mRNA_E-fasciculatus_F_contig1199.1547.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1199.1547.1
Unique NamemRNA_E-fasciculatus_F_contig1199.1547.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1199.1547.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI)

HSP 1 Score: 519 bits (1337), Expect = 5.500e-183
Identity = 272/283 (96.11%), Postives = 275/283 (97.17%), Query Frame = 1 
Query:   16 MSETSAAKL-ATGSSAAPPAT--PTKRKKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADAAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYYKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLY 855
            MSETSAAKL ATGSSAAP A   P  ++KTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGAD AVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLY+KLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLY
Sbjct:    1 MSETSAAKLRATGSSAAPSAAAAPATKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLY 283
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BLAST of mRNA_E-fasciculatus_F_contig1199.1547.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.180e-45
Identity = 90/229 (39.30%), Postives = 124/229 (54.15%), Query Frame = 1 
Query:  169 DDIGEWLQSVAPHVLPHTVVVPGGADAAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYYKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLY 855
            D  G  L  +APHV  HT    G +         L   ++     + GVN    A         ++S WY++P+QH++E  +S++VL+PLV  YY+ C   LR        + KR  +L K+WG  LL  V    + K+    + SHPAYL QPCHVHS+ M L AF +   S  ++HV+ TLWWGPFLAFVAP LP   +E+ +FW QH LML     R+  G+ W+Y
Sbjct:    8 DPAGRALVRLAPHVQCHTNTHDGVSW--------LNGWSDIGVSCRSGVNHPDSA---------YLSAWYITPQQHIIETIVSLVVLAPLVGFYYRKCSEGLRAHAVQDRTEKKRFPVLQKVWGGLLLLSVVLQVWFKWNYNHVSSHPAYLAQPCHVHSVAMALTAFSDASWSRGLLHVSATLWWGPFLAFVAPDLPASALEVVVFWIQHTLMLCIIIARVLTGSNWMY 219
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BLAST of mRNA_E-fasciculatus_F_contig1199.1547.1 vs. uniprot
Match: A0A7S2V140_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V140_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.420e-27
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 1 
Query:  373 WYLSPRQHVVEMALSILVLSPLVYLYYKLCRARLRLKRAAGAFDA---KRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVE-TEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALML 810
            W+LSP  HV+E   S++V +P++    K C   LR + A    +     +P LL K+W   LL +      LK+      SHPAYL QPCH+ + +MGL  F   T  +  + HV  T WWGP LA VAP LP    E+ +F+ QH LM+
Sbjct:   81 WFLSPEHHVLEFLASLIVYTPILLFCLKQCAKSLRYQTALQQMEGITIPQPDLLQKVWAVVLLVIATLQIRLKYISLNPASHPAYLLQPCHITTFMMGLITFARPTMLTEALFHVVATTWWGPLLALVAPDLPASSFEVFLFYLQHYLMM 230
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1199.1547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ85_ECTSI5.500e-18396.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0S0_9STRA8.180e-4539.30TMEM164 family-domain-containing protein n=1 Tax=T... [more]
