mRNA_E-fasciculatus_F_contig12081.1628.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12081.1628.1
Unique NamemRNA_E-fasciculatus_F_contig12081.1628.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.370e-21
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 3 
Query:  108 SRLFIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            SR F FTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI
Sbjct:   42 SRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 87
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A1X6NVD9_PORUM (TAFII55_N domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVD9_PORUM)

HSP 1 Score: 70.5 bits (171), Expect = 9.000e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:   63 HAGGRGRKRVLAICFS--RLFIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            +AGG   KR  AI F+  R  IFT+ G +YPA L+D+P ++ETQK+ DKRTFFKSGD+  +L+
Sbjct:   59 NAGGSRHKRQFAIRFTSERKAIFTLHGAEYPAELLDLPAIVETQKSADKRTFFKSGDLRHVLV 121
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 4.950e-12
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 3 
Query:  120 IFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            IFT+DGK YPA L+D+PC++ET KT DKRTF+KSGD+ Q+L+
Sbjct:   51 IFTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLV 92
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.470e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  117 FIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            ++FT+DG++YPARLV++PC LET KT D   ++KS D+GQMLI
Sbjct:   48 YVFTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLI 90
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A7S3M9W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9W3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.890e-10
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:   96 AICFSRLFIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQML 242
            A   S  FIF M+GK+YPA L+++P ++ET KT D + F KSGD+GQ+L
Sbjct:   57 ASTMSNEFIFIMNGKEYPALLMNLPTIVETHKTFDNKIFLKSGDIGQVL 105
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A7S4HTG7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HTG7_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 4.120e-9
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  129 MDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            +DG+K P RL D+PCV+ET KT+D+  FFK+GDVGQM+I
Sbjct:   68 VDGEKLPMRLADLPCVIETHKTVDRVGFFKTGDVGQMII 106
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A5J4WMP9_9EUKA (Putative ATP-dependent RNA helicase eIF4A n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WMP9_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-8
Identity = 23/39 (58.97%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:  129 MDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            MDG+ +PA LV++PC++E+QKT DK+TF+K+ D+ QMLI
Sbjct:  305 MDGEIFPATLVNLPCIIESQKTYDKKTFYKTADISQMLI 343
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: UPI0001CB980D (transcription initiation factor TFIID subunit 7-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB980D)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-8
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:   60 VHAGGRGRKRVLAICF---SRLFIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            V  G    K  LAI F    R      +G+  PA+LVD+PC++E+ KT+DK+TF+K+ D+ QML+
Sbjct:   32 VQTGNLNLKEKLAIEFHADGRHGTVRFEGESTPAKLVDLPCIIESHKTVDKKTFYKAADIAQMLV 96
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A1X2H2C4_SYNRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H2C4_SYNRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.860e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  123 FTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            F  DGKKY A LVD+P ++E+QKTLDK+ FFK  D+ QML+
Sbjct:  100 FYADGKKYDATLVDLPTIIESQKTLDKKQFFKVADISQMLL 140
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BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Match: A0A397VEC4_9GLOM (TAFII55 protein conserved region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VEC4_9GLOM)

HSP 1 Score: 59.3 bits (142), Expect = 1.980e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  108 SRLFIFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLI 245
            SR  IFT + +KY ARLVD+PC++E QKT + + F+K  D+ QMLI
Sbjct:  127 SRRAIFTFENQKYSARLVDLPCIIEAQKTFNNKQFYKVADICQMLI 172
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12081.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI6.370e-2195.65TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A1X6NVD9_PORUM9.000e-1353.97TAFII55_N domain-containing protein n=1 Tax=Porphy... [more]
A0A2V3IJD7_9FLOR4.950e-1266.67Transcription initiation factor TFIID subunit 7 n=... [more]
A0A835YLK6_9STRA1.470e-1060.47TAFII55 protein conserved region-domain-containing... [more]
A0A7S3M9W3_9STRA6.890e-1053.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4HTG7_9EUKA4.120e-964.10Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5J4WMP9_9EUKA1.080e-858.97Putative ATP-dependent RNA helicase eIF4A n=1 Tax=... [more]
UPI0001CB980D1.810e-843.08transcription initiation factor TFIID subunit 7-li... [more]
A0A1X2H2C4_SYNRA1.860e-860.98TAFII55 protein conserved region-domain-containing... [more]
A0A397VEC4_9GLOM1.980e-854.35TAFII55 protein conserved region-domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12081contigE-fasciculatus_F_contig12081:44..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size249
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12081.1628.1prot_E-fasciculatus_F_contig12081.1628.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12081 44..505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927717.3724406-CDS-E-fasciculatus_F_contig12081:43..1111622927717.3724406-CDS-E-fasciculatus_F_contig12081:43..111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 44..111 +
1695995664.1746628-CDS-E-fasciculatus_F_contig12081:43..1111695995664.1746628-CDS-E-fasciculatus_F_contig12081:43..111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 44..111 +
1622927717.390968-CDS-E-fasciculatus_F_contig12081:183..2301622927717.390968-CDS-E-fasciculatus_F_contig12081:183..230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 184..230 +
1695995664.1839128-CDS-E-fasciculatus_F_contig12081:183..2301695995664.1839128-CDS-E-fasciculatus_F_contig12081:183..230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 184..230 +
1622927717.40647-CDS-E-fasciculatus_F_contig12081:374..5051622927717.40647-CDS-E-fasciculatus_F_contig12081:374..505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 375..505 +
1695995664.192814-CDS-E-fasciculatus_F_contig12081:374..5051695995664.192814-CDS-E-fasciculatus_F_contig12081:374..505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12081 375..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12081.1628.1

