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Homology
BLAST of mRNA_E-fasciculatus_F_contig12173.1690.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE) HSP 1 Score: 544 bits (1401), Expect = 1.400e-184 Identity = 279/324 (86.11%), Postives = 293/324 (90.43%), Query Frame = 1
Query: 1 VADCAAYPEEIPSSSTWMIVTCEGCVGTEATSAQAITCATGADAFVATPSPVAPVVAGGEEALTLPGAGPSTCEAVTITGPRAGGYTVGGSVNGAADVYSDDGLWRMFFASPAPALSRRARRNLYFSADGGDAGALSAGLAADPRXXXXXXXXXSRRGLQTCDGYWYITPVEDRYPAYAVMDCAEHPVDIVSSDWLYLDCEECEVATADPKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPAPGSSSSASSSTTCTELSVTGDFPGNYTANGTYRGKLDFFNDDGSVNLYFELADSSRRLLSSAGEEREGEGEGKRRLLPGE 972
VADCAAYPEEI SSSTWMIVTCEGCVGTEATS+Q ITCATGADAFVATPSPV+PVVAGG E +TLPGAGPSTCEAVT+TGPRAGGYTVGGS+NGAADVYSDDGLWRMFFASPAPALSRRARR+L+FSADGGDAG LSA LA D R RRGLQTCDGYWYITPV+DRYPAYAVMDC EHPVDIVSSDWLYLDCE+CEV TAD KPDASCTGAPAN+KRGGSFNTPAPV LDFVGTP P +SSS S+STTCTEL VTG+FPGNYTANGTYRGKLDFFNDDG+VNLYFELADSSRRLLSSAGEEREG RRLLPGE
Sbjct: 334 VADCAAYPEEIASSSTWMIVTCEGCVGTEATSSQTITCATGADAFVATPSPVSPVVAGGGETITLPGAGPSTCEAVTVTGPRAGGYTVGGSINGAADVYSDDGLWRMFFASPAPALSRRARRSLHFSADGGDAGPLSAELAPDTRDTH------DRRGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANIKRGGSFNTPAPVVLDFVGTPGPDTSSSGSASTTCTELYVTGEFPGNYTANGTYRGKLDFFNDDGTVNLYFELADSSRRLLSSAGEEREGG----RRLLPGE 647
BLAST of mRNA_E-fasciculatus_F_contig12173.1690.1 vs. uniprot
Match: D7G5Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q9_ECTSI) HSP 1 Score: 535 bits (1377), Expect = 3.130e-184 Identity = 276/324 (85.19%), Postives = 288/324 (88.89%), Query Frame = 1
Query: 1 VADCAAYPEEIPSSSTWMIVTCEGCVGTEATSAQAITCATGADAFVATPSPVAPVVAGGEEALTLPGAGPSTCEAVTITGPRAGGYTVGGSVNGAADVYSDDGLWRMFFASPAPALSRRARRNLYFSADGGDAGALSAGLAADPRXXXXXXXXXSRRGLQTCDGYWYITPVEDRYPAYAVMDCAEHPVDIVSSDWLYLDCEECEVATADPKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPAPGSSSSASSSTTCTELSVTGDFPGNYTANGTYRGKLDFFNDDGSVNLYFELADSSRRLLSSAGEEREGEGEGKRRLLPGE 972
