mRNA_E-fasciculatus_F_contig12070.1616.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12070.1616.1
Unique NamemRNA_E-fasciculatus_F_contig12070.1616.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12070.1616.1 vs. uniprot
Match: A0A6H5K2Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z8_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 5.710e-91
Identity = 167/233 (71.67%), Postives = 181/233 (77.68%), Query Frame = 1 
Query:   97 MPYGVIVTQSILCSSGAPREASNHQLPHTGSSNTIDHAEIPRRKGSGKPASHNSSS--HGNERAASGRTFAGVMRALLKPSSXXXXXXXXXXXXXXXXXXVPAGRTGGVAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKTSRTRSMNNLGGSSNPNVKTKDSWWEKQESDESWLSRVSSTSTIPASPPELAQQXXXXXXXXXRQPGPICHARSFGDLDEMSLAVGLQ 789
            MPYGVIVTQSILCSS APREA +H+L H   SN+ID A+IPRRKG+ KP+   SSS  H NERAASG+TFAGV+RALLKPSS                   P GR+G VAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALK S+TRSMNNLG SS+ N+  KDSWWEKQES+ESW SRVSSTSTIPASPPEL QQ         R+PGP CHARSFGDLDEMSLAVGLQ
Sbjct:    1 MPYGVIVTQSILCSS-APREA-DHELQHA--SNSIDRADIPRRKGN-KPSHTGSSSRSHENERAASGKTFAGVLRALLKPSSSPADASAGSGDEGDGEAP-PVGRSG-VAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKKSKTRSMNNLGSSSSSNLAVKDSWWEKQESEESWFSRVSSTSTIPASPPELHQQHQQQ-----RKPGPGCHARSFGDLDEMSLAVGLQ 221
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BLAST of mRNA_E-fasciculatus_F_contig12070.1616.1 vs. uniprot
Match: D8LRG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG6_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 8.990e-56
Identity = 134/236 (56.78%), Postives = 144/236 (61.02%), Query Frame = 1 
Query:   97 MPYGVIVTQSILCSSGAPREASNHQLPHTGSSNTIDHAEIPRRKG-----SGKPASHNSSSHGNERAASGRTFAGVMRALLKPSSXXXXXXXXXXXXXXXXXXVPAGRTGGVAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKTSRTRSMNNLGGSSNPNVKTKDSWWEKQESDESWLSRVSSTSTIPASPPELAQQXXXXXXXXXRQPGPICHARSFGDLDEMSLAVGLQ 789
            MPYGVIVTQSILCSS      +NH+      SN+I+HA+IPRRKG     SG         HGN+RAASGRTFAGV+RALLK SS                   P GR+G VAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKTSRTRSMNNLG                                           XXXXXXXXXR+ GP+CHARSFGDLDEMSLAVGLQ
Sbjct:    1 MPYGVIVTQSILCSSALE---ANHE------SNSINHADIPRRKGNKPGHSGSXXXXXXXXHGNDRAASGRTFAGVLRALLKTSSSPADASAGSGDEGEEGEAPPVGRSG-VAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKTSRTRSMNNLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAGPVCHARSFGDLDEMSLAVGLQ 226
