mRNA_E-fasciculatus_F_contig12066.1612.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12066.1612.1
Unique NamemRNA_E-fasciculatus_F_contig12066.1612.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12066.1612.1 vs. uniprot
Match: A0A6H5L9D3_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D3_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.500e-103
Identity = 182/247 (73.68%), Postives = 193/247 (78.14%), Query Frame = 1 
Query:    1 MRRLDEGVKAFQRQEAVHGIAPLVFWGEGGVLLPVVPPAQVEARTAPPAIDSNSTDGAMELEREVERQLEEAGKLMRQQNLHLVTAVAVSSHALLRPADVYPPLFHASGNQDDAPASQHTTANALLRPDAFAGAFQPQEEGKADSAPSGFSSRPFAPPLFHTNGNQDDAPALQHTTATALLRPDTFAGASQSQEEGNVDSAPPDFSSRPFAPPLSDTNGNQDDAPALQHTTATALLRPDAFAGVLQS 741
            MRRLD+GVKAFQRQE   G+APLVFWGEGGVLLPVVPPAQV+ART+PPA  SNSTD A+E EREVERQLEEAGKL+RQQN HLVTAVAV S  LLRP  VYPPLFH + +QDDAP SQH    ALLRPDAFAG F+ QEEG  DSAP G S R F PP F TNG+QDDAPA QH  ATALLRPD F GA Q QEE N DSAPP  S R F P L  TNG QDDAPA QHTTATALL  +AFAG  QS
Sbjct:  804 MRRLDDGVKAFQRQENKQGVAPLVFWGEGGVLLPVVPPAQVDARTSPPA--SNSTDDAIEWEREVERQLEEAGKLLRQQNFHLVTAVAVGSCTLLRPGKVYPPLFHTNDHQDDAPTSQHAVTTALLRPDAFAGTFRSQEEGNTDSAPPGLSRRGFYPPPFDTNGSQDDAPASQHA-ATALLRPDAFTGAFQCQEEVNADSAPPGSSRRTFYPLLFHTNGRQDDAPASQHTTATALLGSNAFAGAFQS 1047
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BLAST of mRNA_E-fasciculatus_F_contig12066.1612.1 vs. uniprot
Match: D7FHG2_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG2_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 2.700e-93
Identity = 156/192 (81.25%), Postives = 166/192 (86.46%), Query Frame = 1 
Query:    1 MRRLDEGVKAFQRQEAVHGIAPLVFWGEGGVLLPVVPPAQVEARTAPPAIDSNSTDGAMELEREVERQLEEAGKLMRQQNLHLVTAVAVSSHALLRPADVYPPLFHASGNQDDAPASQHTTANALLRPDAFAGAFQPQEEGKADSAPSGFSSRPFAPPLFHTNGNQDDAPALQHTTATALLRPDTFAGASQS 576
            MRRLD+GVKAFQRQE   G+APLVFWGEGGVLLPVVPPAQV+ART+PPA+DSNSTD  +E +REVERQLEEAGKL+RQQNLHLVTAVAV SHALLRP DVYPPLFH +GNQDDAPASQH    ALLRPDAF GAFQ QEEG ADSAP G S R F P LFHTNG+QDDAPA QHTTATALLRPD FAG  QS
Sbjct:  745 MRRLDDGVKAFQRQEKRQGVAPLVFWGEGGVLLPVVPPAQVDARTSPPAVDSNSTDDTIEWKREVERQLEEAGKLLRQQNLHLVTAVAVGSHALLRPEDVYPPLFHTNGNQDDAPASQHAATTALLRPDAFTGAFQCQEEGNADSAPPGSSRRTFYPLLFHTNGSQDDAPASQHTTATALLRPDAFAGEFQS 936
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BLAST of mRNA_E-fasciculatus_F_contig12066.1612.1 vs. uniprot
Match: A0A6H5JNX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.490e-55
Identity = 106/136 (77.94%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    1 MRRLDEGVKAFQRQEAVHGIAPLVFWGEGGVLLPVVPPAQVEARTAPPAIDSNSTDGAMELEREVERQLEEAGKLMRQQNLHLVTAVAVSSHALLRPADVYPPLFHASGNQDDAPASQHTTANALLRPDAFAGAFQ 408
            MRRLD+GVKAFQRQE   G+APLVF G GGVLLP VPPA+V+ART+PPA+DSNSTD  +E E EVE QLEEAGKL+RQQNL LVTAVAV S  LLRP +VYPPLFHA+GNQDDA ASQHTTA ALL PD FAGAFQ
