mRNA_E-fasciculatus_F_contig12050.1599.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12050.1599.1
Unique NamemRNA_E-fasciculatus_F_contig12050.1599.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A6H5KVK9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK9_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 8.230e-76
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 1
Query:    1 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            GFAQNDSDPDANTRAA+MGVGFLFLVHCFLQCRDSLFVRPHPGVWR+VHGVGMLYLFA+SVLLVHPKDEAQRLLAIFIPDVKGYTLSRFE GSLECELSA AVIGQLREVWFLAHLVGW
Sbjct:   88 GFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFALSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEVGSLECELSASAVIGQLREVWFLAHLVGW 206          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.430e-41
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLS---------RFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            GF Q+D+D D  TRAA  GV F+FL HCFLQCRD+LFVRPHPGVWR+VHG+GM+YL  V+VLL H + EA+RLL++   D++    +            A  ++C LS GAV+GQLREVWF AH+ GW
Sbjct:   92 GFRQDDADRDTGTRAALAGVTFIFLAHCFLQCRDTLFVRPHPGVWRVVHGLGMVYLLGVAVLLFHTRAEARRLLSVVFTDMESAAAAPGGADGAAPASAAEEMDCTLSWGAVLGQLREVWFAAHVAGW 219          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: I2CSE4_NANGC (Phosphatidylserine synthase 2 (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CSE4_NANGC)

HSP 1 Score: 136 bits (342), Expect = 1.590e-35
Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    1 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSL-ECELSAGAVIGQLREVWFLAHLVGW 357
            G+A +   P+ N R A   + F+FL HCFLQCRDS+ +RPHPGVWR+VHG+GMLYL  + V++VH K  A+ L+ +F PD+ G T  +     L +C L+A ++  QL EVWF+AH +GW
Sbjct:  101 GYAHHSPTPEGNIRMALFAIAFIFLTHCFLQCRDSVLIRPHPGVWRVVHGIGMLYLMCLGVVMVHDKAGARALVRVFFPDI-GETPQKSPTPELMDCSLTAASIWHQLTEVWFVAHALGW 219          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A6G0X7J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7J1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.600e-27
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  +  D   N R   M   F+FLV+CFLQ RD L VRPHPGVWR+VHG+ +LYL  ++ L V     A   + +  P+V     S+     LECEL+A  +   +  +WFLAH+ GW
Sbjct:   93 FTHDSDDFAQNVRNGGMSAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAQSATAAIRVLFPEVGVKKESKLPRAPLECELNASTIQRGVSSIWFLAHVTGW 210          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A6S9GKL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GKL1_HETAK)

HSP 1 Score: 108 bits (269), Expect = 3.820e-25
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   19 SDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGS--------LECELSAGAVIGQLREVWFLAHLVGW 357
            +D  +  R     + F FLVHCFLQCRD+L VRPHPGVWR+VHG+GMLYL  ++ LL   + +A R + +  PDV     +R EA +         +C  S   ++ +  EVWF AH++GW
Sbjct:   89 ADEGSRFRLTVAVMSFCFLVHCFLQCRDTLLVRPHPGVWRVVHGLGMLYLLFLAFLLCQDRADALRYVRLLAPDV-----ARLEAQAGASALHTAQDCGFSVPRLVEEFTEVWFYAHVLGW 204          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A485KMU7_9STRA (Aste57867_9260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMU7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.420e-24
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYT-LSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  +  D   N R  ++   F+FLV+CFLQ RD L VRPHPGVWR+VHG+ +LYL  ++ L V     A   + +  P+V G   +       LEC+L+A ++   +  +WFLAH+ GW
Sbjct:   95 FTHDSDDFAQNVRNGSISAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAKSATAAIRVLFPEVGGKRKVVTTPRPPLECDLNATSLHRGISSIWFLAHITGW 213          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A225X2S3_9STRA (Phosphatidylserine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2S3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.020e-24
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  +  DP  N R A      +FLV+CFLQ RD L +RPHPGVWR+VHG  ++YL  ++ +LV  ++ A + +    P+V G          L+CE+++ ++   +  +WF AH+ GW
Sbjct:   86 FTHDSQDPVQNARTALFAAILIFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVIYLLLLAAMLVQNRESAMQAMQYVFPEV-GSRPKTVAPAQLQCEINSESLTRGVTSIWFFAHVTGW 202          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A2D4BLI8_PYTIN (Phosphatidylserine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLI8_PYTIN)

