mRNA_E-fasciculatus_F_contig1206.1607.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1206.1607.1
Unique NamemRNA_E-fasciculatus_F_contig1206.1607.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1206.1607.1 vs. uniprot
Match: D7FGQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGQ0_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.790e-114
Identity = 204/239 (85.36%), Postives = 204/239 (85.36%), Query Frame = 1 
Query:  136 MPKRRSFAMVACTTXXXXXXXXXXXXXXXXXXXXXVSPPATALHSSSA-VGRSRGHVSQFQPGSGSFGYKVGLERRGAPAQLLSRTQRRPSRRSQATAMVFGXXXXXXXXXXGFRLDPGTIATIGFGLLFVFAPGVIFGAFNTLFLTITVGPILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDGKFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD 849
            MPKRRSFAMVACTT                      SPPA ALHSS   VGRSRGHVSQFQPGS   GYKVGLERR APA  LSR  RR SRRSQATAMVFGXXXXXXXXXXGFRLDPGTIATIGFGLLFVFAPGVIFGAFNTLFLTITVGPILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDGKFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD
Sbjct:    1 MPKRRSFAMVACTTAVAALMSMQSSTAFVPTTTL-ASPPA-ALHSSRIPVGRSRGHVSQFQPGSDPIGYKVGLERR-APALPLSRAGRRSSRRSQATAMVFGXXXXXXXXXXGFRLDPGTIATIGFGLLFVFAPGVIFGAFNTLFLTITVGPILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDGKFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1206.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGQ0_ECTSI1.790e-11485.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1206contigE-fasciculatus_F_contig1206:7313..11504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.8
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog197221.22295399
KEGG rclassRC00613
KEGG koko:K00525
KEGG ReactionR02017,R02018,R02019,R02024
KEGG Pathwayko00230,ko00240,ko01100,map00230,map00240,map01100
KEGG ModuleM00053
EggNOG free text desc.bacterial-type flagellum-dependent swarming motility
EggNOG OGs1GHBI@1117,COG1645@1,COG1645@2
EC1.17.4.1
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001300.1
Exons3
Model size1701
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1206.1607.1prot_E-fasciculatus_F_contig1206.1607.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1206 7448..10655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.6335752-UTR-E-fasciculatus_F_contig1206:7312..74471622927714.6335752-UTR-E-fasciculatus_F_contig1206:7312..7447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1206 7313..7447 +
1695995663.0686967-UTR-E-fasciculatus_F_contig1206:7312..74471695995663.0686967-UTR-E-fasciculatus_F_contig1206:7312..7447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1206 7313..7447 +
1622927714.6936536-UTR-E-fasciculatus_F_contig1206:10655..115041622927714.6936536-UTR-E-fasciculatus_F_contig1206:10655..11504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1206 10656..11504 +
