mRNA_E-fasciculatus_F_contig12073.1619.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12073.1619.1
Unique NamemRNA_E-fasciculatus_F_contig12073.1619.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12073.1619.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.330e-34
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 AIVEPGDLLVAINGKKLTGSSFSFEDAITVCSRATVPRVLRFARMKGASAAEIECAFGADVVCATFDAM 207
            AIVEPGDLLVAINGKKLTGS FSFEDAI VCSRA++PRVLRFARMKGASAAEIECAFGADVVCATFDAM
Sbjct:  137 AIVEPGDLLVAINGKKLTGSRFSFEDAIAVCSRASLPRVLRFARMKGASAAEIECAFGADVVCATFDAM 205
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BLAST of mRNA_E-fasciculatus_F_contig12073.1619.1 vs. uniprot
Match: A0A835Z599_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z599_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.110e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    4 IVEPGDLLVAINGKKLTGSSFSFEDAITVCSRATVPRVLRFARMKGASAAEIECAFGADVVCATFD 201
            +++P DL+VA+NG+ L G++F+FE AI + S A  PR LRFAR+      E+E +      CATFD
Sbjct:  122 VIQPRDLIVAVNGRVLGGAAFTFEKAIAMLSTAPPPRTLRFARIPALDPLEVELSTRV-TPCATFD 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12073.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL1_ECTSI1.330e-3494.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z599_9STRA3.110e-845.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12073contigE-fasciculatus_F_contig12073:1774..2934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-22_002940.1
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.2858307-CDS-E-fasciculatus_F_contig12073:1773..18861622927716.2858307-CDS-E-fasciculatus_F_contig12073:1773..1886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 1774..1886 +
1695995663.682739-CDS-E-fasciculatus_F_contig12073:1773..18861695995663.682739-CDS-E-fasciculatus_F_contig12073:1773..1886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 1774..1886 +
1622927716.3012803-CDS-E-fasciculatus_F_contig12073:2825..29341622927716.3012803-CDS-E-fasciculatus_F_contig12073:2825..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 2826..2934 +
1695995663.6903229-CDS-E-fasciculatus_F_contig12073:2825..29341695995663.6903229-CDS-E-fasciculatus_F_contig12073:2825..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12073 2826..2934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12073.1619.1prot_E-fasciculatus_F_contig12073.1619.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12073 1774..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12073.1619.1

>prot_E-fasciculatus_F_contig12073.1619.1 ID=prot_E-fasciculatus_F_contig12073.1619.1|Name=mRNA_E-fasciculatus_F_contig12073.1619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
AIVEPGDLLVAINGKKLTGSSFSFEDAITVCSRATVPRVLRFARMKGASA
AEIECAFGADVVCATFDAMVSGV*
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mRNA from alignment at E-fasciculatus_F_contig12073:1774..2934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12073.1619.1 ID=mRNA_E-fasciculatus_F_contig12073.1619.1|Name=mRNA_E-fasciculatus_F_contig12073.1619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1161bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12073:1774..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGATCGTTGAACCGGGAGACCTCCTTGTGGCCATCAACGGCAAGAAGCT
CACCGGAAGCAGCTTCAGCTTCGAGGACGCCATCACTGTCTGCAGCAGAG
CGACCGTGCCAAGGTAGGTGTGTCTAAGGGAGGCGGGAGGCGTATTGGCT
GTGCTGAATCACCCAACCTCGACGCCTTGCTCACCCTTGTGAAACCTAGC
CTGGGCTGGCGAAAACCCGAAAGGCATATCGCTTCGTCCCGGCATTGTAG
GGATGCAAGGTACCAATGGCCTAGCGACTACTGTATGGCATGCGTTTACA
TGAGTACACCCACCCTTCCGAAGAAGTCCGTACGGTTTCATTCTTTTTCT
CTGTTTTTTCATGTCGAACAACATCTAATAACATGTCGTTACATCTAATA
ATAGTCTGTCTCGAAGCCGGAGATTTCCATCCACTGGAAATATCAAATAA
AGTCACCGGGCGTCTTTTATTTTGTGGACGTTGGTCCTTTCACCTTTCGG
AACAATTTCTGGACGCACGAGCCGGGGTCATACAGACAGGGAGCAGGGGT
CATACAGACAGGGAGCAGGGATCATACAGACAGAGAGCAGGTGTTTTTTA
TCCCCCTTCCTTTTGCGGTGCTTGCCTTGGGATAGTGTTAGGGGGTTGGT
GTTACCGTATGCAGCGGGGGAAATACACTAGGGTGGGTTCAGCTTTGATC
GTGGGAGCGGTGGAGCAATCCCCTCTCCCGCTCTTCCATATGTCGTCTCG
TGTCGGATTATGCATGGCACTCGCGTGCCGTTGGAGAGTGCAAGAGTGCA
GGTTAGTCTTTGCCGCGGGTATGCAGTCGCACGAAGGACAGCAGTATTAG
TGGTCTCGTTACTCTGCTTGAACGTGCGTCGGCTGGAGTTGAAGATATTT
TTGTTGTCTCTTCACGGCACGATTTCAGTGTTCAAAGTTGTAAGACTGTC
GGCGGGTCAAACAGATTGTAGCATGGCTCGAATGACTATCAACGCGGGTA
ACCATGGTTCCTCTACAACATTTTTTTTGTGCAATGCCGTGTGGCCTGTC
AGGGTTCTCCGATTTGCCCGCATGAAGGGTGCTTCCGCTGCGGAGATCGA
GTGCGCTTTCGGGGCTGATGTGGTGTGTGCTACGTTCGACGCCATGGTGA
GTGGAGTGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12073:1774..2934+

>mRNA_E-fasciculatus_F_contig12073.1619.1 ID=mRNA_E-fasciculatus_F_contig12073.1619.1|Name=mRNA_E-fasciculatus_F_contig12073.1619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12073:1774..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGATCGTTGAACCGGGAGACCTCCTTGTGGCCATCAACGGCAAGAAGCT
CACCGGAAGCAGCTTCAGCTTCGAGGACGCCATCACTGTCTGCAGCAGAG
CGACCGTGCCAAGGCGATCGTTGAACCGGGAGACCTCCTTGTGGCCATCA
ACGGCAAGAAGCTCACCGGAAGCAGCTTCAGCTTCGAGGACGCCATCACT
GTCTGCAGCAGAGCGACCGTGCCAAGGGTTCTCCGATTTGCCCGCATGAA
GGGTGCTTCCGCTGCGGAGATCGAGTGCGCTTTCGGGGCTGATGTGGTGT
GTGCTACGTTCGACGCCATGGTGAGTGGAGTGTAAGGTTCTCCGATTTGC
CCGCATGAAGGGTGCTTCCGCTGCGGAGATCGAGTGCGCTTTCGGGGCTG
ATGTGGTGTGTGCTACGTTCGACGCCATGGTGAGTGGAGTGTAA
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