mRNA_E-fasciculatus_F_contig1199.1546.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1199.1546.1
Unique NamemRNA_E-fasciculatus_F_contig1199.1546.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1199.1546.1 vs. uniprot
Match: D8LQ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84_ECTSI)

HSP 1 Score: 1115 bits (2885), Expect = 0.000e+0
Identity = 699/998 (70.04%), Postives = 716/998 (71.74%), Query Frame = 1 
Query:    1 MAVLNMDDPYEDDAAVKAQAVQSVAKLIKSSSQVHLNGAAGTDEAALQTLDETISEMSRRVLAWVECAAXXXXXXXXXXXXXXXXPHCSDGRRVFPPVLLTSCCRYMEALATAYPDRFSTDCRSLARPVASCVLAMTTMAKVHDSATGAEAPCGEANGEGEENEDGLLSRSGCAVTIEERNALELWVEMLGICLLPFCGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNRVSGDGKARSRWVAGWMRRAGVTLTEPLECPFDVQPGGRDEDLPVRLATLISYHAQAAAGASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXTASESHAAVVEETFSCLLCLSETAPESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLKILLTRSKSQGAKAYSTARSFCREALAAAVACARKLIGLAGAPVVMDDPRWFLETFVVKMTSPLLLGDAVGALRAASLAAGGMGTAAEGGEERGPDGSTPSGMETALREVILPGAVGRLVKALGSIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAAGEGRATGAGGGVEGDEKVRLCLRAIRRLGVAGXXXXXXXXXXXXA-GDVLAAASDREPAAAQPFAEAALEFTCGVVEREWVGKRGEGGQQEGGDGQESIITLVEAHVTLVALLRSPSMRVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSKRERHGGKRFCLGAGGMFCCAACVWCHDVLRSSFILHAGLLMWREVILSLAAKALSKGKLVLYIHSI*LLLYCKSPTAHREVYVEGLPSLHFYSVQLRTVLHPSLATVAKLRHVFLLSPVFRILEKEPFAALQLPLVV*LTPPPTCSLTTTACTTMSTPPLSAPPVLHFVRLFRP*YSVRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWIRSTR 2991
            MA+ +MDDPYEDDA VKAQAVQSVAK IKSSSQVHL GAAGTDEAA +TLDETISE SRRVLAWVECAA                PH SDGRRVFPPVLLTSCCRYMEALATAYP RFS DCRSLARPVASCVL MT  AK HDSA G   PC E  GEGEEN+DG  SRSG  +TIEERNALELWVEMLGICLLPFCGS G                                    XXXXXXXXXXXXXX   G+RVSGDGKARSRWVAGWMRRAG+TL EPLECPFDV+PGGRDED+PVRLATLISYHAQAAA ASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXT SESHA VVEE FSCLLCLSET PESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLK+LLTRSKSQGAK YSTARSFCREAL AAVACARKLIGL G  VVMDDPRWFLETFVVKM SPLLLGDAVGALRAASLAA GMGTAAEGGEERGPDGSTPSGMETALREV+LPGAVGRL+KALG+IDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAA  GRA+GAGGGVE DEKVRLCLRAIRRLG A XXXXXXXXXXX A GDVLAAASDREPAAAQ F EAALEFTCGVVEREWVGKRGE G+QEGGDGQESIITLVEAHVTLVALLRSPSM VPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSK                                                                                                                                                                                 +RFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSW+R TR
Sbjct:    1 MALRDMDDPYEDDATVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAAAAAA-----------PHSSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTRTAKAHDSAIGVAVPCRETKGEGEENDDGFPSRSGRTITIEERNALELWVEMLGICLLPFCGSGGGSRTTSRSGLGEATSGDDDNSRDPSGEHGDDPFDSDXXXXXXXXXXXXXX---GSRVSGDGKARSRWVAGWMRRAGITLAEPLECPFDVRPGGRDEDMPVRLATLISYHAQAAASASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXTPSESHALVVEEAFSCLLCLSETVPESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLKLLLTRSKSQGAKVYSTARSFCREALTAAVACARKLIGLVGGLVVMDDPRWFLETFVVKMASPLLLGDAVGALRAASLAARGMGTAAEGGEERGPDGSTPSGMETALREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGAAXXXXXXXXXXXXPAAGDVLAAASDREPAAAQQFTEAALEFTCGVVEREWVGKRGERGEQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVRLTR 807
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1199.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ84_ECTSI0.000e+070.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1199contigE-fasciculatus_F_contig1199:6926..14733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size3670