1695995663.1079898-UTR-E-fasciculatus_F_contig1206:10655..115041695995663.1079898-UTR-E-fasciculatus_F_contig1206:10655..11504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1206 10656..11504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.6452093-CDS-E-fasciculatus_F_contig1206:7447..78821622927714.6452093-CDS-E-fasciculatus_F_contig1206:7447..7882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 7448..7882 +
1695995663.0798419-CDS-E-fasciculatus_F_contig1206:7447..78821695995663.0798419-CDS-E-fasciculatus_F_contig1206:7447..7882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 7448..7882 +
1622927714.6619375-CDS-E-fasciculatus_F_contig1206:9353..94871622927714.6619375-CDS-E-fasciculatus_F_contig1206:9353..9487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 9354..9487 +
1695995663.0896885-CDS-E-fasciculatus_F_contig1206:9353..94871695995663.0896885-CDS-E-fasciculatus_F_contig1206:9353..9487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 9354..9487 +
1622927714.6808524-CDS-E-fasciculatus_F_contig1206:10507..106551622927714.6808524-CDS-E-fasciculatus_F_contig1206:10507..10655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 10508..10655 +
1695995663.099541-CDS-E-fasciculatus_F_contig1206:10507..106551695995663.099541-CDS-E-fasciculatus_F_contig1206:10507..10655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1206 10508..10655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1206.1607.1

>prot_E-fasciculatus_F_contig1206.1607.1 ID=prot_E-fasciculatus_F_contig1206.1607.1|Name=mRNA_E-fasciculatus_F_contig1206.1607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
MPKRRSFAMVACTTAAAALMSMQSSTAFVPPTTTLVSPPATALHSSSAVG
RSRGHVSQFQPGSGSFGYKVGLERRGAPAQLLSRTQRRPSRRSQATAMVF
GGGGGGGRGGGGFRLDPGTIATIGFGLLFVFAPGVIFGAFNTLFLTITVG
PILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDG
KFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD*
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mRNA from alignment at E-fasciculatus_F_contig1206:7313..11504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1206.1607.1 ID=mRNA_E-fasciculatus_F_contig1206.1607.1|Name=mRNA_E-fasciculatus_F_contig1206.1607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:7313..11504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAGGGCGCCACACTCGCGGCTCGTGCAGGCACGTGTCACACACACAGA
CACCACACCTCCCCGCCAGCAGCACTCCAGGGTGCACCCTGAGCTCTCCA
GAGCAAATACTACAACGCAGACCTGATCTCGAGCCATGCCGAAGAGGAGA
AGCTTCGCCATGGTGGCGTGCACCACGGCCGCTGCTGCGCTGATGTCAAT
GCAATCAAGCACGGCCTTCGTACCACCGACCACCACGCTCGTGTCCCCGC
CGGCCACCGCGTTGCATAGCAGCAGCGCAGTAGGCAGGAGTCGTGGCCAC
GTATCGCAGTTCCAGCCTGGCTCGGGGTCCTTCGGCTACAAGGTCGGGTT
GGAGAGGAGAGGAGCGCCAGCACAACTGCTGTCCCGCACGCAGCGGCGGC
CGAGCAGACGGAGCCAGGCAACAGCCATGGTGTTTGGCGGGGGCGGGGGC
GGTGGGCGTGGAGGAGGAGGCTTTCGGCTTGACCCCGGAACCATAGCCAC
