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Homology
BLAST of mRNA_E-fasciculatus_F_contig1220.1711.1 vs. uniprot
Match: D8LM26_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM26_ECTSI) HSP 1 Score: 942 bits (2435), Expect = 0.000e+0 Identity = 575/682 (84.31%), Postives = 580/682 (85.04%), Query Frame = 1
Query: 67 MGSIPYCDHHGWNWEPGQGPSPCMGETASFLLASSVLLYTIPLTKDTLHPFQRAAAAGSTAARVHAVQITLAIVQASIALVCGVLFARPRGMLSGANLLYSMSWTAASCTMAVALQRHPDCSKTLIWFWCGALVVNSVVLSSLRHASEVSGHRLPAEIGCLSWMSFFANAVLVVLQLFKPELDDTEGVYVRVVGREGVVPSASSGNNGWQAFWAGGGDTFDVAATAVSGDGRNTKSGSSSSRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNESLLGTIGLDDQARDFSSPSKPKAGWNNXXXXXXQGRGQAGGCFRRVGGFFSSVVDRGNXXXXXXXXXXXXXXXXXXGAGWLQRQDSPFRRKLWGDGGSXXXXXXXXXXXXXXXXXXXXXXXXXPPSYSGAASIGVRAPPQVAAPIFGVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSRTTSXXXXXXXXXXXXXXXXXXXXXXAGLLPYGRASSMVESRFNDHLDPSLALDPNDGARVGEPLRVQFELVVRASGRGEMDWWGRGDAAEPGSPGAGHIGIHPPHGPAPATPG--AGDWRVWRSAADTLALYDALALRFGQEFCGRVSRPKFKTTLPCSAAVGASGFLGDDRSGSPPTPSSPDSPPALIVAPAAPHRVDILRDAKTVGAFLRSLLGLRQFL 2106
MGSIPYCDHHGWNWE GQGPSPCMGETASFLLASSVLLYTIPLTKDTLHPFQRAAAAGSTAARVHAVQITLAIVQASIALVCGVLF RPRGMLSGANLLYSMSWTAASCTMAVALQRHPDCSKTLIWFWCGALVVNSVVLSSLRHASEVSGH LPAEIGCLSWMSFFANAVLVVLQLFKPELDDTEGVYVRVVGREGVVPSASS NNGWQ FWAGGGDTFDVAATAVSGD RNTK XXXXXXXXXXXXXXXXX TLNESLLG IGLDDQ R+FSSPSKP+AGWNNXXXXXX XXXXXXXXXXXXXXXXX GA WLQRQDSPFRRKLWGDGG XXXXXXPPSYSGAASIGVRAPP+VAAPIFGVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSR XXXXXXXXXXXXXXXXXXXXXX RASSMVESRFNDHLDPSLALDPNDGARVGEPL VQFELVVRASGRGEMDWWGRGD+AEP SPGAGHIGIHPPHGPAPATPG AGDWRVWRSAADTLALYDALALRFGQEFCGRVSRPK KTTLP SAA GASG L DDRSGSPP PSSPDSPPALIVA AAPHRVD+LRDAKTVGAFLRSLLGLRQFL