>prot_E-fasciculatus_F_contig12081.1628.1 ID=prot_E-fasciculatus_F_contig12081.1628.1|Name=mRNA_E-fasciculatus_F_contig12081.1628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=82bp
AGGGGGGGGGTGQGGVYSWLCMPEGVEESVCSLFASRGCSFSPWTGRSTP
PAWWTCRACWKPRRPWTRGPSSRAGTSARCSS
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mRNA from alignment at E-fasciculatus_F_contig12081:44..507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12081.1628.1 ID=mRNA_E-fasciculatus_F_contig12081.1628.1|Name=mRNA_E-fasciculatus_F_contig12081.1628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12081:44..507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGGGGGGGGGGGGGGGGGGGGGGGGGGACAGGGCAGGGAGGGGTGTA
CTCATGGCTGTGCATGCCGTATTCGTTAGACCGCTGACGTCGCATCCGGG
ACGGAACACGCTGGGTTCTCATCGGACCAGGTTCTCACAGGGAGGGCGTG
GAAGAAAGCGTGTGCTCGCTATTTGCTTCTCGCGGTTGTCTTGTTGATGG
TGGGAGCTCTGGCCGACGGCCTTTGAGCCCTATCTGTAATTGTTAAATAT
GTCGATTCTGTTGGCGGTCAGAATGTCCACTCTGTGCAAATCAAGAGAAT
TTTATTTTTCGCGTGTGTGATGATTCGACAGGTTCATTTTCACCATGGAC
GGGAAGAAGTACCCCGCCCGCTTGGTGGACATGCCGTGCGTGTTGGAAAC
CCAGAAGACCCTGGACAAGAGGACCTTCTTCAAGAGCGGGGACGTCGGCC
AGATGCTCATCGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12081:44..507+

>mRNA_E-fasciculatus_F_contig12081.1628.1 ID=mRNA_E-fasciculatus_F_contig12081.1628.1|Name=mRNA_E-fasciculatus_F_contig12081.1628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12081:44..507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGGGGGGGGGGGGGGGGGGGGGGGGGGACAGGGCAGGGAGGGGTGTA
CTCATGGCTGTGCATGCCGCCGGGGGGGGGGGGGGGGGGGGGGGGGGGAC
AGGGCAGGGAGGGGTGTACTCATGGCTGTGCATGCCGGAGGGCGTGGAAG
AAAGCGTGTGCTCGCTATTTGCTTCTCGCGGTTGGAGGGCGTGGAAGAAA
GCGTGTGCTCGCTATTTGCTTCTCGCGGTTGTTCATTTTCACCATGGACG
GGAAGAAGTACCCCGCCCGCTTGGTGGACATGCCGTGCGTGTTGGAAACC
CAGAAGACCCTGGACAAGAGGACCTTCTTCAAGAGCGGGGACGTCGGCCA
GATGCTCATCGGTTCATTTTCACCATGGACGGGAAGAAGTACCCCGCCCG
CTTGGTGGACATGCCGTGCGTGTTGGAAACCCAGAAGACCCTGGACAAGA
GGACCTTCTTCAAGAGCGGGGACGTCGGCCAGATGCTCATCG
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