VADCAAYPEEI SSS WMIVTCEGCVGTEATSAQAITCATG DAFVATPSPV+PVVAGGEE +TLPGAGPSTCEA+T+TGPRAGGYTV GS+NGAAD YSDDGLWRMFFA PA ALSRRARR+LYFSA+GGDA LS LA D R RRGLQTCDGYWYITPV+DRYPAYAVMDC EHPVDIVSSDWLYLDCE+CEV TAD KPDASCTGAPANLKRGGSFNTPAPVALDFVGTP PGSSSS SSSTTCTEL VTGDFPGNYTANGTYRG+LDFF+DDG+ NLYFELADSSRRLLSSA EEREGE RRLLPGE
Sbjct: 267 VADCAAYPEEIASSSAWMIVTCEGCVGTEATSAQAITCATGTDAFVATPSPVSPVVAGGEETVTLPGAGPSTCEAITVTGPRAGGYTVEGSINGAADAYSDDGLWRMFFAPPASALSRRARRSLYFSAEGGDAVPLSTELAPDTRDTH------DRRGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPGPGSSSSGSSSTTCTELYVTGDFPGNYTANGTYRGRLDFFSDDGTFNLYFELADSSRRLLSSADEEREGE----RRLLPGE 580
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_008780.1 |
| Exons | 6 |
| Model size | 972 |
| Cds size | 972 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12173.1690.1 >prot_E-fasciculatus_F_contig12173.1690.1 ID=prot_E-fasciculatus_F_contig12173.1690.1|Name=mRNA_E-fasciculatus_F_contig12173.1690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=324bp
VADCAAYPEEIPSSSTWMIVTCEGCVGTEATSAQAITCATGADAFVATPS PVAPVVAGGEEALTLPGAGPSTCEAVTITGPRAGGYTVGGSVNGAADVYS DDGLWRMFFASPAPALSRRARRNLYFSADGGDAGALSAGLAADPRDTRDT RDGRSRRGLQTCDGYWYITPVEDRYPAYAVMDCAEHPVDIVSSDWLYLDC EECEVATADPKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPAPGSSSS ASSSTTCTELSVTGDFPGNYTANGTYRGKLDFFNDDGSVNLYFELADSSR RLLSSAGEEREGEGEGKRRLLPGE back to topmRNA from alignment at E-fasciculatus_F_contig12173:59..4036+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12173.1690.1 ID=mRNA_E-fasciculatus_F_contig12173.1690.1|Name=mRNA_E-fasciculatus_F_contig12173.1690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12173:59..4036+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GTAGCCGACTGCGCTGCCTACCCTGAGGAGATACCGTCTTCCTCCACCTG
GATGATAGTCACCTGCGAGGGCTGCGTCGGCACAGAGGCCACCTCCGCCC
AGGCCATCACCTGCGCCACCGGCGCCGACGCGTTCGTCGCGACCCCTTCT
CCTGTGGCGCCGGTGGTGGCCGGGGGTGAAGAGGCGCTCACCTTGCCGGG
CGCGGGTCCATGTGAGTCTGAAGGGGGGCGCACTTATGTTTTGAATGCCT
TTTTTAGAGGCTAGATAGGCTATTGACCACGAGTCCGCAAGCATTGTTCC
CACAAGACCGATCAACGATGGCCAGTCCATCCCTTCTCACTTTGCCAAAG
GTGGCTCAAAATTGTTTTCCCTGTCTGTCTATCCTATCGATATCACTTGG