Sbjct:  721 MRRLDDGVKAFQRQEKKQGVAPLVFCGGGGVLLPAVPPAEVDARTSPPAVDSNSTDDTIEWEHEVEPQLEEAGKLLRQQNLRLVTAVAVGSCTLLRPGNVYPPLFHANGNQDDATASQHTTAIALLGPDVFAGAFQ 856
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12066.1612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9D3_9PHAE1.500e-10373.68Cyclin N-terminal domain-containing protein n=1 Ta... [more]
D7FHG2_ECTSI2.700e-9381.25Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JNX6_9PHAE1.490e-5577.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12066contigE-fasciculatus_F_contig12066:3188..4093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size906
Cds size906
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.1387544-CDS-E-fasciculatus_F_contig12066:3187..40931622927715.1387544-CDS-E-fasciculatus_F_contig12066:3187..4093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12066 3188..4093 -
1695995663.3034115-CDS-E-fasciculatus_F_contig12066:3187..40931695995663.3034115-CDS-E-fasciculatus_F_contig12066:3187..4093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12066 3188..4093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12066.1612.1prot_E-fasciculatus_F_contig12066.1612.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12066 3188..4093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12066.1612.1

>prot_E-fasciculatus_F_contig12066.1612.1 ID=prot_E-fasciculatus_F_contig12066.1612.1|Name=mRNA_E-fasciculatus_F_contig12066.1612.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=302bp
MRRLDEGVKAFQRQEAVHGIAPLVFWGEGGVLLPVVPPAQVEARTAPPAI
DSNSTDGAMELEREVERQLEEAGKLMRQQNLHLVTAVAVSSHALLRPADV
YPPLFHASGNQDDAPASQHTTANALLRPDAFAGAFQPQEEGKADSAPSGF
SSRPFAPPLFHTNGNQDDAPALQHTTATALLRPDTFAGASQSQEEGNVDS
APPDFSSRPFAPPLSDTNGNQDDAPALQHTTATALLRPDAFAGVLQSQEE
GNADSAPSGFSRRTFYPLLFDTNGSQDDAPASQHTTATALLRPDAFAGAF
RS
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mRNA from alignment at E-fasciculatus_F_contig12066:3188..4093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12066.1612.1 ID=mRNA_E-fasciculatus_F_contig12066.1612.1|Name=mRNA_E-fasciculatus_F_contig12066.1612.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12066:3188..4093- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCAGGCTGGACGAAGGCGTCAAGGCGTTCCAGCGGCAAGAAGCGGT
GCATGGCATCGCGCCGCTGGTGTTCTGGGGGGAAGGTGGTGTGCTTCTGC
CCGTGGTCCCACCCGCTCAGGTCGAGGCACGCACAGCCCCCCCCGCTATC
GACAGCAACAGTACCGATGGTGCCATGGAGCTGGAGCGTGAGGTCGAACG
CCAACTCGAAGAAGCCGGTAAGCTCATGCGGCAACAGAACCTTCACCTGG
TGACGGCAGTAGCCGTGAGCAGCCACGCACTTCTGCGGCCGGCGGATGTT
TACCCGCCGCTCTTCCACGCTAGCGGCAACCAGGACGACGCCCCGGCTTC
GCAGCACACCACCGCCAACGCGTTGCTCAGGCCGGATGCATTCGCGGGCG
CGTTCCAGCCCCAGGAGGAAGGAAAAGCGGACTCCGCGCCATCGGGCTTC