CATCGGCTTCGGGCTCCTTTTCGTCTTCGCCCCCGGGGTCATTTTCGGGG
CGTTCAACACCCTGTTCTTGGTGAGAAGTGAGAAAGTCAAGTGATGCATG
AACATGACAACCTTTCCTGCGGACCTGCGGACACCTGGTGTGATCGTTCT
CGAGCGTTATTGGAGACGCGCACGTGGCAACTCCGCGATGGAGGGATGCG
TATTTGCGCCTGTTTGACCTGTTGTACCCTTGAAGTAGTTTCCTACCTAA
GCATCAGCAGCCCGTGGTCATAGGTGCTGCTGCAAGCAGGTTTTCCGACG
GTTCGACGGAGTTTCGGTACAGCAGTACGGTCTGTGTGCCCCCCACGAAG
TTGAGTTCGTTGACTGCAAGAGTTCACCTAAATACCTTCAGCTTTTCTAG
AAGCTAGGTGCTGTCCGATCAGGGAACCACTTATCAAGGAAATAGCTACA
TAGTCTGGGTTGTATCTCCGGCAAGTTGTCGCTCCTGGTGCGATGTTGCG
CATGTTGTGCACGCACCGCCGCGGTGTTGTTGAACCTACGTGTGGGGGCG
ATGCGGAGGAGCACAACTACCGCCATAGGTGCATAAGATGCCATACCCCC
TGCACCGATTTTCTCAAGCCTCGCAGCACGAAGAGTGGTGATGTAGTGCC
GAAAAGGACGGCGTTGGAACCGTCTCGTCGAGAGAGAGAAAGAGCTTTCC
GAAAACACATCCTCTTCGGGGTACAGTAGTAGAGGTCCTCTTCGGGTACA
GTAGTAGAGGTCCTCTTCGGGGTACAGTAGACATCCTCTTCGGGGTACAG
TAGTAGAGGTCCCTGTTTAGTGCCGGGGTGTGCACAGAAATTTCACCGGC
ACTATACCGGGCACCGGCACTATTGAACCGGCACTAAACAGGGACTTCTA
CTGTACTCGAAAATTGGAGATGGTGCCAGGGGTGGTATCTTACGTAATGG
TCTTAGTAGAGGCGGCAGCTCTCTCTTGGGACTGTGACATCAGTCGGTCG
TGTGGCATGACGGCGCCCGAGTAGGAAGGGAGACTTATCATTCACACTCA
AGAAATGATTCCACGCTCCCGACAGATAATCGCCTCCTCATGAAACGACC
GCTCCCGTATGCTGTGGGGGGAGTGGCTTTGGTGATGATAGTGCTCCCCC
GCACAACTCTTTGAAGTAGAGTGATTATATTCATGCGTGCGTGCACGACG
TGGCTTGGTTTTATTAGAGAGTGTATAGAGGAGAACAGGAAGACCTCAGA
CAATACCAGTCGAAGGGTTGTCTTATAGGTTTGTGTGGGAACTGCTTTTT
CAAGGACTCTCCGCCCCCCGTCAAGCCCACCTAACCCCCCGTCGAGCCCA
TCTAGTCCCCCGCCCTGTTTTTCTTTCTGGGACGCCAGCGCTCCGCCGGC
GGGGCTCAGACAGAGGTTGAGACGTGGAAAATACTCTTGCCGTGTCGACT
CGTTCGTTCCCATCTTGCTCTCCCTGGCTCATCCTCATTTATGATTTTCT
GCGCAACCGCTTGTGCGCGTGCTTGTGCGTGCGTGTCCCAGACGATCACC
GTCGGGCCGATCTTGTTTTCCGCGGGGCTTAACCTGTACAACAGAATCAA
CCTCGTCGACGCGCCTTGCCCGGTGTGCGGGGTGGATCTGCAGGGACTCA
AGAACAAGCAGAACCAGTGTCCAAGGTGTGAGATATTCTCATAAGCTCGT
CCCACGAGCTCTCGAATTTCGGAGCTGTGATAGGTCCATTAGGTTTCCCG
CACACTAGGACCATCAAGGACATGCTAAGAACTAGGAGCGCTCAAATGGA
AGCTTGTCTTGTTCCCTCTGTGCGTAGCCTTTGGTGGGGTTTTCTAGCCC
CATCTAGGCAAGAGAATTAGGCTCGTCCCGCACGTGACTACGTCACCTTG
ACCAAAGTACCCTTCAGGTTTGTAGGAGCATCACACCAACAAGCGTTCGG
TCGTTGTGTTGCTAACCACCGTAGCTGTTAGCGTTGAGACTTCTTTGACC
TTAACCCAGCACCTTTTACTTCCCTACTGGAAGACAGCGAAACTAGCCCA
TGAAATGAACATAAGGGTAGAGTACCAAGGCCGACGGGCAGTCCCACCAA
TACTGCCCTACTGGAAGACAGCGATTCTAGTCCATGAAATAAACTTAAGG
CTGCCCTACTGGAAGACAGCGAAAGTAGTCCATGAAGTGAACATAAGGGT
AGAGTGCCAAGGCCGACGGGCAGTCCCACCACTACAGCAGTACCAATAAC
GCATGCTCCAGAAATATCAGCATGCCCAGAGAAGCACATTCACTTGCGTT
TGCAGAAAAGGCGGGCCTCTAATACTATTGTACTCCGGAGTGAATGTGAA
TTTTCACAAGGGGGCGCGGAAAAAAATGATATTTTTGTGCCTGCTGATTG
GTTATTCATATACACTGAAAGGTGTTTTAGCCATGCAATGGAATATGTTG
GACGAACACACACATGCCTTTATCCCAAGTGCGAGCTATCTGACTCTGCC
GGCTGCTTCAATTACACCCGGCTTATCGGCCGGCAAACCGGTTATCCTCC
CACTTTCGCGTGCAAGATACCGGCGTTCGTATCTGTACCGTTCGAGTCTA
GGTCACTAGACGCGAGGAAATTGTTTTCATCAAGATATTGACCCCGGCTT
TCAACCCCCCGCTGCCCGCCCCCGCGCTGCTGCTGTGTCGTGTAGTTGCG
GGGCAATGCTCTTGGCAAAAGACGGGAAGTTTGAAGCCGTGGGGTCGGGG