Sbjct: 1 MGSIPYCDHHGWNWESGQGPSPCMGETASFLLASSVLLYTIPLTKDTLHPFQRAAAAGSTAARVHAVQITLAIVQASIALVCGVLFVRPRGMLSGANLLYSMSWTAASCTMAVALQRHPDCSKTLIWFWCGALVVNSVVLSSLRHASEVSGHHLPAEIGCLSWMSFFANAVLVVLQLFKPELDDTEGVYVRVVGREGVVPSASSANNGWQTFWAGGGDTFDVAATAVSGDDRNTK----XXXXXXXXXXXXXXXXXXXXXFEGGGAWPIAGGTNGRGGTLNESLLGIIGLDDQDREFSSPSKPEAGWNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWLQRQDSPFRRKLWGDGG--FASATTVTRASAQSALSAXXXXXXPPSYSGAASIGVRAPPRVAAPIFGVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RASSMVESRFNDHLDPSLALDPNDGARVGEPLGVQFELVVRASGRGEMDWWGRGDSAEPSSPGAGHIGIHPPHGPAPATPGTGAGDWRVWRSAADTLALYDALALRFGQEFCGRVSRPKLKTTLPSSAA-GASGVLSDDRSGSPPRPSSPDSPPALIVASAAPHRVDMLRDAKTVGAFLRSLLGLRQFL 672
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Winged helix-turn-helix DNA-binding domain |
| Ec32 ortholog | Ec-14_002640.1 |
| Exons | 2 |
| Model size | 2107 |
| Cds size | 2106 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1220.1711.1 >prot_E-fasciculatus_F_contig1220.1711.1 ID=prot_E-fasciculatus_F_contig1220.1711.1|Name=mRNA_E-fasciculatus_F_contig1220.1711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=702bp
VQRSREDLSPCALHLRVRRWKCMGSIPYCDHHGWNWEPGQGPSPCMGETA SFLLASSVLLYTIPLTKDTLHPFQRAAAAGSTAARVHAVQITLAIVQASI ALVCGVLFARPRGMLSGANLLYSMSWTAASCTMAVALQRHPDCSKTLIWF WCGALVVNSVVLSSLRHASEVSGHRLPAEIGCLSWMSFFANAVLVVLQLF KPELDDTEGVYVRVVGREGVVPSASSGNNGWQAFWAGGGDTFDVAATAVS GDGRNTKSGSSSSRWCCFGSRRGSGNDDFEGGGAWPTAGGANGGGGGGGG TLNESLLGTIGLDDQARDFSSPSKPKAGWNNGGGGSSQGRGQAGGCFRRV GGFFSSVVDRGNKAASAAAEQEEGRAGGGAGAGWLQRQDSPFRRKLWGDG GSASATTVTRASAQSALGAGSSSSSSSPPSYSGAASIGVRAPPQVAAPIF GVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSRTTSSSSARTATTLSASE ATSTGGGGAGLLPYGRASSMVESRFNDHLDPSLALDPNDGARVGEPLRVQ FELVVRASGRGEMDWWGRGDAAEPGSPGAGHIGIHPPHGPAPATPGAGDW RVWRSAADTLALYDALALRFGQEFCGRVSRPKFKTTLPCSAAVGASGFLG DDRSGSPPTPSSPDSPPALIVAPAAPHRVDILRDAKTVGAFLRSLLGLRQ FL back to topmRNA from alignment at E-fasciculatus_F_contig1220:834..3617- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1220.1711.1 ID=mRNA_E-fasciculatus_F_contig1220.1711.1|Name=mRNA_E-fasciculatus_F_contig1220.1711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2784bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1220:834..3617- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GTGCAGCGCAGCAGGGAGGACCTGTCGCCGTGTGCACTGCACCTTCGCGT
