mRNA_E-fasciculatus_F_contig1200.1559.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1200.1559.1
Unique NamemRNA_E-fasciculatus_F_contig1200.1559.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1200.1559.1 vs. uniprot
Match: D8LRB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRB1_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 7.510e-43
Identity = 78/94 (82.98%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 LDVPGLTMTGIYQSQAGGALFVDVGSSMDVMNDITFLGNSVALQYNGGLWTWRGGSAVYSAGTTTFYGKADFLGNGQYEADISGEEPANEDGGA 282
            LDVPGLTMTGIYQSQAGGALFVDVGSSM+VM+DITFLGN++A+QY+ GLW  RGG+AVYSAGTTTFYG ADFLGNGQY+AD  G EP+NEDGGA
Sbjct:  512 LDVPGLTMTGIYQSQAGGALFVDVGSSMEVMHDITFLGNTLAIQYDLGLWEARGGAAVYSAGTTTFYGTADFLGNGQYDADADGYEPSNEDGGA 605
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1200.1559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRB1_ECTSI7.510e-4382.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1200contigE-fasciculatus_F_contig1200:2884..4345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size284
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1200.1559.1prot_E-fasciculatus_F_contig1200.1559.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1200 2905..4345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.2558875-UTR-E-fasciculatus_F_contig1200:2883..29041622927709.2558875-UTR-E-fasciculatus_F_contig1200:2883..2904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 2884..2904 +
1695995660.53171-UTR-E-fasciculatus_F_contig1200:2883..29041695995660.53171-UTR-E-fasciculatus_F_contig1200:2883..2904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 2884..2904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.2731538-CDS-E-fasciculatus_F_contig1200:2904..29251622927709.2731538-CDS-E-fasciculatus_F_contig1200:2904..2925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 2905..2925 +
1695995660.5418804-CDS-E-fasciculatus_F_contig1200:2904..29251695995660.5418804-CDS-E-fasciculatus_F_contig1200:2904..2925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 2905..2925 +
1622927709.2866294-CDS-E-fasciculatus_F_contig1200:3340..34481622927709.2866294-CDS-E-fasciculatus_F_contig1200:3340..3448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 3341..3448 +
1695995660.5520391-CDS-E-fasciculatus_F_contig1200:3340..34481695995660.5520391-CDS-E-fasciculatus_F_contig1200:3340..3448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 3341..3448 +
1622927709.301221-CDS-E-fasciculatus_F_contig1200:4213..43451622927709.301221-CDS-E-fasciculatus_F_contig1200:4213..4345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 4214..4345 +
1695995660.5618985-CDS-E-fasciculatus_F_contig1200:4213..43451695995660.5618985-CDS-E-fasciculatus_F_contig1200:4213..4345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 4214..4345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1200.1559.1