A0A7S2V140_9STRA5.420e-2739.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1199contigE-fasciculatus_F_contig1199:16051..19461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size855
Cds size840
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1199.1547.1prot_E-fasciculatus_F_contig1199.1547.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1199 16066..19461 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.2642632-UTR-E-fasciculatus_F_contig1199:16050..160651622927707.2642632-UTR-E-fasciculatus_F_contig1199:16050..16065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1199 16051..16065 +
1695995659.4265702-UTR-E-fasciculatus_F_contig1199:16050..160651695995659.4265702-UTR-E-fasciculatus_F_contig1199:16050..16065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1199 16051..16065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.2795584-CDS-E-fasciculatus_F_contig1199:16065..164051622927707.2795584-CDS-E-fasciculatus_F_contig1199:16065..16405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 16066..16405 +
1695995659.4449866-CDS-E-fasciculatus_F_contig1199:16065..164051695995659.4449866-CDS-E-fasciculatus_F_contig1199:16065..16405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 16066..16405 +
1622927707.2899344-CDS-E-fasciculatus_F_contig1199:18066..184851622927707.2899344-CDS-E-fasciculatus_F_contig1199:18066..18485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 18067..18485 +
1695995659.4559171-CDS-E-fasciculatus_F_contig1199:18066..184851695995659.4559171-CDS-E-fasciculatus_F_contig1199:18066..18485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 18067..18485 +
1622927707.3003604-CDS-E-fasciculatus_F_contig1199:19380..194611622927707.3003604-CDS-E-fasciculatus_F_contig1199:19380..19461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 19381..19461 +
1695995659.465759-CDS-E-fasciculatus_F_contig1199:19380..194611695995659.465759-CDS-E-fasciculatus_F_contig1199:19380..19461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 19381..19461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1199.1547.1

>prot_E-fasciculatus_F_contig1199.1547.1 ID=prot_E-fasciculatus_F_contig1199.1547.1|Name=mRNA_E-fasciculatus_F_contig1199.1547.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=280bp
MSETSAAKLATGSSAAPPATPTKRKKTFKRALKGTVGVGLAAASAALIAR
SDDIGEWLQSVAPHVLPHTVVVPGGADAAVLADFVLRAIAEAKSCVQEGV
NVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYYKLCR
ARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPA
YLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD
PVEIAIFWAQHALMLLAPFLRLTVGTRWLY
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mRNA from alignment at E-fasciculatus_F_contig1199:16051..19461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1199.1547.1 ID=mRNA_E-fasciculatus_F_contig1199.1547.1|Name=mRNA_E-fasciculatus_F_contig1199.1547.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3411bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1199:16051..19461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAGGAGACACCGCCATGTCGGAAACGTCGGCGGCAAAACTAGCCACCGG