GGGGGGGGTTGCTGTGCCTGGTCGTGTTTTCTTGGTTATCGAGCTCTTCT
TTCTGGGTGCATGTGAAGTGCACTTGGGGGAGGGGGTTGCTGTGCCTGGT
CGTGCTCGGTGGGTTATAGAGGTTATGGAGTATTTGCTCCCGCTGGTTAG
TGGTCGGTAAGAGGCCATGATCTGATCTGTCGTGAAAGTAAACGGTGACT
TCTGATCTGATCTCTCTCTCCATTGCACACAACGACTGACTCGGTTGGGA
TGGATACTGTTCTCATGATGCGTGGCGTTGCTCCCGATGTGTGCTGCAGA
TCCTCTCGATTCCTCTTCTAAGCCCCCTGCCTTGCAGTGCGGAGACGTTC
ATGCTTTCTCTACCAAGGGACCGACGCGTGATCGTCGGTCACTTTTTATT
TTTCCCCGTTGCCCATTTATGACCCTCGCTTGCATATTCTCACTTTTTGA
CAATTCCGTGTGAGTAGCCAATGATACCCCCGTTTGTTGAAAATCATTTG
CAGCGACCTGTGAAGCGGTCACCATAACCGGACCGCGAGCCGGAGGCTAC
ACCGTGGGAGGCTCGGTCAACGGCGCCGCGGACGTGTACAGCGATGACGG
CTTGTGGCGCATGTTCTTCGCTTCACCGGCGCCCGCCCTGAGCAGGAGGG
CGCGAAGGAACCTTTATTTCAGCGCGGACGGGGGTGACGCAGGTGCGGTG
GGAGTGCGAGGGGGGGGTACTAGGTGGTCAGGGTTGTTACAATATTTTTT
TCAACTTCTCTTGGTGGTTTGGTGTTTGCTCTCGATTGTTGATCCTGCAC
TTCTATCATCTTCCTGGTGCATCTAGAGTACTGCTGCTGTTGTAGCGGGC
TGCTGTAGGCTCAGAATGCAATAGACAACGTACATAGGTGTCCCTCATTT
TACGGATTTATCCTGCTATTAATACTATCACGCACTCGCTCGCGGTCCAC
GGTGACATGGAGGCACGCAGCAATAATGTAGCCTCCGCCCCCCCCCCAGA
CAATCTTAATCTTTGTCTCACCTCCCCTGTTGAAATGAAATTGAAATGAT
TGTTGTTGAAATGATTGTTGTCGTCTCGTCATGGTCGTCGTGGTGGTTAG
GTGCACTCTCCGCCGGGCTCGCTGCCGACCCACGTGACACGCGTGACACG
CGTGACGGGCGTAGCCGACGCGGGCTACAGACGTGTGACGGGTACTGGTA
CATCACTCCCGTGGAGGACAGATACCCTGCCTACGCGGTGAGGGACCAAC
TTTAACTTTTTCTTTGCTATCTTCCCGCTCGCAGTCTACCAGAAGCACCT
CTGTAGCCTTTTGGATATTCCGCTGATTTAATTCTTTGAGATGGTACTTT
TGGGGTTTTGGCTTGCCCCGAGACTCTGCTATCCCAGCCCCCCGCAACCG
AATAGCCTCGTGGGTGCTATTGGAAACCCTGTACTGTAGGTGAACAAAAT
TTTCCTCTCCCCGGACCCCCCACCCCCCGCGCGCGGGAATCGTTGAGGAG
ATGCCTGACTCGCTCGTGGTTGGTTTTGTTTTGTTTTGTTTTGTTTCGCC
GTTGACTCACGATCTCACGATGCTTTGGGGTGGTGTTGCCTTGGGCGATC
GATGTGCGACGCTACAGAGCTACAGAGCTCGGACAGGGTGTTGTGTTTGC
TCTTGCTGCTTCCTAGTTTTGACGCAATTTCCCCCCGACTATCGCTGCAA
CTGGGCAACACCACTCTTCAACAGTTGCCTTTGGGTGGGGTCTAACTCTA
TCTGTACCACGGTGCCCAGGCCGCCGCTGTTTCATGGAAAACTATCGTAA
CATTTAAGAGGTGTTTGCGGCTTCATAATGGCTGATTGTTACGATATATT
TTGACCACAAACCTTTGACATATTTCGTTTGGTTTTGTCTTTCAGCAGTA
TTTGTTTAGCCCGTGGTCGACACAAGTGCGGTGCGATGCTGTGCTCTGCT