Cds size2544
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1199.1546.1prot_E-fasciculatus_F_contig1199.1546.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1199 8052..14733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.061424-UTR-E-fasciculatus_F_contig1199:6925..80511622927707.061424-UTR-E-fasciculatus_F_contig1199:6925..8051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1199 6926..8051 -
1695995659.314745-UTR-E-fasciculatus_F_contig1199:6925..80511695995659.314745-UTR-E-fasciculatus_F_contig1199:6925..8051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1199 6926..8051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.0789125-CDS-E-fasciculatus_F_contig1199:8051..85371622927707.0789125-CDS-E-fasciculatus_F_contig1199:8051..8537Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 8052..8537 -
1695995659.3248-CDS-E-fasciculatus_F_contig1199:8051..85371695995659.3248-CDS-E-fasciculatus_F_contig1199:8051..8537Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 8052..8537 -
1622927707.0953703-CDS-E-fasciculatus_F_contig1199:9458..97721622927707.0953703-CDS-E-fasciculatus_F_contig1199:9458..9772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 9459..9772 -
1695995659.3351963-CDS-E-fasciculatus_F_contig1199:9458..97721695995659.3351963-CDS-E-fasciculatus_F_contig1199:9458..9772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 9459..9772 -
1622927707.1132843-CDS-E-fasciculatus_F_contig1199:10422..105401622927707.1132843-CDS-E-fasciculatus_F_contig1199:10422..10540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 10423..10540 -
1695995659.3455744-CDS-E-fasciculatus_F_contig1199:10422..105401695995659.3455744-CDS-E-fasciculatus_F_contig1199:10422..10540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 10423..10540 -
1622927707.1307538-CDS-E-fasciculatus_F_contig1199:10755..111011622927707.1307538-CDS-E-fasciculatus_F_contig1199:10755..11101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 10756..11101 -
1695995659.3650053-CDS-E-fasciculatus_F_contig1199:10755..111011695995659.3650053-CDS-E-fasciculatus_F_contig1199:10755..11101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 10756..11101 -
1622927707.1471746-CDS-E-fasciculatus_F_contig1199:11381..114731622927707.1471746-CDS-E-fasciculatus_F_contig1199:11381..11473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 11382..11473 -
1695995659.3754022-CDS-E-fasciculatus_F_contig1199:11381..114731695995659.3754022-CDS-E-fasciculatus_F_contig1199:11381..11473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 11382..11473 -
1622927707.1618183-CDS-E-fasciculatus_F_contig1199:12024..122731622927707.1618183-CDS-E-fasciculatus_F_contig1199:12024..12273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 12025..12273 -
1695995659.3858464-CDS-E-fasciculatus_F_contig1199:12024..122731695995659.3858464-CDS-E-fasciculatus_F_contig1199:12024..12273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 12025..12273 -
1622927707.180059-CDS-E-fasciculatus_F_contig1199:12481..131281622927707.180059-CDS-E-fasciculatus_F_contig1199:12481..13128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 12482..13128 -
1695995659.3952405-CDS-E-fasciculatus_F_contig1199:12481..131281695995659.3952405-CDS-E-fasciculatus_F_contig1199:12481..13128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 12482..13128 -