AAGTTCCGCCGCGCCGCCAGCCACCCCAACCAAAAGGAAGAAGACTTTCA
AGCGCGCCCTCAAGGGAACCGTCGGCGTTGGGCTGGCCGCCGCTTCCGCG
GCGCTCATTGCCCGCTCCGACGACATCGGGGAGTGGTTGCAGTCCGTCGC
GCCGCACGTTTTGCCGCACACGGTGGTTGTGCCCGGCGGCGCGGACGCCG
CCGTCCTGGCGGACTTCGTCCTCCGGGCCATCGCGGAGGCGAAGAGCTGC
GTGCAGGAAGGGGTCAACGTCTGCTTGGACGCTGAGGGACGAGTGACGGC
TCTATGTGAGTGGAGTGGATAGACGAAAAGGTAGACGAAAAGGTAGCCAG
TGTTGCTTCAAGTTTATGATGTTGCGAGGCGCTACTTGTACTGCGTGGGT
TCGTGGATCAACGAAAGACGTCCTGCGGTGTGTGTGCCCCAGCTGCTGAA
GCGCGCAGCAAGCGTTTGCGTCAAGTGTTGATGTTGCGAGGCCCTACTCT
GTGAGTTCGTGGATCGACGGAAAGCGTCTGCGGTGTGTGCTGCATGCAAC
CATTGCGCGGCAAAGTGTTGTGGGTTTGATGTTGCGAGATTATGCGGCAA
GAGGCGCCGACCCGGTGGTTGCGACGATTTGGGACAAAAAGCCTCAATAC
ACCTTGACGGGGGGTCCAAATTGAGGCCGATCGGAGCAAACGCGGCGGCG
GTTTGTGACTGGTAGAAAGTAGGAGGGCGAGGCGTGGGTGGTGAAGCGGG
CGAGATGTTGTGTGCAAGCAGCCGGGCAAAGATCAAAGAAGGTTGGAAGT
CGAACTTCGGATGATATAGGAGCGGAAGGCAGCAAAAGGATGCCATTCGC
GAAGCAAGTGTGTAGACACGCTTCTGAACGGCGGTTACTGTCGACGTGCT
CAGCTCCATCTGGATAATTCAAATGAGCAACGTGTGACAGGCGGCACATA
TTGATGTTTTGATGTTGTTGTCGTACTCGACGCCGGAGTGCAGTCGTCCG
GTGTCCCACGCACAGCTACATGTGTCCATGTCCCCCCCCACCACCCAGGA
AGGATGGAGATTTGTCGGGGTAAGAGTCGTTGTTCCCGAACCCAAAGCCA
TTGTCACGAAGCCTGTCTCCGCGCCAGCTTTGACGCTGGGGCTCATTTCT
AGGTGGTGGTGGGGGTACGCTCATGTTTATATTATCACACAGGGGTGCTG
GTACATAAGCGTCGTTGTTCCATTTGTCAGTCCCTTCGTGTTGTTGAGAA
GTATAGTATATCAGGGAACTCAAGGATGAAACAGCGGCTGGGCGGAGACG
AAAATAACACCATTAGTAAAATGTATAGCTGCTCGTCTCGCCAAATTGCG
ATACACCTCTATGTGAAACGCTCATTTTTTTCGGACTGGAGACGAGAGTA
ACCATCACCATCTCTTTTTTTTCTCGTCGACAGCGTCAGTTTGGAGGCGG
CTCTTGTTACCGAGAAAAGGCTTAACCTGCTTCACCCTCTGGCCCTGCCT
TGCTTCAACGATGTTTTTTTTTACCAAGATCAAAGTGCTCGAGAGGCTGT
ATCGACATTCATATGAATCCGGCTCAGTCGAAATCCGCTACCCACTCTCT
TGGTTAGACTCCCCCGACCCGTTTGCAGCACAAGTTGGCACCCTCCTGCA
GCTGCGCATGCTGGGCCACGGCAGAGATGAGCTGTGCTGTCGCACTGACC
ATCGTCTCAACATCTTGCAAATGACTTCAATTTTTACCGTTGACACAAGG
CCCATCTCCTCCGAATGGCATCCATCTCTCCACGCTCCCTCTTGCCGTGC
TCGCCGACACTTCCTGGCGAAACGTCCTCAACCAAGCAGCATGTTCGTCT
TCGAACGCTCCACATCTTCAGTAGTCGATCGCCCTGGCCCTGATATATAA
AACGACTCTCCACGTGCCCTCTCGTTTTTTTAACCCTTCCTTCTTCCTTC
CACCCCCCCACGGCAGACACGTTTATTTCTCAGTGGTACCTGAGCCCCAG
GCAGCACGTGGTGGAGATGGCCCTCTCCATCCTCGTCCTGTCCCCTCTTG
TCTACCTCTACTACAAGCTCTGCCGAGCGCGGCTGAGGCTCAAGCGCGCG
GCGGGAGCCTTCGACGCGAAGAGACCAAGCCTCCTCATGAAGCTCTGGGG
GGCGGCGCTGCTGGGGCTCGTCGGAGCAGGAGCGTTCCTCAAGTTCACCA
AGCAGGAGCTCATCTCGCACCCGGCGTACCTGTGGCAGCCCTGCCACGTC
CACAGCCTCGTCATGGGGCTGTGCGCCTTCGTGGAGACGGAGGGCTCGCT
GCTGGTGATGCACGTGGCCACGACCCTTTGGTGGGGACCGTTCTTAGCGT
TCGTGGCGCCCTCGCTGCCAACCGACCCCGTAGAGGTATGTAGGGGCGCT
TCTTTTTTTATCACAACAAATTCTATGTCTGTACATCCTTCGGTTTTTCT
TGTTTGGTTCGGTTTTTTTGGANNNNNNNNNNGGGGGGGGGGGGGGGGCT
GCTTTTGTAGGTGGTTTGTTGTTGGTTTGAAGAAGAATCGTGCTGCGTCC
AGGAAAAGGCGGCGCCATGCGGTATGATTCGACTCTGGGAAGAAATTGTT
TGAGAATGGTTGTCGAGAGTTCGAGACCCTCGACGGCACAGCGAAAAGAA