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12070.1616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Z8_9PHAE5.710e-9171.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRG6_ECTSI8.990e-5656.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12070contigE-fasciculatus_F_contig12070:866..3361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004460.1
Exons3
Model size792
Cds size792
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12070.1616.1prot_E-fasciculatus_F_contig12070.1616.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12070 866..3361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.9688141-CDS-E-fasciculatus_F_contig12070:865..9881622927715.9688141-CDS-E-fasciculatus_F_contig12070:865..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 866..988 +
1695995663.5664737-CDS-E-fasciculatus_F_contig12070:865..9881695995663.5664737-CDS-E-fasciculatus_F_contig12070:865..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 866..988 +
1622927715.982035-CDS-E-fasciculatus_F_contig12070:1917..22771622927715.982035-CDS-E-fasciculatus_F_contig12070:1917..2277Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 1918..2277 +
1695995663.576475-CDS-E-fasciculatus_F_contig12070:1917..22771695995663.576475-CDS-E-fasciculatus_F_contig12070:1917..2277Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 1918..2277 +
1622927715.9976084-CDS-E-fasciculatus_F_contig12070:3052..33611622927715.9976084-CDS-E-fasciculatus_F_contig12070:3052..3361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 3053..3361 +
1695995663.585921-CDS-E-fasciculatus_F_contig12070:3052..33611695995663.585921-CDS-E-fasciculatus_F_contig12070:3052..3361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12070 3053..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12070.1616.1

>prot_E-fasciculatus_F_contig12070.1616.1 ID=prot_E-fasciculatus_F_contig12070.1616.1|Name=mRNA_E-fasciculatus_F_contig12070.1616.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=264bp
LNTAPFVGTHRVCHPTLALLKPLEPTVASVASMPYGVIVTQSILCSSGAP
REASNHQLPHTGSSNTIDHAEIPRRKGSGKPASHNSSSHGNERAASGRTF
AGVMRALLKPSSPSAAAASGSGGEGGEEGEVPAGRTGGVAGGWQPRTALD
LSGHSFSKALKAEINRSKEKKMALKTSRTRSMNNLGGSSNPNVKTKDSWW
EKQESDESWLSRVSSTSTIPASPPELAQQRQQQRQQQQRQPGPICHARSF
GDLDEMSLAVGLQ*