GCGACGTTGGAAGTGTATGGGGTCGATACCATACTGCGATCACCATGGCT
GGAACTGGGAGCCGGGGCAGGGCCCTTCTCCGTGCATGGGAGAGACGGCG
TCGTTTCTCCTGGCGTCCAGCGTACTCCTCTACACGATCCCGCTGACGAA
GGACACGCTGCACCCGTTCCAGAGGGCCGCCGCGGCGGGCAGCACCGCGG
CGCGCGTCCACGCGGTGCAGATAACCCTCGCGATCGTGCAGGCGTCCATA
GCTCTGGTGTGCGGCGTGCTGTTCGCGAGGCCGAGAGGGATGCTGTCCGG
GGCCAACTTGCTGTACAGCATGTCGTGGACGGCTGCCTCGTGCACCATGG
CGGTCGCCCTCCAGCGACACCCGGACTGCTCGAAGACGCTGATCTGGTTC
TGGTGCGGGGCGCTGGTGGTAAACAGGTGCGCGGAGGCGTCAGTGCCGAC
CGCTCGATCGCTTTGAAGATCGTGGGTTGCCTCGCTGTGTGCTCGAACAA
TCAATGTTCGTACCTACGTACGTACACGCGCAATTTTCAAACTTGCGCGC
TGTTGTTGTTGTTGTTGCCGTTTGCGCCCTCTCGCTCGATGTACAGTGTA
AACGCAGCCGGTCTCCGCATAAGCAGAACGGAGGTCCTGTCAGCGTTGGC
AAGCCCCCCACGAAAGAAATTTTAGCTATACTGTCATTTACGCTCGCTGC
TTGATGTACACTTGGACATGATCGACCAGTTATACTCTCAACTGCAACTT
GGTTGCTGTCGTCACACCTCGCCTGAGGCTGTTGGCCAAGACGAAAGAAA
GAGCGTACATGGCGCGCCTCAGGAGTGGGCTCATCAGAGCATAGTAGCAG
TGCCATCAAGGGGTGATGCAAGATGAAAGTAAAGCACCGTGTTGGTGTGA
ATCAGCTGCCAGCTGCCATCAATGACGTTTCCCAAGGTCGAACAACAAAG
CTGACCTGTTTTTGACTCGAAGAGCCCAGCGAACCTCAACGAACCAAAAA
GAAAAATGTACAAATCTGCACATCTACAATCTTTTCTTTCATATATCCCG
TCCCACGCCACATTCTTACAATGATGTTCTCCTTGTCTCCCCCCCCCTCT
CCAGCGTCGTGCTCTCCAGCCTTCGCCACGCATCCGAGGTCTCCGGCCAC
CGCCTGCCGGCGGAGATCGGGTGCCTCAGCTGGATGTCCTTCTTCGCGAA
CGCCGTGCTCGTGGTGCTGCAGCTCTTCAAGCCCGAGCTGGACGACACCG
AAGGCGTGTACGTACGCGTGGTTGGCCGAGAAGGAGTGGTGCCGTCAGCA
TCGTCGGGCAACAACGGGTGGCAGGCGTTCTGGGCCGGCGGCGGTGACAC
CTTCGACGTAGCGGCTACCGCCGTGTCCGGGGACGGCCGCAACACCAAGA
GCGGCAGCAGCAGCAGCAGATGGTGCTGTTTCGGCAGTCGACGAGGGAGC
GGGAACGACGACTTCGAAGGCGGCGGAGCTTGGCCGACTGCCGGCGGGGC
AAACGGCGGCGGCGGCGGCGGCGGTGGCACCCTCAACGAATCTCTGCTCG
GAACTATCGGTTTAGACGATCAAGCAAGGGATTTTTCATCGCCAAGCAAG
CCCAAAGCGGGCTGGAACAACGGTGGTGGTGGGTCTAGCCAAGGGCGAGG
CCAAGCCGGGGGTTGCTTCCGGCGCGTGGGTGGCTTCTTTTCTTCGGTTG