GGTGAACTGTTGTTTACCTCCAAGACCGCACGGTGACGAGCAATGAGATA
CAGAGCGGTCATGGAGCCCCAGCTAACTACCGCCTGCCCTGCATGAGCAA
GGCTACACTCTTAAAAGCATCTCACGTTCGCGCCAATTACAAAGAGGAGA
CTGACTGCACGGGAAGGGCGACAGCACGATTTGTTTGCCGCCGCTGGTGC
CTCTCTACAAGTACTCTATTCGTCTCAAGTACGGCGATGCCACTCGCGGT
TCTCCGTGCGAACCAAGCCTGATGAACTTGAACATTATATCCTTTCGTTT
ACGGAAGGCTTTGTTTTTGGGGCGGGGGTCCTGGGTCTGCTTCAGAATCA
GAAAAGGGGGCAGACGGATTGTGCTCCCTACCTCCCTTTGCTGTCTCTGA
TTTTCATGGCGTCCCGACGGTTGTGGTACATGGGGTCCTCCCTCGGCCTG
TAAGGTGGCTCTTTCCTCGCACGTTGTTCGCCACGTCCGGCCCGTTCGGC
ATCTTTCGTTCGCAGTTCAAGCGAAACTAGTGTTCGCATCGGCACCATGC
TGACGTTTTGCGGCTTCCCTCCGTTCCTATCGTATGCTGCGAAACCGATC
GAACGTTCCGCGACGACGACGACGATACAGATCGCCATTTTCTGGGCGCA
GCATGCCCTGATGCTACTAGCTCCGTTCCTTCGACTGACGGTGGGAACGC
GGTGGCTGTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1199:16051..19461+

>mRNA_E-fasciculatus_F_contig1199.1547.1 ID=mRNA_E-fasciculatus_F_contig1199.1547.1|Name=mRNA_E-fasciculatus_F_contig1199.1547.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1680bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1199:16051..19461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGAAACGTCGGCGGCAAAACTAGCCACCGGAAGTTCCGCCGCGCC
GCCAGCCACCCCAACCAAAAGGAAGAAGACTTTCAAGCGCGCCCTCAAGG
GAACCGTCGGCGTTGGGCTGGCCGCCGCTTCCGCGGCGCTCATTGCCCGC
TCCGACGACATCGGGGAGTGGTTGCAGTCCGTCGCGCCGCACGTTTTGCC
GCACACGGTGGTTGTGCCCGGCGGCGCGGACGCCGCCGTCCTGGCGGACT
TCGTCCTCCGGGCCATCGCGGAGGCGAAGAGCTGCGTGCAGGAAGGGGTC
AACGTCTGCTTGGACGCTGAGGGACGAGTGACGGCTCTATATGTCGGAAA
CGTCGGCGGCAAAACTAGCCACCGGAAGTTCCGCCGCGCCGCCAGCCACC
CCAACCAAAAGGAAGAAGACTTTCAAGCGCGCCCTCAAGGGAACCGTCGG
CGTTGGGCTGGCCGCCGCTTCCGCGGCGCTCATTGCCCGCTCCGACGACA
TCGGGGAGTGGTTGCAGTCCGTCGCGCCGCACGTTTTGCCGCACACGGTG
GTTGTGCCCGGCGGCGCGGACGCCGCCGTCCTGGCGGACTTCGTCCTCCG
GGCCATCGCGGAGGCGAAGAGCTGCGTGCAGGAAGGGGTCAACGTCTGCT
TGGACGCTGAGGGACGAGTGACGGCTCTATACACGTTTATTTCTCAGTGG
TACCTGAGCCCCAGGCAGCACGTGGTGGAGATGGCCCTCTCCATCCTCGT
CCTGTCCCCTCTTGTCTACCTCTACTACAAGCTCTGCCGAGCGCGGCTGA
GGCTCAAGCGCGCGGCGGGAGCCTTCGACGCGAAGAGACCAAGCCTCCTC
ATGAAGCTCTGGGGGGCGGCGCTGCTGGGGCTCGTCGGAGCAGGAGCGTT
CCTCAAGTTCACCAAGCAGGAGCTCATCTCGCACCCGGCGTACCTGTGGC
AGCCCTGCCACGTCCACAGCCTCGTCATGGGGCTGTGCGCCTTCGTGGAG
ACGGAGGGCTCGCTGCTGGTGATGCACGTGGCCACGACCCTTTGGTGGGG
ACCGTTCTTAGCGTTCGTGGCGCCCTCGCTGCCAACCGACCCCGTAGAGA
CACGTTTATTTCTCAGTGGTACCTGAGCCCCAGGCAGCACGTGGTGGAGA
TGGCCCTCTCCATCCTCGTCCTGTCCCCTCTTGTCTACCTCTACTACAAG
CTCTGCCGAGCGCGGCTGAGGCTCAAGCGCGCGGCGGGAGCCTTCGACGC
GAAGAGACCAAGCCTCCTCATGAAGCTCTGGGGGGCGGCGCTGCTGGGGC
TCGTCGGAGCAGGAGCGTTCCTCAAGTTCACCAAGCAGGAGCTCATCTCG
CACCCGGCGTACCTGTGGCAGCCCTGCCACGTCCACAGCCTCGTCATGGG
GCTGTGCGCCTTCGTGGAGACGGAGGGCTCGCTGCTGGTGATGCACGTGG
CCACGACCCTTTGGTGGGGACCGTTCTTAGCGTTCGTGGCGCCCTCGCTG
CCAACCGACCCCGTAGAGATCGCCATTTTCTGGGCGCAGCATGCCCTGAT
GCTACTAGCTCCGTTCCTTCGACTGACGGTGGGAACGCGGTGGCTGTACA
TCGCCATTTTCTGGGCGCAGCATGCCCTGATGCTACTAGCTCCGTTCCTT
CGACTGACGGTGGGAACGCGGTGGCTGTAC
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