDS-E-fasciculatus_F_contig12202:2554..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 2555..2666 +
1622927729.8357348-CDS-E-fasciculatus_F_contig12202:3186..33081622927729.8357348-CDS-E-fasciculatus_F_contig12202:3186..3308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 3187..3308 +
1695995669.4167514-CDS-E-fasciculatus_F_contig12202:3186..33081695995669.4167514-CDS-E-fasciculatus_F_contig12202:3186..3308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12202 3187..3308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12202.1714.1

>prot_E-fasciculatus_F_contig12202.1714.1 ID=prot_E-fasciculatus_F_contig12202.1714.1|Name=mRNA_E-fasciculatus_F_contig12202.1714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
SSRLGEVRSSGGIFDPYVYRGTGGQGLAPMMSSEGVKERLGIMRSHLKSG
VCAGIIQKHVPDFHASKFPPVANQIFKDFFEAHRKGDARALAGLTTEELY
ASLKGEIKSSKSRGANRAAFRLVDFKEPTRVLQMRVDRKKHISPKEGWGQ
ASFWAAVTCRLCSERQLLVVDAKGNEVKAKADEDPTTAQNVTIGVFEAFF
GDSAGRWRLALVKELAESPAGATRATGETKKSP*
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mRNA from alignment at E-fasciculatus_F_contig12202:572..3308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12202.1714.1 ID=mRNA_E-fasciculatus_F_contig12202.1714.1|Name=mRNA_E-fasciculatus_F_contig12202.1714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2737bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12202:572..3308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTCGCGGCTGGGAGAGGTGCGCAGCTCCGGCGGCATCTTTGACCCTTA
CGTGTACCGAGGGACCGGGGGTCAAGGCCTCGCACCGATGATGAGCAGCG
AAGGCGTGAAGGAAAGGCTCGGCATCATGCGGAGCCATCTCAAGTCGGGA
GTGTGTGCGGGAATCATCCAGGTGCGTTACGGCTTTGCCGACCGCTCTCC
CATGTCGTTGTTGTGAAGTCGCGGGAAGCTGTGGGCCGGTAGCAACTTAA
CACCGCTGCTTTCACTGCGACGTGTGTTTGGACGTCGGGGCAGAACAGTT
TGAAGAGTTGCCACATGAATCGCTCTGCTCTGCTCTGTCGCACCGCCACC
TGGCGCGCATCCGCTCCGCTCCGTCAGGTTTCATTCGATTCTGACAAACA
CAGCAGTGCACCAAGGCCGTCCTAGGGCGCATGGGTTACTCTACGATATG
TTTTAATTGCGTTTTCTCCAACGTTGCTCCGTCACCAAAGCCGCGTTTTG
CACGTTCTGCGCGAAATTCGCCTTAGGATGTTCTGCTGGGCGACAGCTCC
CAGTAACACATATCTCGGTCCACGGAGCGGTTTCACTTCTTCCATGAAGA
ATCCCAAACAACAGAAGAAAGAAAATTGGAAATTCCTCCTGCTACACAGA
CCCAAGCAGAGGTGCACAGGATGAGGACCACCGAAGAACGGCCAGCGTTG
GTACGAAAGCAGTAATGCCCTCCGTTACGCATTGAACACTTGTACCGGTG
CATATTTCTCTTCCCCTTACAGCGGCACCCGCCCCCCCCCCTCATCCCGC
CTCTCTCCCCCCAAACGACCGGAATGACCGCTTCAGAAGCACGTGCCGGA
CTTCCACGCGTCCAAGTTCCCTCCCGTGGCCAACCAGATCTTCAAGGATT
TCTTCGAGGCGCATCGAAAAGGAGACGCGCGGGCGCTTGCGGGCCTGACC
ACGGAGGAGCTGTACGCTAGCTTGAAGGTGGCCAAAGTGGATTAGTTCCC
CTCGATTTGTGCTTGCTCACCTATGCATGTGATGCTTGGAGGCGACGTTG
TTTACGCTGGTGTGTTGCTTTGTCGCACCATGGACCGTGTGGTGAACAAT
GTAATAGACTTGGTAGCCTAGAGAATCAGTCGAGAACTTTGCTCTTGAAG
CACGTATGTGAAGGCGTTCGCGGCCTCGAAGCCTCGCTCGACACACATCG
AAGACCAGAAAAATGTCCACGCACAGCAGCGCCAAACGAACCTCTTCGTC
GGTTCTCGTCACATGCTTAACTTTTTTTTTTGTGTGTGTATCAGGGTGAG
ATAAAATCTTCCAAGAGTAGGGGAGCAAATCGAGCCGCGTTTCGATTGGT
GGACTTCAAGGAGCCTACCCGTGTGCTTCAGATGCGGGTGGACCGCAAAA
AGCACATCTCTCCGAAAGAGGGCTGGGGGCAGGCAAGCTTCTGGGCGGCA
GTACCGCCGTGTTTTTTTTGTCTTGGAGCCGAGCCGTGTGGGTGTTTGTC
GTTGACACGCGGGGATTGGTCTTGTTGTACCTCTGGGGGATGGGCCGCGA
