mRNA_E-fasciculatus_F_contig12043.1591.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI) HSP 1 Score: 278 bits (711), Expect = 2.400e-88 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGHE 403
EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGS+HVFHATVYSDLLRNPLVVPLKILRGHE
Sbjct: 475 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHE 608
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE) HSP 1 Score: 275 bits (704), Expect = 2.650e-85 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGHE 403
EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHP+GDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASA DDGS+HVFHATVYSDLLRNPLVVPLKILRGHE
Sbjct: 715 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASAGDDGSVHVFHATVYSDLLRNPLVVPLKILRGHE 848
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA) HSP 1 Score: 219 bits (557), Expect = 4.070e-70 Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGH 400
+VQ V FH KPF F+AT+ VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+S PYKTLKYH+KAVRA FHR YPLMAS +DDG++HVFHATVY DL++NPLVVP+KILRGH
Sbjct: 59 QVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGH 191
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK) HSP 1 Score: 216 bits (550), Expect = 4.280e-69 Identity = 97/133 (72.93%), Postives = 115/133 (86.47%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGH 400
+VQ +FH SKPFLFVAT+ VR+YHL+KQ LVKK+++GCKWIS +DVHP+GDH++VGSYDRRV W DLDL+S PYKTLKYH +AVR A +H YPLMASA+DDG +HVFHA VYSDLLR PL+VPLKILRGH
Sbjct: 57 QVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHARAVRGAAYHPRYPLMASAADDGRVHVFHAAVYSDLLREPLIVPLKILRGH 189
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A6A5AIM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIM9_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.590e-67 Identity = 95/133 (71.43%), Postives = 116/133 (87.22%), Query Frame = 2
Query: 5 VQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGHE 403
+Q V FH +KPF F+AT+ VR+Y+L++Q +VKKL SG KWISC+ VHPSGDH++VGSYDRR+ WFDLDL+STP+KTLKYH KA RA FH+ YPLMASASDDG+IH+FHA VYSDL++NPL+VPLKILRGHE
Sbjct: 168 IQAVSFHPTKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISCLHVHPSGDHVLVGSYDRRLCWFDLDLSSTPFKTLKYHEKATRAVGFHKRYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHE 300
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A7S2ES45_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES45_TRICV) HSP 1 Score: 209 bits (533), Expect = 2.470e-66 Identity = 90/134 (67.16%), Postives = 114/134 (85.07%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGHE 403
E Q FH KPFL VAT+ V+IYHL++Q +VK+L++GC+W+S +DVHP+GDH++VGS DRR WFDLDL STPYKTLKYH +AVR+ +HR YPLMAS+SDDG+IHVFH+TVYSDL+RNPL+VP+K+LRGH
Sbjct: 70 EPQAACFHPDKPFLLVATQTHVKIYHLVRQTMVKRLMTGCRWVSSLDVHPTGDHVLVGSLDRRAVWFDLDLGSTPYKTLKYHERAVRSVSYHRRYPLMASSSDDGTIHVFHSTVYSDLMRNPLIVPVKVLRGHS 203
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A1E7FQD8_9STRA (BOP1NT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQD8_9STRA) HSP 1 Score: 221 bits (562), Expect = 4.430e-66 Identity = 98/133 (73.68%), Postives = 118/133 (88.72%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGH 400
E Q FH +KPFLFVA++Q VR+YHL+KQ +VK+LISGC+WIS +D+H SGDHLIVGS DRR+ WFDLDL+STPYKTLKYH +AVRA QFH+ YPLMASASDDGS+H+FH+ VYSDL+RNPL+VP+KILRGH
Sbjct: 504 EAQAACFHPNKPFLFVASQQHVRVYHLVKQAMVKRLISGCRWISSLDIHKSGDHLIVGSLDRRMVWFDLDLSSTPYKTLKYHERAVRAVQFHQRYPLMASASDDGSVHIFHSMVYSDLMRNPLIVPVKILRGH 636
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.460e-65 Identity = 98/133 (73.68%), Postives = 119/133 (89.47%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGH 400
+VQ + FH S+P++F+ T+Q V+++HL++Q LVKKL+SGCKW+S IDVHPSGDH+IVGSYDRRV WFDLDL+STPYKTLK+H KAVR+ QFHR YPLMASASDDG+IHVFH VYSDL RNPL+VPLK+LRGH
Sbjct: 690 KVQALSFHPSRPYIFIVTQQHVKLFHLVEQKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEKAVRSLQFHRRYPLMASASDDGNIHVFHCMVYSDLARNPLLVPLKVLRGH 822
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: A0A3R7AFN4_9STRA (BOP1NT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AFN4_9STRA) HSP 1 Score: 214 bits (545), Expect = 5.780e-65 Identity = 94/133 (70.68%), Postives = 116/133 (87.22%), Query Frame = 2
Query: 5 VQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGHE 403
+Q V FH +KPF F+AT+ VR+Y+L++Q +VKKL SG KWISC+ VHP+GDH++VGSYDRR+ WFDLDL+STP+KTLKYH KA RA FH+ YPLMASASDDG+IH+FHA VYSDL++NPL+VPLKILRGHE
Sbjct: 349 IQAVSFHPTKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISCLHVHPTGDHVLVGSYDRRLCWFDLDLSSTPFKTLKYHEKATRAVGFHKRYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHE 481
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC) HSP 1 Score: 216 bits (551), Expect = 1.540e-64 Identity = 98/133 (73.68%), Postives = 117/133 (87.97%), Query Frame = 2
Query: 2 EVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSIHVFHATVYSDLLRNPLVVPLKILRGH 400
E Q FH +KPFLFVA++Q VRIYHL+KQ +VK+L SGC+WIS IDVHPSGDHLIVGS DRR+ WFDLDL+STPYKTLKYH +A+R+ ++H YPLMASASDDG++HVFH+ VYSDL+RNPLVVP+KILRGH
Sbjct: 495 ETQLACFHPNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHERALRSCRYHNRYPLMASASDDGAVHVFHSMVYSDLMRNPLVVPVKILRGH 627 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12043.1591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12043.1591.1 >prot_E-fasciculatus_F_contig12043.1591.1 ID=prot_E-fasciculatus_F_contig12043.1591.1|Name=mRNA_E-fasciculatus_F_contig12043.1591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp RSAVRKVPRVQALPLRRDQAASQDLPPHQADAGEEAHQRVQVDKLHRRPPback to top mRNA from alignment at E-fasciculatus_F_contig12043:794..2645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12043.1591.1 ID=mRNA_E-fasciculatus_F_contig12043.1591.1|Name=mRNA_E-fasciculatus_F_contig12043.1591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12043:794..2645- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12043:794..2645- >mRNA_E-fasciculatus_F_contig12043.1591.1 ID=mRNA_E-fasciculatus_F_contig12043.1591.1|Name=mRNA_E-fasciculatus_F_contig12043.1591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12043:794..2645- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |