mRNA_E-fasciculatus_F_contig10154.157.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10154.157.1
Unique NamemRNA_E-fasciculatus_F_contig10154.157.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7FU58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU58_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.130e-39
Identity = 84/158 (53.16%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:  130 GEAPASGCIGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAEQALVPPPPQQGTENVPD------------------------TALLLTLRPXXPFQGRSISAPERLVSTPVPFTA 522
            GEAPASGCI CQGDG D+ATYWLL+WLRTC LANF+ + AKL WT+FV+MVR +LEA R ARP   AP L D+D EGA  N AE A       QGT NVP+                        +ALLL LR   P   RSISAPERL+S P    A
Sbjct:   11 GEAPASGCISCQGDGRDQATYWLLMWLRTCILANFLGRCAKLAWTVFVLMVRRQLEAKRRARPGPPAPVLGDDDEEGAPPNVAEPAAPVXXXPQGTGNVPNAAGEAAGTGPEVEPPAVVAAAVSGSALLLGLRLPPPLPRRSISAPERLISRPAVIVA 168
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BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7G971_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G971_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.210e-29
Identity = 70/131 (53.44%), Postives = 81/131 (61.83%), Query Frame = 1 
Query:  202 IWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAE-QALVPPPPQQGTENVPD------------------------TALLLTLRPXXPFQGRSISAPERLVSTPV 510
            +WLRTCALANF+ + AKL WT+FV+MVR + EA R A P   AP L D+D EGA AN AE +A VPPPP QGTENVP+                        +ALLL+L P  P   RSISAP RLVSTPV
Sbjct:    1 MWLRTCALANFLGRCAKLAWTVFVLMVRRQWEAKRNALPGPPAPVLGDDDEEGAPANVAEPEATVPPPPPQGTENVPNAAGEAAGTGVEVEPSRIVAATVSGSALLLSLVPPPPLSARSISAPARLVSTPV 131
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BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7FU59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU59_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.810e-25
Identity = 75/156 (48.08%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:   82 SWLFSAAAGTCPAAAAGEAPASGC-IGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAEQALVPPPPQQ----------GTENVPDTALLLTLRPXXPFQGRSISAPERLVSTP 507
            SW  S AA  CP A   EAP SG  IGCQGD  D  +  L  W+ TC LA F+ + AKL W +FV+MVR   EA R  RP   APAL DND+EGA AN  E                        V  +AL L+LRP  P  GRSISAPERL+STP
Sbjct:  155 SWSTSGAAAACPGAV--EAPVSGDNIGCQGDIQDETSLQLFAWMATCLLAYFLGRCAKLGWIMFVLMVRAMWEAKRRERPDPPAPALGDNDVEGAPANLVEPVXXXXXXXXXXXXXXXXXXAASAVFGSALPLSLRPPAPLPGRSISAPERLISTP 308
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BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: A0A6H5JMJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.230e-23
Identity = 77/170 (45.29%), Postives = 89/170 (52.35%), Query Frame = 1 
Query:   67 HHHLPSWLFSAAAGTCPAAAAGEAPASGC-IGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGAR---PAPALRDNDMEGARANGAEQALVPPPPQQGTEN--------------VPDTALLLTLRPXXPFQGRSISAPERLVSTPVPFTA 522
            +H LP W  SAAA   P A  GE P SG  I CQGD  D A+  LL W+ +C LA F+ + AK  W +FV+MVR   EA R  R   PAP    +DMEGA AN     LV P P                    V  + L L+LRP  P  GRSISAPERL+S PV  TA
Sbjct:   58 YHQLPPWRSSAAAVARPGA--GETPESGGNISCQGDSQDEASLQLLAWMASCLLAYFLWRCAKHGWIMFVLMVRAMWEAKRRERHDPPAPVPGADDMEGAPAN-----LVEPVPGXXXXXXXXXXXXXXXXXAVVLGSDLPLSLRPPNPLPGRSISAPERLISRPVIVTA 220