TCGATCGAGGGAACAAAGCGGCGTCAGCGGCAGCGGAGCAGGAAGAGGGG
AGGGCCGGGGGCGGGGCGGGGGCGGGCTGGCTGCAACGACAAGACTCCCC
TTTCCGGCGAAAGCTTTGGGGGGACGGCGGTTCTGCGAGCGCCACGACCG
TTACACGAGCCAGCGCCCAATCGGCACTCGGCGCCGGCTCCTCCTCCTCC
TCCTCCTCCCCGCCCTCCTACTCCGGAGCCGCTTCCATCGGCGTCCGCGC
CCCCCCTCAGGTAGCGGCGCCGATCTTCGGCGTTGCCGTGACTCGCTGGA
GGCTTGTGGACCTGGACGGCGAGCCGTTGGCGCACGGGTCATCCTCGGGG
GACGTTGCCTGGACGGACCGCTCCCGCACTACCTCGTCATCGTCCGCTCG
CACCGCTACTACCCTCAGCGCGTCGGAGGCAACGTCGACGGGTGGCGGAG
GAGCAGGGCTACTGCCCTACGGGCGGGCGTCGTCGATGGTGGAGAGCCGT
TTCAACGACCACCTGGACCCGTCGCTAGCGCTAGACCCGAACGACGGAGC
GAGGGTGGGCGAGCCCCTGAGGGTGCAGTTCGAGCTGGTGGTGCGAGCGA
GCGGCAGAGGGGAGATGGACTGGTGGGGCCGCGGCGACGCCGCCGAGCCC
GGCAGCCCGGGGGCGGGACACATCGGCATCCACCCCCCGCACGGGCCGGC
CCCGGCGACGCCCGGGGCCGGGGACTGGCGTGTCTGGCGCTCCGCCGCGG
ACACGCTCGCACTTTACGACGCTCTCGCCCTCCGGTTTGGGCAGGAGTTC
TGCGGGCGCGTGTCGCGGCCGAAGTTTAAGACAACACTGCCGTGTTCGGC
GGCGGTGGGAGCGAGCGGCTTTCTGGGCGACGATAGGTCGGGGTCGCCAC
CAACGCCCTCTTCCCCGGACTCACCCCCTGCGCTGATCGTGGCGCCCGCC
GCTCCCCACCGCGTGGACATCTTGAGGGACGCCAAGACGGTCGGAGCGTT
CTTGAGGAGCCTCTTGGGGCTGCGGCAGTTTCTC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1220:834..3617- >mRNA_E-fasciculatus_F_contig1220.1711.1 ID=mRNA_E-fasciculatus_F_contig1220.1711.1|Name=mRNA_E-fasciculatus_F_contig1220.1711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1220:834..3617- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GTGCAGCGCAGCAGGGAGGACCTGTCGCCGTGTGCACTGCACCTTCGCGT GCGACGTTGGAAGTGTATGGGGTCGATACCATACTGCGATCACCATGGCT GGAACTGGGAGCCGGGGCAGGGCCCTTCTCCGTGCATGGGAGAGACGGCG TCGTTTCTCCTGGCGTCCAGCGTACTCCTCTACACGATCCCGCTGACGAA GGACACGCTGCACCCGTTCCAGAGGGCCGCCGCGGCGGGCAGCACCGCGG CGCGCGTCCACGCGGTGCAGATAACCCTCGCGATCGTGCAGGCGTCCATA GCTCTGGTGTGCGGCGTGCTGTTCGCGAGGCCGAGAGGGATGCTGTCCGG GGCCAACTTGCTGTACAGCATGTCGTGGACGGCTGCCTCGTGCACCATGG CGGTCGCCCTCCAGCGACACCCGGACTGCTCGAAGACGCTGATCTGGTTC TGGTGCGGGGCGCTGGTGGTAAACAGGTGCAGCGCAGCAGGGAGGACCTG TCGCCGTGTGCACTGCACCTTCGCGTGCGACGTTGGAAGTGTATGGGGTC