TTGCTCGGCCACCCTCCAAAGGTCAAGGTCAAGCTAGTCATTGATACCGC
CCCCTCAGTAATCGTACATTTACGGCTTCCACGGACGGACTCTCTATGCC
GCAGCACCTCTCACCAACAGTACTATTTACATGTATTATAGTTGGCTTCG
GTACTTGTCCGTCTGTCTGTCTCGTTTTGCTTCTCTTGTTCTTGGTGGCC
TCTATCCTTTAATCCTACATACCTGTAAGCCTCAAGTGACGACGCGACAT
TTTCCTCAAATTCATTGCTTCGCCGTGTGTGTGTTTGATTTTTTGTAATA
TTTAATCCCGTTTCCCTTTTTTTTTTTTGACTGACAGGTGATGGACTGCG
CGGAGCACCCGGTGGACATCGTGTCTTCGGATTGGCTTTACTTGGATTGC
GAAGAATGCGAGGTGTGCATGACGCACGCGTGGCTTGATGCGTATGGCGG
TGTGATAACGTTTTGAGCAGGCGTTTGTCGGCGTGTGTATTGGCGTCTTG
TTTGCGGTGTTTGCTTCTAGAAGTACATCACAGACGGAATATATACTACT
CCCGGAGATAATTAGGTGGGTCTGCTTTGTTCTCTCGATGAGGTTGTGTG
AAATCTTCGCAAAGTGAGAAGTGATGCCTGCTGAAAACTGGAATCGATGT
ATGAGTCTGTTGAAATCCTTCCCCTGAGGTGCCGTGCTTTTGTTTTTTGC
GGTTACGTTTCAAATCTGAAACGTCCGCATGACTCCCGCCGCATGGTGTA
TTGTCGCGGAAAACCTCAGGTTGCAACCGCCGATCCCAAGCCAGACGCAT
CCTGCACGGGGGCTCCGGCGAATCTCAAGAGGGGGGGTAGCTTCAACACC
CCTGCCCCGGTGGCGCTTGACTTTGTGGGTACCCCCGCTCCCGGCAGCTC
TTCCTCCGCCTCCTCGTGTGAGTCTGTTTGTCAAGTCCCGTGTCTTGCTT
GGCGTTCGTGTGCGTAGCTCGTTTCCGTTCTGTTTGTGTGCAGCAGGTGT
CTTGTCCCCTCTTGAAGGTTTAGCCTGCTACCCACAGGGAGATGCCATCG
CGGTATGCTGTTCGAGGAGGAATTGTAGAGACACAGGTTGGTCGTCCAAC
AACTCTTCCGTATTCTCGTCATGCGTGGTTTCGACTCTCCGTGCCCCCGA
TAGTTGTGACCAGCGATTCTGCTTTTTTGTTTTGTTTTTTTTTCCTCCTC
GTGGCAGGTCAGCAACCACAACCACAACCACAACCACGGACTTCTACCAA
TTTTGGCCCTCCGATTCTGCTTCTGTTCTGAATTTTGTTGTTCTCCCCAG
TGGCTTTATCCCTTCGTCTCGTCTCGATGCACGTACCGCTTCTACCGATT
ATGACCCTGCGATTCTGCTTCTTCCTTTCCTCTCCGTGACGACGTCGTCT
TGTCTGGACGGGCCAGCAACCACATGCACCGAGCTCTCTGTCACAGGCGA
CTTCCCCGGCAACTACACCGCCAACGGCACCTACCGTGGGAAGCTCGACT
TTTTCAACGACGACGGGTCGGTTAACCTTTACTTCGAGCTGGCGGACTCC
AGCCGTCGATTGCTCTCCTCCGCGGGTGAAGAGCGGGAAGGGGAAGGAGA
AGGAAAGAGGCGTCTTTTGCCCGGGGAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12173:59..4036+ >mRNA_E-fasciculatus_F_contig12173.1690.1 ID=mRNA_E-fasciculatus_F_contig12173.1690.1|Name=mRNA_E-fasciculatus_F_contig12173.1690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12173:59..4036+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GTAGCCGACTGCGCTGCCTACCCTGAGGAGATACCGTCTTCCTCCACCTG