TACGTGCGTGACGAGGCGGGGACACAGCGGGAGTTCTCGCGCATGGGAGA
CAGCGGCGTCATAGATGTGGATGCGATAGATGTGGACGACTGACCAACGT
CGGGGTATGTGAATTTTTTTAGGGTGTGGTGAATGCGTCGAGAATAGATT
GGTGACGCGAACACGGATGATATAGACTTAAATTCTGGAGAGATATTAAC
TGCCATCAGCAACAATGTCTGGCCTATGCGTAGCACGCGAACTACCGCTT
TCCCTCGGTGAGAGACGAGCGGGAGAGCACTTTTGAATGAGAAGCTGGCC
CTTTGCGACTGACGAGGTGTCGTTTTTTGGCGTCTTTTGCTAGAGCGAGC
GATCAAGTTGGGTTTCGACGACGGTTTGACGAAGTCAGCAAGGCCCGACT
GGTTGTAGGAGGCGAGAGTTGGTTTGTGTAGAGAGTCACCTTGGTCGTTC
GCATCGAAAGCAGCAGACCTGTTTGGCGAAGCCGTCGTCTGCGTTTGGTG
TCCGCTGCAATTCGGACACTGTCAGTTTCATTATTTAGCCGCTGCGTGTC
CCCGTAGCACAGTATCGGTTTCGTTATGAACCGCCAGGTGTCGATCACAG
ACGTATAATAGGTATGATTGGAGAATAGAGTATTTCTTGGCCTTGTAGTT
CTGCTGGTGTGTTGACGTGGTGCATCTGGTGGTGCCCCGTTGTATAGGCT
AGATTTATGCTCCATCAGCGCCCCTGACAACCAGCTGCGGTATTTGTTGT
TCAAGGAATGAGCAAATTGGACGCATGACGGAAAGGATTAGCCCAATGTT
TCGGGTTGACCGCGGATACCGTCGACAACTAGATCGGCGTACTTATTTGG
TGAGCTCAGCAGACGCAGGGTCAACGCACCCGCGGACGATGTTTCGAAGT
GCCAGCCCCACGGCTCGAAACCACAGGAGAAACGGTGGGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1206:7313..11504+

>mRNA_E-fasciculatus_F_contig1206.1607.1 ID=mRNA_E-fasciculatus_F_contig1206.1607.1|Name=mRNA_E-fasciculatus_F_contig1206.1607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:7313..11504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGAAGAGGAGAAGCTTCGCCATGGTGGCGTGCACCACGGCCGCTGC
TGCGCTGATGTCAATGCAATCAAGCACGGCCTTCGTACCACCGACCACCA
CGCTCGTGTCCCCGCCGGCCACCGCGTTGCATAGCAGCAGCGCAGTAGGC
AGGAGTCGTGGCCACGTATCGCAGTTCCAGCCTGGCTCGGGGTCCTTCGG
CTACAAGGTCGGGTTGGAGAGGAGAGGAGCGCCAGCACAACTGCTGTCCC
GCACGCAGCGGCGGCCGAGCAGACGGAGCCAGGCAACAGCCATGGTGTTT
GGCGGGGGCGGGGGCGGTGGGCGTGGAGGAGGAGGCTTTCGGCTTGACCC
CGGAACCATAGCCACCATCGGCTTCGGGCTCCTTTTCGTCTTCGCCCCCG
GGGTCATTTTCGGGGCGTTCAACACCCTGTTCTTGATGCCGAAGAGGAGA
AGCTTCGCCATGGTGGCGTGCACCACGGCCGCTGCTGCGCTGATGTCAAT
GCAATCAAGCACGGCCTTCGTACCACCGACCACCACGCTCGTGTCCCCGC
CGGCCACCGCGTTGCATAGCAGCAGCGCAGTAGGCAGGAGTCGTGGCCAC
GTATCGCAGTTCCAGCCTGGCTCGGGGTCCTTCGGCTACAAGGTCGGGTT
GGAGAGGAGAGGAGCGCCAGCACAACTGCTGTCCCGCACGCAGCGGCGGC
CGAGCAGACGGAGCCAGGCAACAGCCATGGTGTTTGGCGGGGGCGGGGGC
GGTGGGCGTGGAGGAGGAGGCTTTCGGCTTGACCCCGGAACCATAGCCAC
CATCGGCTTCGGGCTCCTTTTCGTCTTCGCCCCCGGGGTCATTTTCGGGG
CGTTCAACACCCTGTTCTTGACGATCACCGTCGGGCCGATCTTGTTTTCC
GCGGGGCTTAACCTGTACAACAGAATCAACCTCGTCGACGCGCCTTGCCC
GGTGTGCGGGGTGGATCTGCAGGGACTCAAGAACAAGCAGAACCAGTGTC
CAAGACGATCACCGTCGGGCCGATCTTGTTTTCCGCGGGGCTTAACCTGT
ACAACAGAATCAACCTCGTCGACGCGCCTTGCCCGGTGTGCGGGGTGGAT
CTGCAGGGACTCAAGAACAAGCAGAACCAGTGTCCAAGTTGCGGGGCAAT
GCTCTTGGCAAAAGACGGGAAGTTTGAAGCCGTGGGGTCGGGGTACGTGC
GTGACGAGGCGGGGACACAGCGGGAGTTCTCGCGCATGGGAGACAGCGGC
GTCATAGATGTGGATGCGATAGATGTGGACGACTGATTGCGGGGCAATGC
TCTTGGCAAAAGACGGGAAGTTTGAAGCCGTGGGGTCGGGGTACGTGCGT
GACGAGGCGGGGACACAGCGGGAGTTCTCGCGCATGGGAGACAGCGGCGT
CATAGATGTGGATGCGATAGATGTGGACGACTGA
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