mRNA_E-fasciculatus_F_contig12102.1641.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A6H5L1F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE) HSP 1 Score: 360 bits (924), Expect = 3.790e-122 Identity = 195/290 (67.24%), Postives = 216/290 (74.48%), Query Frame = 1
Query: 52 MAAMFVDEGYDAPPVLPDEPPSPTWWPLEESLVARGS-LPIYTFESQFAGEHESALFDDDGNDNQSREV--PSSVDADIRFLRGLNLEGEMAAGPCPAPLWRVMVNPAATAADGRGKRPRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSE-NVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
MAA+ VDE PPVLP++PPSPTWWPLEES ARG LPIYTF SQFAGEHE LF+ DGND+Q+RE P V AD+ FLRGLNL+G A G APL R MV+PA K+ RYD +NLPTPATLVADLKA NFKSAITDM+DDG APLPYLGY VF CADEVHEDDE Q FATSE+LA A AES VV+P AD GD+ Y E + SRAQL ALKQYVL QRVFYVLIHT+R + EL D +SSDV+LL LGVSPATGNLVGVIA+Q CHN CD
Sbjct: 1 MAALVVDEAGGEPPVLPEDPPSPTWWPLEESFTARGRRLPIYTFASQFAGEHELVLFNGDGNDDQNREALSPEQV-ADVDFLRGLNLQGLEAGGAATAPLRRFMVSPAXXXXXXX-KKSRYDEDNLPTPATLVADLKATGNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSEDLAEAIAEAESEVVDPEADEGDMGAEAYREMTLRSRAQLTALKQYVLKQRVFYVLIHTDRRHD-AELADKDMSSDVILLALGVSPATGNLVGVIAIQTCHNLCD 287
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A6H5LG80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG80_9PHAE) HSP 1 Score: 203 bits (516), Expect = 3.430e-61 Identity = 122/231 (52.81%), Postives = 139/231 (60.17%), Query Frame = 1
Query: 352 MVNPAATAADGRGKRPRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDL--------------------------------------------EYSGYSE-NVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
MV+PAA AA G GK+ RYD +NLPTPATLVADLK A NFKSAITDM+DDG APLPYLGY VF CADEVHEDDE Q FATS LA + ES VV+ AD GD+ Y E + SRAQL ALKQ+VL +RVFYVLI +R +Y + D +SSDV+LL +GVSPATGNLVGVIA+Q HN CD
Sbjct: 1 MVSPAAAAAGG-GKKSRYDEDNLPTPATLVADLKEARNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSRGLAEAISEEESEVVDVEADEGDMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEIALGSRAQLTALKQHVLKRRVFYVLIRADRR-QYADPDDEDMSSDVILLAMGVSPATGNLVGVIAIQAYHNLCD 229
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A4Q6DF08_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6DF08_9PROT) HSP 1 Score: 85.9 bits (211), Expect = 2.930e-16 Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 1
Query: 397 PRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
P L T A ++++L+ NF+ T+ +D + +PY GY DE+H D +Q FA +D D +++G + ++ SR +AL+ YVL+ +FY+LIH ++ Y + + L VLL LGVSPATGNLVG ++ Q+CHN CD
Sbjct: 73 PNRSLTGLATAAVVLSELRIT-NFQ---TEHINDFDSTQIPYPGYHPGTENDEIHTDRGKQYMFAPE-----------------MSDHLDTDFTGKNADL-SRVSHSALRSYVLSHHLFYILIH-DKPKPYEDFMFSQL---VLLFALGVSPATGNLVGAVSSQVCHNLCD 217
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A1X6NUI1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUI1_PORUM) HSP 1 Score: 76.6 bits (187), Expect = 9.170e-13 Identity = 65/220 (29.55%), Postives = 100/220 (45.45%), Query Frame = 1
Query: 250 EVPSSVDADIRFLRGLNLEGEMAAGPCPAPLWRVMVNPAATAADGRGKRPRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
E+P+ V AD+ FLR L E G + + PA R + LPT A ++ADL NF + + + D + P + AD++H + +Q F T E DL G ++++ L AL+ YV+++ V++V++HT V + + P + VLL +GVSPA+GNLVG +Q CHN CD
Sbjct: 47 ELPAGVAADVAFLRSWALPDECHYGNPQVGMSPFIAEPAV----------RPHSVGLPTAAEVLADL-LVDNF-AGLPGVALDTVDPPFVPKADPMVTGADQIHTNGIKQYMFCTEPVEVVPYGVQEE----------DL--PGMQASIDA---LDALRSYVVDRHVYFVVVHTPLVGQE----EFPFPNLVLLWAVGVSPASGNLVGAWGVQFCHNLCD 235
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A847G515_9CHLR (Uncharacterized protein n=1 Tax=Leptolinea sp. TaxID=2699749 RepID=A0A847G515_9CHLR) HSP 1 Score: 73.9 bits (180), Expect = 5.780e-12 Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 1
Query: 271 ADIRFLRGLNLEGEMAAGPCPAPLWRVMVNPAATAADGRGKRPRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELC-DTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