GATACCATACTGCGATCACCATGGCTGGAACTGGGAGCCGGGGCAGGGCC CTTCTCCGTGCATGGGAGAGACGGCGTCGTTTCTCCTGGCGTCCAGCGTA CTCCTCTACACGATCCCGCTGACGAAGGACACGCTGCACCCGTTCCAGAG GGCCGCCGCGGCGGGCAGCACCGCGGCGCGCGTCCACGCGGTGCAGATAA CCCTCGCGATCGTGCAGGCGTCCATAGCTCTGGTGTGCGGCGTGCTGTTC GCGAGGCCGAGAGGGATGCTGTCCGGGGCCAACTTGCTGTACAGCATGTC GTGGACGGCTGCCTCGTGCACCATGGCGGTCGCCCTCCAGCGACACCCGG ACTGCTCGAAGACGCTGATCTGGTTCTGGTGCGGGGCGCTGGTGGTAAAC AGCGTCGTGCTCTCCAGCCTTCGCCACGCATCCGAGGTCTCCGGCCACCG CCTGCCGGCGGAGATCGGGTGCCTCAGCTGGATGTCCTTCTTCGCGAACG CCGTGCTCGTGGTGCTGCAGCTCTTCAAGCCCGAGCTGGACGACACCGAA GGCGTGTACGTACGCGTGGTTGGCCGAGAAGGAGTGGTGCCGTCAGCATC GTCGGGCAACAACGGGTGGCAGGCGTTCTGGGCCGGCGGCGGTGACACCT TCGACGTAGCGGCTACCGCCGTGTCCGGGGACGGCCGCAACACCAAGAGC GGCAGCAGCAGCAGCAGATGGTGCTGTTTCGGCAGTCGACGAGGGAGCGG GAACGACGACTTCGAAGGCGGCGGAGCTTGGCCGACTGCCGGCGGGGCAA ACGGCGGCGGCGGCGGCGGCGGTGGCACCCTCAACGAATCTCTGCTCGGA ACTATCGGTTTAGACGATCAAGCAAGGGATTTTTCATCGCCAAGCAAGCC CAAAGCGGGCTGGAACAACGGTGGTGGTGGGTCTAGCCAAGGGCGAGGCC AAGCCGGGGGTTGCTTCCGGCGCGTGGGTGGCTTCTTTTCTTCGGTTGTC GATCGAGGGAACAAAGCGGCGTCAGCGGCAGCGGAGCAGGAAGAGGGGAG GGCCGGGGGCGGGGCGGGGGCGGGCTGGCTGCAACGACAAGACTCCCCTT TCCGGCGAAAGCTTTGGGGGGACGGCGGTTCTGCGAGCGCCACGACCGTT ACACGAGCCAGCGCCCAATCGGCACTCGGCGCCGGCTCCTCCTCCTCCTC CTCCTCCCCGCCCTCCTACTCCGGAGCCGCTTCCATCGGCGTCCGCGCCC CCCCTCAGGTAGCGGCGCCGATCTTCGGCGTTGCCGTGACTCGCTGGAGG CTTGTGGACCTGGACGGCGAGCCGTTGGCGCACGGGTCATCCTCGGGGGA CGTTGCCTGGACGGACCGCTCCCGCACTACCTCGTCATCGTCCGCTCGCA CCGCTACTACCCTCAGCGCGTCGGAGGCAACGTCGACGGGTGGCGGAGGA GCAGGGCTACTGCCCTACGGGCGGGCGTCGTCGATGGTGGAGAGCCGTTT CAACGACCACCTGGACCCGTCGCTAGCGCTAGACCCGAACGACGGAGCGA GGGTGGGCGAGCCCCTGAGGGTGCAGTTCGAGCTGGTGGTGCGAGCGAGC GGCAGAGGGGAGATGGACTGGTGGGGCCGCGGCGACGCCGCCGAGCCCGG CAGCCCGGGGGCGGGACACATCGGCATCCACCCCCCGCACGGGCCGGCCC CGGCGACGCCCGGGGCCGGGGACTGGCGTGTCTGGCGCTCCGCCGCGGAC ACGCTCGCACTTTACGACGCTCTCGCCCTCCGGTTTGGGCAGGAGTTCTG CGGGCGCGTGTCGCGGCCGAAGTTTAAGACAACACTGCCGTGTTCGGCGG CGGTGGGAGCGAGCGGCTTTCTGGGCGACGATAGGTCGGGGTCGCCACCA ACGCCCTCTTCCCCGGACTCACCCCCTGCGCTGATCGTGGCGCCCGCCGC TCCCCACCGCGTGGACATCTTGAGGGACGCCAAGACGGTCGGAGCGTTCT TGAGGAGCCTCTTGGGGCTGCGGCAGTTTCTCCGTCGTGCTCTCCAGCCT TCGCCACGCATCCGAGGTCTCCGGCCACCGCCTGCCGGCGGAGATCGGGT GCCTCAGCTGGATGTCCTTCTTCGCGAACGCCGTGCTCGTGGTGCTGCAG CTCTTCAAGCCCGAGCTGGACGACACCGAAGGCGTGTACGTACGCGTGGT TGGCCGAGAAGGAGTGGTGCCGTCAGCATCGTCGGGCAACAACGGGTGGC AGGCGTTCTGGGCCGGCGGCGGTGACACCTTCGACGTAGCGGCTACCGCC GTGTCCGGGGACGGCCGCAACACCAAGAGCGGCAGCAGCAGCAGCAGATG GTGCTGTTTCGGCAGTCGACGAGGGAGCGGGAACGACGACTTCGAAGGCG GCGGAGCTTGGCCGACTGCCGGCGGGGCAAACGGCGGCGGCGGCGGCGGC GGTGGCACCCTCAACGAATCTCTGCTCGGAACTATCGGTTTAGACGATCA AGCAAGGGATTTTTCATCGCCAAGCAAGCCCAAAGCGGGCTGGAACAACG GTGGTGGTGGGTCTAGCCAAGGGCGAGGCCAAGCCGGGGGTTGCTTCCGG CGCGTGGGTGGCTTCTTTTCTTCGGTTGTCGATCGAGGGAACAAAGCGGC GTCAGCGGCAGCGGAGCAGGAAGAGGGGAGGGCCGGGGGCGGGGCGGGGG CGGGCTGGCTGCAACGACAAGACTCCCCTTTCCGGCGAAAGCTTTGGGGG GACGGCGGTTCTGCGAGCGCCACGACCGTTACACGAGCCAGCGCCCAATC GGCACTCGGCGCCGGCTCCTCCTCCTCCTCCTCCTCCCCGCCCTCCTACT CCGGAGCCGCTTCCATCGGCGTCCGCGCCCCCCCTCAGGTAGCGGCGCCG ATCTTCGGCGTTGCCGTGACTCGCTGGAGGCTTGTGGACCTGGACGGCGA GCCGTTGGCGCACGGGTCATCCTCGGGGGACGTTGCCTGGACGGACCGCT CCCGCACTACCTCGTCATCGTCCGCTCGCACCGCTACTACCCTCAGCGCG TCGGAGGCAACGTCGACGGGTGGCGGAGGAGCAGGGCTACTGCCCTACGG GCGGGCGTCGTCGATGGTGGAGAGCCGTTTCAACGACCACCTGGACCCGT CGCTAGCGCTAGACCCGAACGACGGAGCGAGGGTGGGCGAGCCCCTGAGG GTGCAGTTCGAGCTGGTGGTGCGAGCGAGCGGCAGAGGGGAGATGGACTG GTGGGGCCGCGGCGACGCCGCCGAGCCCGGCAGCCCGGGGGCGGGACACA TCGGCATCCACCCCCCGCACGGGCCGGCCCCGGCGACGCCCGGGGCCGGG GACTGGCGTGTCTGGCGCTCCGCCGCGGACACGCTCGCACTTTACGACGC TCTCGCCCTCCGGTTTGGGCAGGAGTTCTGCGGGCGCGTGTCGCGGCCGA AGTTTAAGACAACACTGCCGTGTTCGGCGGCGGTGGGAGCGAGCGGCTTT CTGGGCGACGATAGGTCGGGGTCGCCACCAACGCCCTCTTCCCCGGACTC ACCCCCTGCGCTGATCGTGGCGCCCGCCGCTCCCCACCGCGTGGACATCT TGAGGGACGCCAAGACGGTCGGAGCGTTCTTGAGGAGCCTCTTGGGGCTG CGGCAGTTTCTC back to top
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