HSP 1 Score: 103 bits (256), Expect = 3.120e-23
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  + +DP  N R        +FLV+CFLQ RD L VRPHPG+WR+VHG  ++YL  ++ + V  +  A   +  F P+V            LEC+++A  +   +  +WFLAH+ GW
Sbjct:  155 FTHDSNDPVQNVRTGLCTAVLIFLVYCFLQTRDGLMVRPHPGLWRVVHGCSVVYLLLLAAVSVQNRQGAITSMQFFFPEVGSQRKMTQRGQKLECDINADTIYRGVSSIWFLAHVTGW 272          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: A0A3R7J365_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J365_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.710e-23
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  +  D   N R A      +FLV+CFLQ RD L +RPHPGVWR+VHG  ++YL  ++ +L+  ++ A + +    P+V G          LECE+++ ++   +  +WF AH+ GW
Sbjct:   35 FTHDSQDTTQNVRTALFAAILVFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVVYLLILAAMLLQNRESAMKAMQYLFPEV-GSRPKTVAPAQLECEINSKSLTRGVTSIWFFAHVTGW 151          
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Match: F0W7D0_9STRA (Phosphatidylserine synthase putative n=6 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7D0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.680e-23
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSAGAVIGQLREVWFLAHLVGW 357
            F  +  D   N  A  +   F+FLV+CFLQ RD L VRPHPG+WRLVHG  ++YL  ++VL V  +  A  LL    P + G +     A +L CE+++  +   +  +WF AH+ GW
Sbjct:  227 FTHDSDDMSQNIHAGIISGAFIFLVYCFLQTRDGLLVRPHPGLWRLVHGCSVMYLLLLAVLSVQGRTSAPVLLQFLFPRI-GSSKKTISA-ALNCEINSTNIYNGISSIWFFAHVTGW 342          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12050.1599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK9_9PHAE8.230e-7695.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG66_9STRA1.430e-4155.47Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]
I2CSE4_NANGC1.590e-3549.17Phosphatidylserine synthase 2 (Fragment) n=2 Tax=M... [more]
A0A6G0X7J1_9STRA6.600e-2742.37Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6S9GKL1_HETAK3.820e-2542.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485KMU7_9STRA4.420e-2440.34Aste57867_9260 protein n=1 Tax=Aphanomyces stellat... [more]
A0A225X2S3_9STRA8.020e-2437.29Phosphatidylserine synthase n=1 Tax=Phytophthora m... [more]
A0A2D4BLI8_PYTIN3.120e-2337.29Phosphatidylserine synthase n=2 Tax=Pythium insidi... [more]
A0A3R7J365_9STRA3.710e-2336.44Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
F0W7D0_9STRA4.680e-2339.83Phosphatidylserine synthase putative n=6 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12050contigE-fasciculatus_F_contig12050:51..933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D7FVQ2
Preferred namePTDSS1
KEGG rclassRC00017,RC02950
KEGG koko:K08729,ko:K08730
KEGG ReactionR07376,R07377
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Phosphatidylserine synthase
EggNOG OGsKOG2735@1,KOG2735@2759
EC2.7.8.29
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphatidylserine synthase
Ec32 orthologEc-01_005920.1
Exons2
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.8822825-CDS-E-fasciculatus_F_contig12050:50..2131622927713.8822825-CDS-E-fasciculatus_F_contig12050:50..213Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 51..213 -
1695995662.702145-CDS-E-fasciculatus_F_contig12050:50..2131695995662.702145-CDS-E-fasciculatus_F_contig12050:50..213Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 51..213 -
1622927713.8947942-CDS-E-fasciculatus_F_contig12050:736..9331622927713.8947942-CDS-E-fasciculatus_F_contig12050:736..933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 737..933 -
1695995662.7151737-CDS-E-fasciculatus_F_contig12050:736..9331695995662.7151737-CDS-E-fasciculatus_F_contig12050:736..933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12050 737..933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12050.1599.1prot_E-fasciculatus_F_contig12050.1599.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12050 51..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12050.1599.1

>prot_E-fasciculatus_F_contig12050.1599.1 ID=prot_E-fasciculatus_F_contig12050.1599.1|Name=mRNA_E-fasciculatus_F_contig12050.1599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRLVHG
VGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELSA
GAVIGQLREVWFLAHLVGW*
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mRNA from alignment at E-fasciculatus_F_contig12050:51..933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12050.1599.1 ID=mRNA_E-fasciculatus_F_contig12050.1599.1|Name=mRNA_E-fasciculatus_F_contig12050.1599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=883bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12050:51..933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTTCGCCCAGAACGACTCCGATCCGGACGCGAACACGCGCGCGGCGGC GATGGGCGTTGGGTTTCTTTTCCTCGTGCACTGCTTCCTGCAGTGCCGAG ACTCTCTCTTCGTCCGGCCGCACCCTGGCGTCTGGCGACTCGTCCACGGG GTCGGCATGCTCTATCTCTTCGCGGTGTCGGTGTTGCTCGTCCACCCGTG AGTCCTTTTTCGAGCCTCGTGCTTCTTGGAGCGGGGCTCGGTTCCTGTCG GCGTGTGTATGTGCTGCTTTGGAAGGCGAATCGTTATAGTAGGAGCTTGG AGTGGTGCCAGCTCGCTTGCGCCCTGGTGTGTCGTTGTGATTTTTGATGA GTGAAGAACCCCCTTGCTCTCTCAAACACCCTTGTTTTTTGTGTTGATGC TTTCTTCAGGTTCTTGTGCGTTTGTGATGGCGTGGTTGCTAGCAATATGA GAATACCTGGGTAGCAGTATTTTCACAACTCTTAAAAAAATTGTTATCTC CACCAGTGAATGTCCACCAACAGCTCATATTCAGTGTGTCAGCTCCCTCA AGGGCCACCAGTTTCTGGGGCTCAATTTTTGATACGACTGTGAAGTGTCA ATATCTGTCTGTCCGCGACGGTCTATCTGCCCGTCTCTCTCCTGATTGCG TTTTTTTATCTCGTGCTGCTTGCTGCGCTCTGCCACTCCCCGCGTTCGCC CCTTTGCTGAAAAAATGCAGCAAGGACGAAGCGCAGCGGTTACTAGCCAT CTTTATCCCTGATGTGAAAGGGTACACGTTGTCCCGCTTTGAGGCCGGCT CCCTCGAGTGCGAGCTCTCGGCGGGCGCCGTCATAGGCCAGCTGCGGGAG GTTTGGTTCCTGGCGCACCTCGTGGGCTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12050:51..933-

>mRNA_E-fasciculatus_F_contig12050.1599.1 ID=mRNA_E-fasciculatus_F_contig12050.1599.1|Name=mRNA_E-fasciculatus_F_contig12050.1599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12050:51..933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTTCGCCCAGAACGACTCCGATCCGGACGCGAACACGCGCGCGGCGGC
GATGGGCGTTGGGTTTCTTTTCCTCGTGCACTGCTTCCTGCAGTGCCGAG
ACTCTCTCTTCGTCCGGCCGCACCCTGGCGTCTGGCGACTCGTCCACGGG
GTCGGCATGCTCTATCTCTTCGCGGTGTCGGTGTTGCTCGTCCACCCGGC
TTCGCCCAGAACGACTCCGATCCGGACGCGAACACGCGCGCGGCGGCGAT
GGGCGTTGGGTTTCTTTTCCTCGTGCACTGCTTCCTGCAGTGCCGAGACT
CTCTCTTCGTCCGGCCGCACCCTGGCGTCTGGCGACTCGTCCACGGGGTC
GGCATGCTCTATCTCTTCGCGGTGTCGGTGTTGCTCGTCCACCCCAAGGA
CGAAGCGCAGCGGTTACTAGCCATCTTTATCCCTGATGTGAAAGGGTACA
CGTTGTCCCGCTTTGAGGCCGGCTCCCTCGAGTGCGAGCTCTCGGCGGGC
GCCGTCATAGGCCAGCTGCGGGAGGTTTGGTTCCTGGCGCACCTCGTGGG
CTGGTGACAAGGACGAAGCGCAGCGGTTACTAGCCATCTTTATCCCTGAT
GTGAAAGGGTACACGTTGTCCCGCTTTGAGGCCGGCTCCCTCGAGTGCGA
GCTCTCGGCGGGCGCCGTCATAGGCCAGCTGCGGGAGGTTTGGTTCCTGG
CGCACCTCGTGGGCTGGTGA
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