GATGATAGTCACCTGCGAGGGCTGCGTCGGCACAGAGGCCACCTCCGCCC AGGCCATCACCTGCGCCACCGGCGCCGACGCGTTCGTCGCGACCCCTTCT CCTGTGGCGCCGGTGGTGGCCGGGGGTGAAGAGGCGCTCACCTTGCCGGG CGCGGGTCCATGTAGCCGACTGCGCTGCCTACCCTGAGGAGATACCGTCT TCCTCCACCTGGATGATAGTCACCTGCGAGGGCTGCGTCGGCACAGAGGC CACCTCCGCCCAGGCCATCACCTGCGCCACCGGCGCCGACGCGTTCGTCG CGACCCCTTCTCCTGTGGCGCCGGTGGTGGCCGGGGGTGAAGAGGCGCTC ACCTTGCCGGGCGCGGGTCCATCGACCTGTGAAGCGGTCACCATAACCGG ACCGCGAGCCGGAGGCTACACCGTGGGAGGCTCGGTCAACGGCGCCGCGG ACGTGTACAGCGATGACGGCTTGTGGCGCATGTTCTTCGCTTCACCGGCG CCCGCCCTGAGCAGGAGGGCGCGAAGGAACCTTTATTTCAGCGCGGACGG GGGTGACGCAGCGACCTGTGAAGCGGTCACCATAACCGGACCGCGAGCCG GAGGCTACACCGTGGGAGGCTCGGTCAACGGCGCCGCGGACGTGTACAGC GATGACGGCTTGTGGCGCATGTTCTTCGCTTCACCGGCGCCCGCCCTGAG CAGGAGGGCGCGAAGGAACCTTTATTTCAGCGCGGACGGGGGTGACGCAG GTGCACTCTCCGCCGGGCTCGCTGCCGACCCACGTGACACGCGTGACACG CGTGACGGGCGTAGCCGACGCGGGCTACAGACGTGTGACGGGTACTGGTA CATCACTCCCGTGGAGGACAGATACCCTGCCTACGCGGTGCACTCTCCGC CGGGCTCGCTGCCGACCCACGTGACACGCGTGACACGCGTGACGGGCGTA GCCGACGCGGGCTACAGACGTGTGACGGGTACTGGTACATCACTCCCGTG GAGGACAGATACCCTGCCTACGCGGTGATGGACTGCGCGGAGCACCCGGT GGACATCGTGTCTTCGGATTGGCTTTACTTGGATTGCGAAGAATGCGAGG TGATGGACTGCGCGGAGCACCCGGTGGACATCGTGTCTTCGGATTGGCTT TACTTGGATTGCGAAGAATGCGAGGTTGCAACCGCCGATCCCAAGCCAGA CGCATCCTGCACGGGGGCTCCGGCGAATCTCAAGAGGGGGGGTAGCTTCA ACACCCCTGCCCCGGTGGCGCTTGACTTTGTGGGTACCCCCGCTCCCGGC AGCTCTTCCTCCGCCTCCTCGTGTTGCAACCGCCGATCCCAAGCCAGACG CATCCTGCACGGGGGCTCCGGCGAATCTCAAGAGGGGGGGTAGCTTCAAC ACCCCTGCCCCGGTGGCGCTTGACTTTGTGGGTACCCCCGCTCCCGGCAG CTCTTCCTCCGCCTCCTCGTCAACCACATGCACCGAGCTCTCTGTCACAG GCGACTTCCCCGGCAACTACACCGCCAACGGCACCTACCGTGGGAAGCTC GACTTTTTCAACGACGACGGGTCGGTTAACCTTTACTTCGAGCTGGCGGA CTCCAGCCGTCGATTGCTCTCCTCCGCGGGTGAAGAGCGGGAAGGGGAAG GAGAAGGAAAGAGGCGTCTTTTGCCCGGGGAACAACCACATGCACCGAGC TCTCTGTCACAGGCGACTTCCCCGGCAACTACACCGCCAACGGCACCTAC CGTGGGAAGCTCGACTTTTTCAACGACGACGGGTCGGTTAACCTTTACTT CGAGCTGGCGGACTCCAGCCGTCGATTGCTCTCCTCCGCGGGTGAAGAGC GGGAAGGGGAAGGAGAAGGAAAGAGGCGTCTTTTGCCCGGGGAA back to top
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