CTGTGGTGTCTTCCACAGTGGTTTTGCTGCCGATATCCGTTGCCAGGGCG
GCGAAGCTGTGCGATCGAAGACGGTCACAGAGTCCCGTCGTTGGTGTTTT
CGTGCAAAAGTACAGCCGTACCGCGCCCACCTTCTGTTGAGACGCTTGCT
GAGGGAGATATGTTTTATACTTTGGTATGCGGTTTTTCGAGTAGAACAAG
CTTGATAGCATACGCGGTTGGAAAGGCCGCTACCAGGCGTTTTCAATCGC
TCTTCACAAAACAATGGCAGCCACAACGCAAGACCTACACCTCGCCGTGG
GAGCGGCATCGCCTTCTTATTGAAAGGAATTTGTGCGATTTTGCCGCATC
TGGTGGCCTCGCTCCAACCAGACCCCTGGTTCTGACCCTTATCCCCCTGA
CCGAATCGAATCGAACCGAATGGAATCGGCTAGGTGACCTGCAGGTTGTG
CAGCGAGCGACAGCTGCTGGTCGTGGACGCCAAGGGGAACGAGGTTAAGG
CTAAAGCGGACGAGGACCCGACGACGGCCCAAAACGTCACCATCGGTACG
AACGTCGTCACGGGACTGTCACGGAAGTCCCACTTCTGATCTCTGGTCTC
CCCATGATTCCGACTGATTGATGATTGGCGGCCTTCTCGTGGCGCAGCCC
GTGTATGTATGGGTGTTGGTGGGAAATTCACGAGCTATACTATGGGCATG
CTTGTCAGGCGAAAGTTCCTCCGCTTGCATCCTTCAAGGCTGGTCTTTGA
CTTTGCCAAGGCCTCTGCACGATTCATTCCCCCCAAGTACGTCACAGTAA
CGCGTCGAGTGGCGAGCGATGGCCAGACGGCTGCCATTTTGCAGTCCGGG
CAAGCGCCGGAGGGAAGGCCTCGTCAGGCTCGATAATGATCTACTCGATC
ATCTTCTGGTGATGATCTTCGTCGATCAACGTTCCTCGGCTCTTTGTCGA
AGACCACTGCTGTCGACGTTCGTCGGTGCATGGCCACTAGCTACCACCCC
CTTCCCACATGCGACCAATGAACTAACTCCCGCTTGGCCACCCTGTCCTG
TCCTCCTGTCCTAAGGTGTATTTGAGGCGTTTTTCGGGGACTCCGCGGGA
AGGTGGAGGCTAGCGCTCGTAAAAGAGTTAGCGGAGTCACCCGCAGGCGC
AACTCGTGCCACCGGGGAGACGAAAAAGTCTCCGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12202:572..3308+

>mRNA_E-fasciculatus_F_contig12202.1714.1 ID=mRNA_E-fasciculatus_F_contig12202.1714.1|Name=mRNA_E-fasciculatus_F_contig12202.1714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12202:572..3308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTCGCGGCTGGGAGAGGTGCGCAGCTCCGGCGGCATCTTTGACCCTTA
CGTGTACCGAGGGACCGGGGGTCAAGGCCTCGCACCGATGATGAGCAGCG
AAGGCGTGAAGGAAAGGCTCGGCATCATGCGGAGCCATCTCAAGTCGGGA
GTGTGTGCGGGAATCATCCAGAGCTCGCGGCTGGGAGAGGTGCGCAGCTC
CGGCGGCATCTTTGACCCTTACGTGTACCGAGGGACCGGGGGTCAAGGCC
TCGCACCGATGATGAGCAGCGAAGGCGTGAAGGAAAGGCTCGGCATCATG
CGGAGCCATCTCAAGTCGGGAGTGTGTGCGGGAATCATCCAGAAGCACGT
GCCGGACTTCCACGCGTCCAAGTTCCCTCCCGTGGCCAACCAGATCTTCA
AGGATTTCTTCGAGGCGCATCGAAAAGGAGACGCGCGGGCGCTTGCGGGC
CTGACCACGGAGGAGCTGTACGCTAGCTTGAAGAAGCACGTGCCGGACTT
CCACGCGTCCAAGTTCCCTCCCGTGGCCAACCAGATCTTCAAGGATTTCT
TCGAGGCGCATCGAAAAGGAGACGCGCGGGCGCTTGCGGGCCTGACCACG
GAGGAGCTGTACGCTAGCTTGAAGGGTGAGATAAAATCTTCCAAGAGTAG
GGGAGCAAATCGAGCCGCGTTTCGATTGGTGGACTTCAAGGAGCCTACCC
GTGTGCTTCAGATGCGGGTGGACCGCAAAAAGCACATCTCTCCGAAAGAG
GGCTGGGGGCAGGCAAGCTTCTGGGCGGCAGGTGAGATAAAATCTTCCAA
GAGTAGGGGAGCAAATCGAGCCGCGTTTCGATTGGTGGACTTCAAGGAGC
CTACCCGTGTGCTTCAGATGCGGGTGGACCGCAAAAAGCACATCTCTCCG
AAAGAGGGCTGGGGGCAGGCAAGCTTCTGGGCGGCAGTGACCTGCAGGTT
GTGCAGCGAGCGACAGCTGCTGGTCGTGGACGCCAAGGGGAACGAGGTTA
AGGCTAAAGCGGACGAGGACCCGACGACGGCCCAAAACGTCACCATCGGT
GACCTGCAGGTTGTGCAGCGAGCGACAGCTGCTGGTCGTGGACGCCAAGG
GGAACGAGGTTAAGGCTAAAGCGGACGAGGACCCGACGACGGCCCAAAAC
GTCACCATCGGTGTATTTGAGGCGTTTTTCGGGGACTCCGCGGGAAGGTG
GAGGCTAGCGCTCGTAAAAGAGTTAGCGGAGTCACCCGCAGGCGCAACTC
GTGCCACCGGGGAGACGAAAAAGTCTCCGTAAGTGTATTTGAGGCGTTTT
TCGGGGACTCCGCGGGAAGGTGGAGGCTAGCGCTCGTAAAAGAGTTAGCG
GAGTCACCCGCAGGCGCAACTCGTGCCACCGGGGAGACGAAAAAGTCTCC
GTAA
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