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mRNA from alignment at E-fasciculatus_F_contig12070:866..3361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12070.1616.1 ID=mRNA_E-fasciculatus_F_contig12070.1616.1|Name=mRNA_E-fasciculatus_F_contig12070.1616.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2496bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12070:866..3361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCAACACCGCTCCCTTCGTTGGAACGCATCGCGTGTGCCACCCCACTTT
GGCGTTGTTGAAGCCCCTGGAGCCAACAGTAGCCAGCGTCGCAAGCATGC
CGTACGGGGTGATCGTCACACAGGTAAGAGAGAGCTTTTTGGGCACAAAA
GGGCGACGTGTATCCATCCGGCTTTCAAATTCGTGGTTTTTGGTTGAGAT
CACAATTAGGCGCCCGGGTGTTAGCACCTCACTCCCTACGCCATGGCACT
CGAGCCATGCGGTAAAAGGGACACGGCACAGCTAGTGAGGGACTTGGTAT
GGAGAAGGCGCAATGTTGTATTCTACATGGCGAAAACAATGCGCCCGTGT
GGTGGACACGATCCATTGCGAAGAGAGCGGCCCATTTTTTTGCCGGAATA
TGTCGTTTTCGATTCCTGAGACCCACGTCGCCCTAATGCGCTCTTCCCTA
GGCTTCTCTCCCTGCTGTTGCTCACGGCGCGCGCTAATCCACAGCGTGGG
AGTTACAAGGCCTGTGCCTGCACCCACGGGTGAAGGTCGTTTGTAGCAGC
AGCGGTTCTCGGGGGAGGCCGAGTGCCGTATTGTGAGGTGTACGTTGTTG
ATGTTCGTTCGTGTCCGAAGGGAAAACGTGCCGCCTCAACGCTACGGAAG
GGCTCAACTGCATGCGTTCCGTCAATTTCCGCCACGCCGCGCCGCTCGCA
GCTGTGGTCGATACCGAACATATCACGCGCTGCCTGCACGCCCGTGCGTT
CTCCGGACTTGCAGGCAGCGTTGCACGCGACCATGAGATCCGCATTCAGT
GTGTTCCAGGCCCTTGAAAACTGCAAAAATCGCACACGTGTGGTGTTTTT
TGTGTTTTTCGTGGGGTTGGCAAGGGGTATCTTTTGCATCGCCTCTCGTG
TCATCATGACACCGAACAATACCCCTGCCGCGCCGTTATCGTGCGCTTCC
CGCCACGCTTACTCCCGTTCCAGTCTATCTCGCTCCTCGTCATCTCACCA
ACGCCGCTGCGCGCACCTCTCCCCCCGTTGATTTTCACTGTCTGTTCACC
AGAGCATCCTGTGCAGCAGCGGTGCCCCACGAGAAGCAAGCAACCACCAG
TTGCCGCACACCGGAAGCAGCAACACCATCGACCACGCCGAGATTCCCCG
ACGAAAAGGCAGCGGCAAGCCCGCCAGCCACAACAGCAGCAGCCACGGAA
ACGAAAGGGCGGCCTCAGGCAGGACGTTCGCGGGAGTCATGCGAGCCCTC
TTGAAGCCGTCGTCACCGTCCGCCGCTGCTGCGTCCGGGAGCGGCGGTGA
GGGCGGCGAGGAAGGGGAAGTGCCAGCAGGCCGGACTGGCGGTGTTGCCG
GAGGCTGGCAGCCGAGGACGGCGCTGGACCTGAGCGGGCACTCGTTTTCG
AAGGCGTTGAAGGTGATGATGAGGAGGGATTATTTTGCCTCTTGTCTTGC
ACGCGCATGGCGGCAATCGCTGCCGCTCTCGATACCAGCATGACGTCATC
GAATGCCGCGACTGCTGGGGTGCTGCCGCTGCTACATTAGAGCCGGTTTA
TTTACAGCTTCAACGTTCGCGTGGGATGCACAACGCTCGCCCTCGAAGAC
ATATGGTTTAAACATAGATACGGCGGTACATTTTCCTTGCATAAAATACG
GCTGCTGTATGCATTGATGTAGCCTACCGCGAGGTGAACGATTACGCTGC
TGTGGTCGTTTTTTCTCGTTCAACAACGCACGTGAGGGACTGTGAACCAG
CCCTGTTTGTGTAATATCACTCGCTATTATGGAGTCACGTCTTGGTCCGT
GGTGTTCCTGCGCGTCTGAATAGCCGCGTGCGTACGAAAAAGCTCATCAA
CAGCGCATTTGAGAATGCATGGGAGGGAAAAAATTGGGAAAAATCCAACG
TGTCTCTTGTCTCGCACTCGTCGTCTGGCGCAGCCTAAACTTCAACTTGG
ACATTTTTTACCGTCCGCTTTTGTACTGGTCTGGTGAAACATCGAACGCT
GCTCCTAAAGGTTCCAAGCGGAAAAAAACTCCGGGAGCAAACCGTCTCGC
CCCTCCCTCGCTCTCTCTCCACTCTCTACGCTACTTCAACCGCCGTGCTT