>prot_E-fasciculatus_F_contig1200.1559.1 ID=prot_E-fasciculatus_F_contig1200.1559.1|Name=mRNA_E-fasciculatus_F_contig1200.1559.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
MTGIYQSQAGGALFVDVGSSMDVMNDITFLGNSVALQYNGGLWTWRGGSA
VYSAGTTTFYGKADFLGNGQYEADISGEEPANEDGGA
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mRNA from alignment at E-fasciculatus_F_contig1200:2884..4345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1200.1559.1 ID=mRNA_E-fasciculatus_F_contig1200.1559.1|Name=mRNA_E-fasciculatus_F_contig1200.1559.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:2884..4345+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGACGTACCCGGACTCACCATGACCGGCATCTACCAGTCGGTTAGTTA
CACCATTGTCGTTCACCCCAAGCAGAGAGATTTTGCGCCAGCATTCCGAG
GGCATACAGCAGTGGTTGTCACAAGTATGGGGAGCTCGCTGTAGAGGGTT
CGAGCAGCTCGACTGCTTAACAACAACGGTTGTTTCGCGTGCAAGCCCCA
CTCCCGCCGTAGTGACCGCTCTGGCCAACCTTGTGAGAGAGCTTGGGAAG
TTGAGCTGCTCTCCGAACACGTCACAACGAACAGGGGATTTGAAGGGAGA
TGGCGGCCAACGTCGAAGCGCAACCACTATTGTACCCACCAACACTTGGT
AGAGTATTTACTTAAAATCGCATCCGGGCCATTAGCGCCTTCCCTCAATC
TTCGCAACTCGTGTTCCAATGTCGAGCGCATGTCGGTGTGTTTACGTGCT
AATGAAGCAAGCGGGCGGGGCGCTCTTCGTGGACGTCGGCAGCAGCATGG
ACGTCATGAACGACATCACGTTCTTGGGCAACTCTGTCGCCCTCCAGTAT
AACGGTGGGCTCTGGGTGAGAGACAAGTCGGACAAGTGTGGAGCGTCAAA
TAATGGCTGTTCTACCCGTTTGAGATAAGACCCCGGTCGCGGCGACATTT
TTAAGACTTTGGCCTAAGAGAACATTTACCTTTGGCAGCGTTCAAATCGA
TGGGAGGAGAACAACCCGCCCAACAGCAGCACTGGCACACCACGCCACAA
TCTCGCCTCCTTGTCGAGCAAATCCATAGCAGACAGTCGCACGGGGATTT
GTAACCTTGGTTCCCGTACAGTACAGTCGTCGGTAAAAGTTGAAAAGTGG
GGGAACGGGCTAGACTACTCTATCTACGTTCTGTGGAGAGGTTGTCCGGG
ATGTTTCGTGAGACTTGAGGAAAAAACAAATGCCAGCTGTAGAATATTGA
AAGCGGTCAATTGCCCAGCCATGCTCCTTTCTCTCGGCAGCCTGGTCGGT
TCGTTGTTTGGTGCTGTCAGAGAGCATCAGGCAGACCTCGCGCCAGTCGA
TCGATCGCCCGTTTCATGCCACACCGAGAGTTCAGGGAAGCAGTGTGTCT
TGTGGATTTACGGAACCTTTTGCTCGTCCTTTTGCCCTTGCTGCAGCCGC
TATGACGAGCGCATCACCCACCCATCCGATGAAACTCGGGCTTGCTGCCG
CAGTGTCATTGTGTTTGTGCGTGCGTGCGGCCGTGCCTTCCTTCGTCCGG
CTCTCGAGAGCAACCGCTGACTTGACATGCCGGGACGGGATGGGTGTTTA
CTCTCGTGCCTTCTCCTTATCCGTTTCTAGACATGGCGTGGCGGTTCCGC
CGTGTACTCCGCGGGCACGACGACGTTCTATGGAAAGGCCGACTTCCTGG
GCAATGGGCAGTACGAAGCGGATATTAGCGGTGAAGAGCCCGCCAACGAG
GACGGCGGCGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1200:2884..4345+

>mRNA_E-fasciculatus_F_contig1200.1559.1 ID=mRNA_E-fasciculatus_F_contig1200.1559.1|Name=mRNA_E-fasciculatus_F_contig1200.1559.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:2884..4345+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCGGCATCTACCAGTCGATGACCGGCATCTACCAGTCGCAAGCGGG
CGGGGCGCTCTTCGTGGACGTCGGCAGCAGCATGGACGTCATGAACGACA
TCACGTTCTTGGGCAACTCTGTCGCCCTCCAGTATAACGGTGGGCTCTGG
CAAGCGGGCGGGGCGCTCTTCGTGGACGTCGGCAGCAGCATGGACGTCAT
GAACGACATCACGTTCTTGGGCAACTCTGTCGCCCTCCAGTATAACGGTG
GGCTCTGGACATGGCGTGGCGGTTCCGCCGTGTACTCCGCGGGCACGACG
ACGTTCTATGGAAAGGCCGACTTCCTGGGCAATGGGCAGTACGAAGCGGA
TATTAGCGGTGAAGAGCCCGCCAACGAGGACGGCGGCGCGACATGGCGTG
GCGGTTCCGCCGTGTACTCCGCGGGCACGACGACGTTCTATGGAAAGGCC
GACTTCCTGGGCAATGGGCAGTACGAAGCGGATATTAGCGGTGAAGAGCC
CGCCAACGAGGACGGCGGCGCG
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