AD+ FLRGL G C L ++V+ + LP + ++ L+A +FKS+ N D ++ +PY GY DE+H D EEQ+ F E+L + ++P D Y + E L++YV + ++YVL+H E PE + S V+L +GVS TGNLVG + Q CHNFCD
Sbjct: 37 ADVVFLRGLP-RTRCWYGACDCDLHPIIVSTERKFTE------------LPLASEVLKALRAR-DFKSSHI-ANLDAQS--IPYPGYHPDTDNDEIHTDSEEQSIFCRMEDLQHREGE-----IDPEYSPDDSFY-WHQE----------LRKYVWDGHLYYVLLHEE-----PENHGEFAFSEWVILFAVGVSKKTGNLVGAVTHQACHNFCD 212
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: A0A518I9E7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I9E7_9PLAN) HSP 1 Score: 63.9 bits (154), Expect = 2.410e-8 Identity = 53/168 (31.55%), Postives = 81/168 (48.21%), Query Frame = 1
Query: 418 LPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCADEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVV----EYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
LPT ++ L+A+ I + D N P P GY DE+H D +EQ FA E+ + + + +P E+ E +SR A+L+ VL ++YV IH + V EY E V++ +GVS A+GNL+G+++ Q+CHN CD
Sbjct: 80 LPTARRVLELLRASCFESEHIKSL--DVVNIPFP--GYHPRTKNDEIHSDPQEQCLFAKDEK---DQYELDDNINDP-------EWRLRDE--QSRGCHASLRAAVLENHLYYVQIHAKPKVYDGSEYREY--------VIVFAVGVSRASGNLIGMVSFQVCHNLCD 223
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: UPI001CC0B2F1 (hypothetical protein n=1 Tax=Gordonia bronchialis TaxID=2054 RepID=UPI001CC0B2F1) HSP 1 Score: 63.2 bits (152), Expect = 2.600e-8 Identity = 50/175 (28.57%), Postives = 75/175 (42.86%), Query Frame = 1
Query: 403 YDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCA------DEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
+ +PT ++ L A + D++ +PY GY+ + D++H D E Q+ F T E D G G ++ R LK +V++ + YVLIH R + D S V+L +GVSP TGNL+GV+ Q+CHN CD
Sbjct: 49 HSAGQIPTGREVLRSLGVARFCSTQTADLDATS----MPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTDE------------------DNG-----GIPDDRHQR-----LKSHVIDGHLTYVLIHEPR----EQHDDFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNLCD 187
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Match: D0L311_GORB4 (Uncharacterized protein n=1 Tax=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 / NBRC 16047 / NCTC 10667) TaxID=526226 RepID=D0L311_GORB4) HSP 1 Score: 62.8 bits (151), Expect = 1.690e-7 Identity = 51/178 (28.65%), Postives = 76/178 (42.70%), Query Frame = 1
Query: 394 RPRYDNNNLPTPATLVADLKAAANFKSAITDMNDDGRNAPLPYLGYSVFRCA------DEVHEDDEEQNFFATSEELAATKATAESRVVNPTADGGDLEYSGYSENVESRAQLAALKQYVLNQRVFYVLIHTERVVEYPELCDTPLSSDVLLLGLGVSPATGNLVGVIAMQMCHNFCD 909
R + +PT ++ L A + D++ +PY GY+ + D++H D E Q+ F T E D G G ++ R LK +V++ + YVLIH R + D S V+L +GVSP TGNL+GV+ Q+CHN CD
Sbjct: 214 RELHSAGQIPTGREVLRSLGVARFCSTQTADLDATS----MPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTYE------------------DNG-----GIPDDRHQR-----LKSHVIDGHLTYVLIHEPR----EQHDDFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNLCD 355 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12102.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12102.1641.1 >prot_E-fasciculatus_F_contig12102.1641.1 ID=prot_E-fasciculatus_F_contig12102.1641.1|Name=mRNA_E-fasciculatus_F_contig12102.1641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=304bp LRALPGGSIFRPRTRPLMAAMFVDEGYDAPPVLPDEPPSPTWWPLEESLVback to top mRNA from alignment at E-fasciculatus_F_contig12102:1736..2647+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12102.1641.1 ID=mRNA_E-fasciculatus_F_contig12102.1641.1|Name=mRNA_E-fasciculatus_F_contig12102.1641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12102:1736..2647+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12102:1736..2647+ >mRNA_E-fasciculatus_F_contig12102.1641.1 ID=mRNA_E-fasciculatus_F_contig12102.1641.1|Name=mRNA_E-fasciculatus_F_contig12102.1641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12102:1736..2647+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |