mRNA_E-fasciculatus_F_contig12191.1700.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12191.1700.1
Unique NamemRNA_E-fasciculatus_F_contig12191.1700.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12191.1700.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.270e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3 
Query:    3 VYIPAMKQFVLEFKNLAGQQQGVASITTAQDAARVAKRVQSKRSADGITP 152
            VYIPAMKQFVLEFKNLAGQQQGVASITTAQDAARVAKRVQSKRS +GITP
Sbjct: 1161 VYIPAMKQFVLEFKNLAGQQQGVASITTAQDAARVAKRVQSKRSGEGITP 1210
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BLAST of mRNA_E-fasciculatus_F_contig12191.1700.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.660e-7
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 3 
Query:    3 VYIPAMKQFVLEFKNLAGQQQGVASITTAQDAARVA 110
            VYIPAMKQFVLEFKNLAGQQQGVASITTA  A RVA
Sbjct: 1008 VYIPAMKQFVLEFKNLAGQQQGVASITTAH-AVRVA 1042
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12191.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA1_9PHAE2.270e-1996.00RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7G8E5_ECTSI1.660e-791.67Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12191contigE-fasciculatus_F_contig12191:2746..3574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12191.1700.1prot_E-fasciculatus_F_contig12191.1700.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12191 2763..3574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.0854142-UTR-E-fasciculatus_F_contig12191:2745..27621622927728.0854142-UTR-E-fasciculatus_F_contig12191:2745..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12191 2746..2762 +
1695995668.5338187-UTR-E-fasciculatus_F_contig12191:2745..27621695995668.5338187-UTR-E-fasciculatus_F_contig12191:2745..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12191 2746..2762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.105181-CDS-E-fasciculatus_F_contig12191:2762..28351622927728.105181-CDS-E-fasciculatus_F_contig12191:2762..2835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12191 2763..2835 +
1695995668.5436392-CDS-E-fasciculatus_F_contig12191:2762..28351695995668.5436392-CDS-E-fasciculatus_F_contig12191:2762..2835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12191 2763..2835 +
1622927728.1242344-CDS-E-fasciculatus_F_contig12191:3299..35741622927728.1242344-CDS-E-fasciculatus_F_contig12191:3299..3574Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12191 3300..3574 +
1695995668.5523672-CDS-E-fasciculatus_F_contig12191:3299..35741695995668.5523672-CDS-E-fasciculatus_F_contig12191:3299..3574Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12191 3300..3574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12191.1700.1

>prot_E-fasciculatus_F_contig12191.1700.1 ID=prot_E-fasciculatus_F_contig12191.1700.1|Name=mRNA_E-fasciculatus_F_contig12191.1700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MKQFVLEFKNLAGQQQGVASITTAQDAARVAKRVQSKRSADGITPPPPPL
APEDAAVSRPTGSEGGGGDGGEEENDARQEAAPAPAPPAHRRSQRRRLTR
SSSTTTGGGGGGGGAS
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mRNA from alignment at E-fasciculatus_F_contig12191:2746..3574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12191.1700.1 ID=mRNA_E-fasciculatus_F_contig12191.1700.1|Name=mRNA_E-fasciculatus_F_contig12191.1700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=829bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12191:2746..3574+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGTACATTCCGGCGATGAAGCAGTTCGTGCTGGAGTTCAAGAACCTT
GCCGGGCAGCAGCAGGGTGTGGCCAGCATCACGACCGCACGTGAGAAACA
AACTCATCATTTTACTGCACACAATGCGGGCCAGGATGCTTGTTGACGAA
TGGTCTACTCCTTTTGGTGTTATTGTCTCTATGCCTGTACGAGATGCCGT
GCGGGTCGTGACCCAGCAAGGCAAGGGCGCGGTTATCCGTGCTGCAGCTC
TTGCTCTTGATAACGTGTGCCGAAGGGGAGCGATGCTGTTTGCGAGTTTT
TTTTTAAATCTTTTTCAAGGTGTTTTTTCCTCGTGTTTTTGTGCATTAGG
AAGTTGAACACGTTTGTTGGGGTATAGGACAAGGGTTTGGTGTGCTTACT
AGATATACGCAACCTGAGCATGAAAGTCGTTGCAGATTCGACCCTTGCGC
GCGGAGACCTTAGCATATGTTGGTTTTACCACGCGGCACGCCCTTCACAC
GGTCCCCCCCCCCCCCNNNNNNNNCCCCCCCCCCATACCTCCTGGCCTTC
GCAGAAGATGCCGCTCGAGTAGCGAAGCGCGTACAGTCCAAAAGGTCTGC
TGACGGCATCACGCCGCCGCCGCCGCCGCTTGCACCGGAAGATGCCGCGG
TTTCACGTCCAACGGGTAGCGAGGGAGGAGGCGGCGACGGGGGCGAAGAA
GAAAACGATGCCCGACAAGAGGCGGCTCCCGCCCCCGCCCCCCCCGCCCA
CCGCCGAAGCCAACGGCGCCGATTGACGCGTTCGAGCAGTACCACCACCG
GCGGCGGAGGCGGCGGCGGTGGCGCATCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12191:2746..3574+

>mRNA_E-fasciculatus_F_contig12191.1700.1 ID=mRNA_E-fasciculatus_F_contig12191.1700.1|Name=mRNA_E-fasciculatus_F_contig12191.1700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12191:2746..3574+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCAGTTCGTGCTGGAGTTCAAGAACCTTGCCGGGCAGCAGCAGGG
TGTGGCCAGCATCACGACCGCACATGAAGCAGTTCGTGCTGGAGTTCAAG
AACCTTGCCGGGCAGCAGCAGGGTGTGGCCAGCATCACGACCGCACAAGA
TGCCGCTCGAGTAGCGAAGCGCGTACAGTCCAAAAGGTCTGCTGACGGCA
TCACGCCGCCGCCGCCGCCGCTTGCACCGGAAGATGCCGCGGTTTCACGT
CCAACGGGTAGCGAGGGAGGAGGCGGCGACGGGGGCGAAGAAGAAAACGA
TGCCCGACAAGAGGCGGCTCCCGCCCCCGCCCCCCCCGCCCACCGCCGAA
GCCAACGGCGCCGATTGACGCGTTCGAGCAGTACCACCACCGGCGGCGGA
GGCGGCGGCGGTGGCGCATCGAAGATGCCGCTCGAGTAGCGAAGCGCGTA
CAGTCCAAAAGGTCTGCTGACGGCATCACGCCGCCGCCGCCGCCGCTTGC
ACCGGAAGATGCCGCGGTTTCACGTCCAACGGGTAGCGAGGGAGGAGGCG
GCGACGGGGGCGAAGAAGAAAACGATGCCCGACAAGAGGCGGCTCCCGCC
CCCGCCCCCCCCGCCCACCGCCGAAGCCAACGGCGCCGATTGACGCGTTC
GAGCAGTACCACCACCGGCGGCGGAGGCGGCGGCGGTGGCGCATCG
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