TCCAGTCGGCCGTTTGCCCCGCCGCTCTTCCACACCAACGGCAACCAGGA
CGACGCCCCGGCCTTGCAGCACACCACCGCCACCGCGTTGCTCAGGCCGG
ATACATTCGCGGGCGCGTCACAGTCCCAGGAGGAAGGAAACGTGGACTCC
GCGCCACCGGATTTCTCCAGTCGGCCGTTTGCCCCGCCGCTCTCCGACAC
CAACGGCAACCAGGACGACGCCCCGGCCTTGCAGCACACCACCGCCACCG
CGCTGCTCAGGCCAGATGCATTCGCGGGCGTGTTGCAGTCCCAGGAGGAA
GGAAACGCGGACTCCGCGCCATCGGGCTTCTCCAGGAGAACCTTCTACCC
GCTGCTCTTCGACACCAACGGGAGCCAGGACGACGCCCCGGCTTCGCAAC
ACACCACCGCCACCGCGCTGCTCAGGCCGGATGCATTTGCGGGCGCATTC
CGGTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12066:3188..4093-

>mRNA_E-fasciculatus_F_contig12066.1612.1 ID=mRNA_E-fasciculatus_F_contig12066.1612.1|Name=mRNA_E-fasciculatus_F_contig12066.1612.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12066:3188..4093- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCAGGCTGGACGAAGGCGTCAAGGCGTTCCAGCGGCAAGAAGCGGT
GCATGGCATCGCGCCGCTGGTGTTCTGGGGGGAAGGTGGTGTGCTTCTGC
CCGTGGTCCCACCCGCTCAGGTCGAGGCACGCACAGCCCCCCCCGCTATC
GACAGCAACAGTACCGATGGTGCCATGGAGCTGGAGCGTGAGGTCGAACG
CCAACTCGAAGAAGCCGGTAAGCTCATGCGGCAACAGAACCTTCACCTGG
TGACGGCAGTAGCCGTGAGCAGCCACGCACTTCTGCGGCCGGCGGATGTT
TACCCGCCGCTCTTCCACGCTAGCGGCAACCAGGACGACGCCCCGGCTTC
GCAGCACACCACCGCCAACGCGTTGCTCAGGCCGGATGCATTCGCGGGCG
CGTTCCAGCCCCAGGAGGAAGGAAAAGCGGACTCCGCGCCATCGGGCTTC
TCCAGTCGGCCGTTTGCCCCGCCGCTCTTCCACACCAACGGCAACCAGGA
CGACGCCCCGGCCTTGCAGCACACCACCGCCACCGCGTTGCTCAGGCCGG
ATACATTCGCGGGCGCGTCACAGTCCCAGGAGGAAGGAAACGTGGACTCC
GCGCCACCGGATTTCTCCAGTCGGCCGTTTGCCCCGCCGCTCTCCGACAC
CAACGGCAACCAGGACGACGCCCCGGCCTTGCAGCACACCACCGCCACCG
CGCTGCTCAGGCCAGATGCATTCGCGGGCGTGTTGCAGTCCCAGGAGGAA
GGAAACGCGGACTCCGCGCCATCGGGCTTCTCCAGGAGAACCTTCTACCC
GCTGCTCTTCGACACCAACGGGAGCCAGGACGACGCCCCGGCTTCGCAAC
ACACCACCGCCACCGCGCTGCTCAGGCCGGATGCATTTGCGGGCGCATTC
CGGTCCATGCGCAGGCTGGACGAAGGCGTCAAGGCGTTCCAGCGGCAAGA
AGCGGTGCATGGCATCGCGCCGCTGGTGTTCTGGGGGGAAGGTGGTGTGC
TTCTGCCCGTGGTCCCACCCGCTCAGGTCGAGGCACGCACAGCCCCCCCC
GCTATCGACAGCAACAGTACCGATGGTGCCATGGAGCTGGAGCGTGAGGT
CGAACGCCAACTCGAAGAAGCCGGTAAGCTCATGCGGCAACAGAACCTTC
ACCTGGTGACGGCAGTAGCCGTGAGCAGCCACGCACTTCTGCGGCCGGCG
GATGTTTACCCGCCGCTCTTCCACGCTAGCGGCAACCAGGACGACGCCCC
GGCTTCGCAGCACACCACCGCCAACGCGTTGCTCAGGCCGGATGCATTCG
CGGGCGCGTTCCAGCCCCAGGAGGAAGGAAAAGCGGACTCCGCGCCATCG
GGCTTCTCCAGTCGGCCGTTTGCCCCGCCGCTCTTCCACACCAACGGCAA
CCAGGACGACGCCCCGGCCTTGCAGCACACCACCGCCACCGCGTTGCTCA
GGCCGGATACATTCGCGGGCGCGTCACAGTCCCAGGAGGAAGGAAACGTG
GACTCCGCGCCACCGGATTTCTCCAGTCGGCCGTTTGCCCCGCCGCTCTC
CGACACCAACGGCAACCAGGACGACGCCCCGGCCTTGCAGCACACCACCG
CCACCGCGCTGCTCAGGCCAGATGCATTCGCGGGCGTGTTGCAGTCCCAG
GAGGAAGGAAACGCGGACTCCGCGCCATCGGGCTTCTCCAGGAGAACCTT
CTACCCGCTGCTCTTCGACACCAACGGGAGCCAGGACGACGCCCCGGCTT
CGCAACACACCACCGCCACCGCGCTGCTCAGGCCGGATGCATTTGCGGGC
GCATTCCGGTCC
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