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU58_ECTSI6.130e-3953.16Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G971_ECTSI9.210e-2953.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU59_ECTSI1.810e-2548.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMJ1_9PHAE6.230e-2345.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10154contigE-fasciculatus_F_contig10154:236..2814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size533
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10154.157.1prot_E-fasciculatus_F_contig10154.157.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10154 236..2814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.3532574-CDS-E-fasciculatus_F_contig10154:235..2791622927516.3532574-CDS-E-fasciculatus_F_contig10154:235..279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 236..279 +
1695995574.7135468-CDS-E-fasciculatus_F_contig10154:235..2791695995574.7135468-CDS-E-fasciculatus_F_contig10154:235..279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 236..279 +
1622927516.3647897-CDS-E-fasciculatus_F_contig10154:776..8621622927516.3647897-CDS-E-fasciculatus_F_contig10154:776..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 777..862 +
1695995574.7229846-CDS-E-fasciculatus_F_contig10154:776..8621695995574.7229846-CDS-E-fasciculatus_F_contig10154:776..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 777..862 +
1622927516.3776898-CDS-E-fasciculatus_F_contig10154:1739..18431622927516.3776898-CDS-E-fasciculatus_F_contig10154:1739..1843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 1740..1843 +
1695995574.7330616-CDS-E-fasciculatus_F_contig10154:1739..18431695995574.7330616-CDS-E-fasciculatus_F_contig10154:1739..1843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 1740..1843 +
1622927516.3875978-CDS-E-fasciculatus_F_contig10154:2517..28141622927516.3875978-CDS-E-fasciculatus_F_contig10154:2517..2814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 2518..2814 +
1695995574.7505946-CDS-E-fasciculatus_F_contig10154:2517..28141695995574.7505946-CDS-E-fasciculatus_F_contig10154:2517..2814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10154 2518..2814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10154.157.1

>prot_E-fasciculatus_F_contig10154.157.1 ID=prot_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp
LPGNDGRSSHPHGHGRSSEDANHHHLPSWLFSAAAGTCPAAAAGEAPASG
CIGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEA
NRGARPAPALRDNDMEGARANGAEQALVPPPPQQGTENVPDTALLLTLRP
PPPFQGRSISAPERLVSTPVPFTAATA
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mRNA from alignment at E-fasciculatus_F_contig10154:236..2814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10154.157.1 ID=mRNA_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2579bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10154:236..2814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCCGGAAACGACGGCCGATCTTCTCATCCACACGGCCACGGGTACGT
ACGCGAACGTTTTTATTGCCGTCAATCGATACTATTTATTTTTATTTTTT
CATCATCACTTTAGATCAAGAGTTCCACCGTGACACCAACATCGTGGGAG
AGACTTTGACCTTGCAATAGTGGTCGGTCCTCAGGTAGCAAACCAACACT
CGGGGGGCGGGGTAAAGGGATGACAACGTTTTTGCGTGGGGTGGGACGCC
GATGGCCCTTCCAACGTAAGGAAGGAAAGGGAGGCGGAGTATCCACTAGG
CGCAAATATGGGGAGAGTGCCACCATGAGCAACACTATCATGAGCGAGAT
CGTCTGTTCCTCCCTTCGTCGTGCAGACACGGCCATGCTTTGTACGGTCC
TGCCCTGCGTTTCTGGTCTAGTAGTCTATTTAGTCTATGTGGCGTCTGCT
AAATGCAGGGGGACCTCCAACTCCCCTCACGCAACCCCCCGGCGCTCGTT
GTCCCACCTACCTCTGACTCCCATGGCGCCTGGCTCTCCAGCCGGTCCAG
CGAGGACGCCAATCATCATCATCTCCCGTCGTGGTTGTTCTCTGCCGCTG
