mRNA_E-fasciculatus_F_contig12050.1600.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12050.1600.1
Unique NamemRNA_E-fasciculatus_F_contig12050.1600.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Match: D7FVQ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVQ1_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.240e-88
Identity = 133/137 (97.08%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:    1 NKFDSDRKYDPFLDTDPVIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAKEQQVGIMNYIREGGRQAGKRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV 411
            NKFDSDRKYDPFLDTDPVIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAKEQQ  IMNYIREGGR  GKRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV
Sbjct:   23 NKFDSDRKYDPFLDTDPVIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAKEQQ--IMNYIREGGRHVGKRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV 157
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BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Match: A0A836CGG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.940e-37
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1 
Query:   16 DRKYDPF-LDTDPVIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAKEQQVGIMNYIREGGRQAGKRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV 411
            ++K+DPF    D V+ D K GME LL M + VE++SL GALG + P    + E++  +M+YIREG  QA +RFA+VL+F WEGLLFEYLR+VGCP+   E DPR +V++YWRRS  DP     FVP+Y +R V
Sbjct:   30 EKKFDPFGKGADRVMLDMKAGMEMLLDMHSPVELSSLCGALGVLEPV--TSPERKSAVMHYIREGRHQAEQRFAEVLRFVWEGLLFEYLRSVGCPVFTAERDPRIYVLKYWRRSTTDPRGAASFVPYYLERRV 160
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BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Match: A0A7S1XJ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ94_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.480e-23
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 1 
Query:   28 DPFLDTDPVI-QDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAKEQQVGIMNYI-----REGGRQAGKRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV 411
            DPF + + ++ QD  +G++ +L + N VE++SL G+LG  +  P   +E +  +  Y+     +E G    + + +VLK  WEG+LFEYLR+VG PL     DPR FV RYW++   DP  R  FVP+Y  REV
Sbjct:   38 DPFAEQNSLLRQDMAKGLDDILELHNPVEMSSLCGSLGIDIDLP--IEEMKAEVRRYVQSHKAKENGTHVERNYHEVLKVVWEGVLFEYLRSVGQPLHSNHLDPRTFVARYWKKRATDPKNRL-FVPYYTGREV 168
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BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Match: F0YAF5_AURAN (WW domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAF5_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.020e-18
Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 1 
Query:    1 NKFDSDRKYDPFLDTDP-VIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAK-EQQVGIMNYIR-EGGRQAG--KRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPS-----VRPGFVPFYAKR 405
            NKF   +  DP ++ +  + Q+ +EG+  LL M N  E+ SL GALG V  C      E++ G+M  +  EG R     K   D L   W+G+LFEYLR  G PLR    DPR F ++ WR+     S      RP +VP + +R
Sbjct:   22 NKFAKGQVLDPLVEEEKRLAQNLREGLSTLLDMHNPAELGSLCGALGLVEECEFGTHGEKKAGVMRRVALEGARHGSTEKAHMDCLAMMWDGILFEYLRAEGMPLRSARIDPRVFTLQLWRKRAAFNSGGNVVFRPHYVPRHIRR 166
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BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Match: A0A8J2WS82_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS82_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-14
Identity = 47/143 (32.87%), Postives = 69/143 (48.25%), Query Frame = 1 
Query:    1 NKFDSDRKYDPFLDTDP-VIQDSKEGMEALLSMCNAVEINSLFGALGFVVPCPRNAK-EQQVGIMNYIREGGRQAG---KRFADVLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPG-FVPFYAKREV 411
            NKF      DP +  +  +    +EG+  LL M N  E+ SL GA+G V  C      E++ G++  + + G +     +   + L+  W+G+L+EYLR  G PLR    DPR F ++ WRR         G F P Y  R V
Sbjct:  103 NKFSKSEILDPLVQEEKNLAAQLREGLSKLLDMHNPAELGSLCGAMGLVEECEFGTHAEKKAGVLRKVAQTGARYNSTERAHMECLETMWDGILYEYLRAEGQPLRSARVDPRVFTLQMWRRRAAFSQGGQGIFRPHYVPRMV 245
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12050.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVQ1_ECTSI1.240e-8897.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGG2_9STRA6.940e-3752.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XJ94_9STRA1.480e-2340.30Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YAF5_AURAN2.020e-1837.24WW domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A8J2WS82_9STRA1.500e-1432.87Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12050contigE-fasciculatus_F_contig12050:3038..3884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue2.5e-15
Seed eggNOG ortholog44056.XP_009037371.1
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.9347575-CDS-E-fasciculatus_F_contig12050:3037..32201622927713.9347575-CDS-E-fasciculatus_F_contig12050:3037..3220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 3038..3220 +
1695995662.726652-CDS-E-fasciculatus_F_contig12050:3037..32201695995662.726652-CDS-E-fasciculatus_F_contig12050:3037..3220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 3038..3220 +
1622927713.9604537-CDS-E-fasciculatus_F_contig12050:3653..38841622927713.9604537-CDS-E-fasciculatus_F_contig12050:3653..3884Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 3654..3884 +
1695995662.745291-CDS-E-fasciculatus_F_contig12050:3653..38841695995662.745291-CDS-E-fasciculatus_F_contig12050:3653..3884Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 3654..3884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12050.1600.1prot_E-fasciculatus_F_contig12050.1600.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12050 3038..3884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12050.1600.1

>prot_E-fasciculatus_F_contig12050.1600.1 ID=prot_E-fasciculatus_F_contig12050.1600.1|Name=mRNA_E-fasciculatus_F_contig12050.1600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
NKFDSDRKYDPFLDTDPVIQDSKEGMEALLSMCNAVEINSLFGALGFVVP
CPRNAKEQQVGIMNYIREGGRQAGKRFADVLKFCWEGLLFEYLRTVGCPL
RDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREV*
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mRNA from alignment at E-fasciculatus_F_contig12050:3038..3884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12050.1600.1 ID=mRNA_E-fasciculatus_F_contig12050.1600.1|Name=mRNA_E-fasciculatus_F_contig12050.1600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=847bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12050:3038..3884+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACAAGTTCGACAGCGACCGCAAGTATGATCCCTTCCTGGACACGGATCC
CGTCATACAGGACAGCAAAGAGGGTATGGAGGCGCTGCTTTCGATGTGCA
ACGCGGTCGAGATCAACAGTCTGTTTGGGGCCCTGGGGTTTGTCGTTCCA
TGCCCGAGAAACGCAAAGGAACAGCAGGTAGGTGTGGGAAGTGCCAAAGT
GGGTGTCTACCTCGCGCACTCACACACAATTTTCGCTGTTGGTGGACCTG
TCAAGAAGTGTGCAGAAAGATTTCGCGCCCTCGCACCGCCTCCCGTTTAC
CTTGTGCGGGTAGATTTTTTCAGAGCGGCCGTCTACGAAACGAGATGTGC
TCATGTATGTTCGGTTCGGTTCGGCGTGTTTCCCGTACGTTTGCGCACGA
CACAGCTCGTGGGGAGGCCGCCCCAATACGCGTTCGTATCCTAGGATATT
GTTTTCCCAGGCTTGCAGCAACGTTGGGTGGGTTTCTACCACCTCGTCCC
TTGTTGTTGTTGCAGATGCCATAAAATTGGTGTGGTCTCGACTGCTTTCC
CTCTCCTTTACGTTGAAGCCGAGAGCATCCGCCGACTACTGACCCTGCTG
TACCATCGTGCAACAGATCATGAACTACATCCGAGAAGGCGGACGGCAAG
CGGGGAAAAGATTCGCGGACGTGCTGAAGTTCTGTTGGGAGGGTCTGCTT
TTCGAGTACCTCCGCACGGTGGGGTGTCCGCTGCGGGACCGAGAGCACGA
CCCCCGGCACTTCGTGATGCGGTACTGGCGGAGAAGTATGCTGGACCCAA
GTGTTCGGCCTGGCTTCGTTCCTTTCTACGCCAAAAGAGAGGTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12050:3038..3884+

>mRNA_E-fasciculatus_F_contig12050.1600.1 ID=mRNA_E-fasciculatus_F_contig12050.1600.1|Name=mRNA_E-fasciculatus_F_contig12050.1600.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12050:3038..3884+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACAAGTTCGACAGCGACCGCAAGTATGATCCCTTCCTGGACACGGATCC
CGTCATACAGGACAGCAAAGAGGGTATGGAGGCGCTGCTTTCGATGTGCA
ACGCGGTCGAGATCAACAGTCTGTTTGGGGCCCTGGGGTTTGTCGTTCCA
TGCCCGAGAAACGCAAAGGAACAGCAGGTAGGTAACAAGTTCGACAGCGA
CCGCAAGTATGATCCCTTCCTGGACACGGATCCCGTCATACAGGACAGCA
AAGAGGGTATGGAGGCGCTGCTTTCGATGTGCAACGCGGTCGAGATCAAC
AGTCTGTTTGGGGCCCTGGGGTTTGTCGTTCCATGCCCGAGAAACGCAAA
GGAACAGCAGGTAGGTATCATGAACTACATCCGAGAAGGCGGACGGCAAG
CGGGGAAAAGATTCGCGGACGTGCTGAAGTTCTGTTGGGAGGGTCTGCTT
TTCGAGTACCTCCGCACGGTGGGGTGTCCGCTGCGGGACCGAGAGCACGA
CCCCCGGCACTTCGTGATGCGGTACTGGCGGAGAAGTATGCTGGACCCAA
GTGTTCGGCCTGGCTTCGTTCCTTTCTACGCCAAAAGAGAGGTGTGAATC
ATGAACTACATCCGAGAAGGCGGACGGCAAGCGGGGAAAAGATTCGCGGA
CGTGCTGAAGTTCTGTTGGGAGGGTCTGCTTTTCGAGTACCTCCGCACGG
TGGGGTGTCCGCTGCGGGACCGAGAGCACGACCCCCGGCACTTCGTGATG
CGGTACTGGCGGAGAAGTATGCTGGACCCAAGTGTTCGGCCTGGCTTCGT
TCCTTTCTACGCCAAAAGAGAGGTGTGA
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