CAATATTAACCTACATGCATTTGAACCGCCGCACTTTAACCCCCTTCCCC
CATTGGCCCAAACCCACTCCTCTCTCCTCGTGTTCAGGCGGAGATCAACC
GATCGAAGGAGAAGAAGATGGCTCTCAAAACCAGCAGGACCAGGAGCATG
AACAACTTGGGCGGCAGCAGCAACCCCAACGTTAAGACTAAGGACTCCTG
GTGGGAAAAGCAAGAGTCAGACGAGTCCTGGCTCTCTCGCGTGTCGTCCA
CTTCAACCATCCCCGCCTCCCCGCCAGAGCTGGCGCAGCAGCGGCAGCAG
CAGCGGCAGCAGCAGCAGCGGCAGCCCGGTCCAATCTGCCACGCGCGGTC
TTTCGGAGACTTGGACGAGATGTCGCTGGCTGTGGGGCTTCAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12070:866..3361+

>mRNA_E-fasciculatus_F_contig12070.1616.1 ID=mRNA_E-fasciculatus_F_contig12070.1616.1|Name=mRNA_E-fasciculatus_F_contig12070.1616.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12070:866..3361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCAACACCGCTCCCTTCGTTGGAACGCATCGCGTGTGCCACCCCACTTT
GGCGTTGTTGAAGCCCCTGGAGCCAACAGTAGCCAGCGTCGCAAGCATGC
CGTACGGGGTGATCGTCACACAGCTCAACACCGCTCCCTTCGTTGGAACG
CATCGCGTGTGCCACCCCACTTTGGCGTTGTTGAAGCCCCTGGAGCCAAC
AGTAGCCAGCGTCGCAAGCATGCCGTACGGGGTGATCGTCACACAGAGCA
TCCTGTGCAGCAGCGGTGCCCCACGAGAAGCAAGCAACCACCAGTTGCCG
CACACCGGAAGCAGCAACACCATCGACCACGCCGAGATTCCCCGACGAAA
AGGCAGCGGCAAGCCCGCCAGCCACAACAGCAGCAGCCACGGAAACGAAA
GGGCGGCCTCAGGCAGGACGTTCGCGGGAGTCATGCGAGCCCTCTTGAAG
CCGTCGTCACCGTCCGCCGCTGCTGCGTCCGGGAGCGGCGGTGAGGGCGG
CGAGGAAGGGGAAGTGCCAGCAGGCCGGACTGGCGGTGTTGCCGGAGGCT
GGCAGCCGAGGACGGCGCTGGACCTGAGCGGGCACTCGTTTTCGAAGGCG
TTGAAGAGCATCCTGTGCAGCAGCGGTGCCCCACGAGAAGCAAGCAACCA
CCAGTTGCCGCACACCGGAAGCAGCAACACCATCGACCACGCCGAGATTC
CCCGACGAAAAGGCAGCGGCAAGCCCGCCAGCCACAACAGCAGCAGCCAC
GGAAACGAAAGGGCGGCCTCAGGCAGGACGTTCGCGGGAGTCATGCGAGC
CCTCTTGAAGCCGTCGTCACCGTCCGCCGCTGCTGCGTCCGGGAGCGGCG
GTGAGGGCGGCGAGGAAGGGGAAGTGCCAGCAGGCCGGACTGGCGGTGTT
GCCGGAGGCTGGCAGCCGAGGACGGCGCTGGACCTGAGCGGGCACTCGTT
TTCGAAGGCGTTGAAGGCGGAGATCAACCGATCGAAGGAGAAGAAGATGG
CTCTCAAAACCAGCAGGACCAGGAGCATGAACAACTTGGGCGGCAGCAGC
AACCCCAACGTTAAGACTAAGGACTCCTGGTGGGAAAAGCAAGAGTCAGA
CGAGTCCTGGCTCTCTCGCGTGTCGTCCACTTCAACCATCCCCGCCTCCC
CGCCAGAGCTGGCGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGCGG
CAGCCCGGTCCAATCTGCCACGCGCGGTCTTTCGGAGACTTGGACGAGAT
GTCGCTGGCTGTGGGGCTTCAGTGAGCGGAGATCAACCGATCGAAGGAGA
AGAAGATGGCTCTCAAAACCAGCAGGACCAGGAGCATGAACAACTTGGGC
GGCAGCAGCAACCCCAACGTTAAGACTAAGGACTCCTGGTGGGAAAAGCA
AGAGTCAGACGAGTCCTGGCTCTCTCGCGTGTCGTCCACTTCAACCATCC
CCGCCTCCCCGCCAGAGCTGGCGCAGCAGCGGCAGCAGCAGCGGCAGCAG
CAGCAGCGGCAGCCCGGTCCAATCTGCCACGCGCGGTCTTTCGGAGACTT
GGACGAGATGTCGCTGGCTGTGGGGCTTCAGTGA
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