CCGGTACTTGTCCCGCTGCTGCCGCTGGTGCGTACGATTTCCATCGGAAT
TTTCGCGAGGAAGATCAGTTTTTGGTTGGAAGGCTCTCTCGTGCTAGGGT
CACTTTTTTTGCCTTTCTTCTGTTTCCTTTGGTGCTTGCTCTGGAGCTTC
CGCTCCTGGCCTGGGTGGAAATCGCTATTTAGTCCGTGCATACACAAAGG
GAAGGAAGAGAGTGCTGCAATCTTCTCGCATTATCAATCGAAGGTAGGTA
GTGCCGCAGTGCAGGGGGGGTGGGCAGGGTAGGGGGTGTCAGGGAGAGGA
ACGCCTCTGTGCGACCACGGGTTGGAGTGAAAGTGCTGCGAGGAGCGCTG
GTTTGAGGTGAAGACAAAGGAAAAGATAAAAAAATATATATTGCTTTGCC
TACATGCCGCTGCCAAACTTCGGGGTCCGGATTTCTATTTTCTCCACATT
TAGAGGACGCATATTCCGTTGGTTGTGTGCAATTTTTGCAGGCCGCGCCT
GCGATCCGCTATTTTTTTCCCCCCTTCTGTCGTCCGGATCTACGATAAAA
TAGGTGTTTCGTTGAAACAGCGTCAATCGATGGCCTTAGCCCCTCTTTTC
GTTGTTGACAGCCCACCGTTCGCGTACGTGCATCCTCGGGCGTGCGTTGC
GCCCTGGGATTTTTCCTCCCCCTCCTCCCTTGCACTCGGATCAGAGCGTC
GTCGTCATAGTGACCATCGCTTTTTGGTGGGCGATTGTCACATGAGCGTA
CCGTACGTGTGCGGTAGATGGATGGCAGGTTGGCAATTTGCACAGCGGCA
GGGGATACGACTCGTAACACCATTGCCACCTTCCCCAGTCATGGTCGCAC
GCACACATACCGATGGATCGCGTACAATGCGTACGCTTTTACCTTTATTG
CCAGGCGAGGCTCCCGCTTCTGGCTGCATTGGCTGCCAGGGAGACGGCAC
AGACCGAGCCACCTACTGGCTGCTGATATGGTTGAGGACTTGCGCCTTGG
CGAATTTTGTGAGTTTCAAAGCAACAATATCTGTGACGTTTATGCTCCGC
GTTTATTCCGCTCCCAGCGAGAGCATTAATCTTGCCTATATCATTTGTGC
GTGAATAACTGATTGGCCCAAGCCATTTTGTGCCAAGCCATCTTGTAGTG
CCAAAAAGGGAGCAATGCACTACGGAGTTTAGCGTGTTCAGAATGATGTA
AGCCAACCATGTCTCGTGAATATGCAACGCAATCAGGCGATGCGTCATGA
GGGCATCACTTTTTTCTCTCAGGAGGGTATTTACCCCCAGAATATGTTTG
TCCGGGCTCGGCTAAAAGTCCCTCAATGCGTAAACATCTGCATCCCCACA
CCGGTAATGATCATCCGCCCAGAACGTGTATTCGCACTCTACTTGTAAAA
CCCTCTCGACAGGTTGGCATGGGCGTTCAGACCCCACGCATGTGAGCGGT
CATCAGCCCAGCATATGCTTGCACGCTCGAACAATCTCTCATAATGTTGG
CGTGGATCTGAACCCCACACATGTGAAAGACTGTCAGCCCAGCATGCGTT
TGCGCACTCGAAAATATCTGAATTTTTTGTCTGGCATGAACACCAATGAA
CGTACGCCAAATCCCACGCAGGGCCTGACCATCACCGTCCCCTTGCTTGC
TCGCCTGCTTTCGTCCGTGTGTGTGATGCCAGGTGATGCAAAGCGCGAAG
CTCGTGTGGACTATTTTCGTGGTGATGGTGCGGACAAGATTGGAGGCGAA
CAGGGGGGCGCGCCCCGCACCGGCGTTGAGAGACAATGACATGGAGGGGG
CCCGCGCGAATGGTGCCGAACAGGCACTGGTTCCTCCGCCGCCACAGCAG
GGAACGGAAAACGTTCCTGACACCGCCCTTCTTCTCACCCTCAGGCCTCC
TCCCCCGTTTCAGGGCAGGAGCATCAGTGCCCCCGAGCGCCTCGTCTCCA
CGCCCGTTCCTTTTACCGCCGCGACTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10154:236..2814+

>mRNA_E-fasciculatus_F_contig10154.157.1 ID=mRNA_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10154:236..2814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCCGGAAACGACGGCCGATCTTCTCATCCACACGGCCACGGCTCCCC
GGAAACGACGGCCGATCTTCTCATCCACACGGCCACGGCCGGTCCAGCGA
GGACGCCAATCATCATCATCTCCCGTCGTGGTTGTTCTCTGCCGCTGCCG
GTACTTGTCCCGCTGCTGCCGCTGCCGGTCCAGCGAGGACGCCAATCATC
ATCATCTCCCGTCGTGGTTGTTCTCTGCCGCTGCCGGTACTTGTCCCGCT
GCTGCCGCTGGCGAGGCTCCCGCTTCTGGCTGCATTGGCTGCCAGGGAGA
CGGCACAGACCGAGCCACCTACTGGCTGCTGATATGGTTGAGGACTTGCG
CCTTGGCGAATTTTGCGAGGCTCCCGCTTCTGGCTGCATTGGCTGCCAGG
GAGACGGCACAGACCGAGCCACCTACTGGCTGCTGATATGGTTGAGGACT
TGCGCCTTGGCGAATTTTGTGATGCAAAGCGCGAAGCTCGTGTGGACTAT
TTTCGTGGTGATGGTGCGGACAAGATTGGAGGCGAACAGGGGGGCGCGCC
CCGCACCGGCGTTGAGAGACAATGACATGGAGGGGGCCCGCGCGAATGGT
GCCGAACAGGCACTGGTTCCTCCGCCGCCACAGCAGGGAACGGAAAACGT
TCCTGACACCGCCCTTCTTCTCACCCTCAGGCCTCCTCCCCCGTTTCAGG
GCAGGAGCATCAGTGCCCCCGAGCGCCTCGTCTCCACGCCCGTTCCTTTT
ACCGCCGCGACTGCGGTGATGCAAAGCGCGAAGCTCGTGTGGACTATTTT
CGTGGTGATGGTGCGGACAAGATTGGAGGCGAACAGGGGGGCGCGCCCCG
CACCGGCGTTGAGAGACAATGACATGGAGGGGGCCCGCGCGAATGGTGCC
GAACAGGCACTGGTTCCTCCGCCGCCACAGCAGGGAACGGAAAACGTTCC
TGACACCGCCCTTCTTCTCACCCTCAGGCCTCCTCCCCCGTTTCAGGGCA
GGAGCATCAGTGCCCCCGAGCGCCTCGTCTCCACGCCCGTTCCTTTTACC
GCCGCGACTGCG
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