1622927707.199279-CDS-E-fasciculatus_F_contig1199:13396..136371622927707.199279-CDS-E-fasciculatus_F_contig1199:13396..13637Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 13397..13637 -
1695995659.404683-CDS-E-fasciculatus_F_contig1199:13396..136371695995659.404683-CDS-E-fasciculatus_F_contig1199:13396..13637Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 13397..13637 -
1622927707.2144284-CDS-E-fasciculatus_F_contig1199:14682..147331622927707.2144284-CDS-E-fasciculatus_F_contig1199:14682..14733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 14683..14733 -
1695995659.4145381-CDS-E-fasciculatus_F_contig1199:14682..147331695995659.4145381-CDS-E-fasciculatus_F_contig1199:14682..14733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1199 14683..14733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1199.1546.1

>prot_E-fasciculatus_F_contig1199.1546.1 ID=prot_E-fasciculatus_F_contig1199.1546.1|Name=mRNA_E-fasciculatus_F_contig1199.1546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=848bp
MAVLNMDDPYEDDAAVKAQAVQSVAKLIKSSSQVHLNGAAGTDEAALQTL
DETISEMSRRVLAWVECAAAAAAAAAAAAAAAAAAPHCSDGRRVFPPVLL
TSCCRYMEALATAYPDRFSTDCRSLARPVASCVLAMTTMAKVHDSATGAE
APCGEANGEGEENEDGLLSRSGCAVTIEERNALELWVEMLGICLLPFCGS
SGGGSRTTTRSGVAGAASGDDDNSRDPSGEHDNDPFDSDEEEEEEEDGAD
DDQEEGNRVSGDGKARSRWVAGWMRRAGVTLTEPLECPFDVQPGGRDEDL
PVRLATLISYHAQAAAGASRPASVSSLTTVLAVLVAFTAAGADGEDGRDG
TASESHAAVVEETFSCLLCLSETAPESSAQAECVKAALVSLKECAQSARL
RCLEHRVPAALSMLEGVPSRLKILLTRSKSQGAKAYSTARSFCREALAAA
VACARKLIGLAGAPVVMDDPRWFLETFVVKMTSPLLLGDAVGALRAASLA
AGGMGTAAEGGEERGPDGSTPSGMETALREVILPGAVGRLVKALGSIDRY
SAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAAGEGRATGAGG
GVEGDEKVRLCLRAIRRLGVAGGGGGGTAGAAPAAGDVLAAASDREPAAA
QPFAEAALEFTCGVVEREWVGKRGEGGQQEGGDGQESIITLVEAHVTLVA
LLRSPSMRVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALA
DDDVMLLCQGLEVLEALEECSGEFFEGKRSKRERHGGKRFCLGAGGMFCC
AACVWCHDVLRSSFILHAGLLMWREVILSLAAKALSKGKLVLYIHSI*
back to top

mRNA from alignment at E-fasciculatus_F_contig1199:6926..14733-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1199.1546.1 ID=mRNA_E-fasciculatus_F_contig1199.1546.1|Name=mRNA_E-fasciculatus_F_contig1199.1546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7808bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1199:6926..14733- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGTGCTCAACATGGACGATCCATACGAAGATGATGCTGCGGTGAA
GGTATGTCGAAATGGACAAGAAAGTCATTCGTTTTCGTTCCCACTCCTGG
AAGAAACCGAGAGGACGGGAGGGCACAGCAGCAAAGACTGCTGCTTAGGC
ACATGGTATTGGGAGTGTGCCACATGCGGGCCAGACAGGCGTGCCATACT
CCAGCTGCAGACCGTGGGATGGTTGTGGGTGGTTCTCCTGCGTGTGTTTG
GCATCATTCATCTGCCCAGGCTCAATTCATCTACTGCCCACGCATGCCAC
TGATGCGGGCGCACTCGGAGGCTTGTAGGGACTGCTGTTGCACATACCGC
AGGAGGTTACCGCAGGAGGGGGTCCAGCCCCCGCCTCCTATGTGACCCGG
GTGGGTCGTCTAGCTAGTAGAAGTGGAGGATGGGGGCCACAGGGGCAGAC
GACAGAGTCCAATAATGGGAGAAAAGAAGTATATACAATGTATATATGCG
CCAGCAGTCGTTGTCCTTGATGGGCATGAGAGACCAATCCTCCTCCAGGA
CATTCCGTATCCAATCATTTTCAAACCTTGGGTGGGTGAGTGCAGGCTTT
TCCCGCCGTATATTGTACTGTCTCTCAAAGGGAACTGTCCGTGGGTCTAT
GTCTTGGCATCAGCTCCGGTCTCTCGTTAGTTTGGACGACAGCAAAGGTG
CGACCGACGGAGTCAAGTCCGAAAGTCGTCGACGTATGCATAGACTCCTG
CTGATACATTTTGTCTTCGGCGGCTTATTCTCGTGAAATGCAGTGTAGGA
GGCAACACCTGCAATGACTTACCTCGCCCAAGAAGTAAAGCATTTGTGGC
ACGCAATTCGCTGATTGGTCAACGCACCCACAAAATGTATCATAACACCT
TTGCTTCTGCTACTACATATGAGTGCAAAGAAGCCTCCTTTGCCTGTAGC
AATTGTTCTCTGTGGGCACGCCACCCCTTTCGCGTTTCCTGCCTCAACTT
CGACTTTCCGCCAAACAAACGATACAACCCGGCGGCAAATATCCACGTTT
TCGCTGCTCGCCACCCCCTTGAACCATGACTGGCCCCACCAACCAGGCAC
AGGCAGTCCAAAGCGTGGCCAAGCTAATCAAAAGCTCTAGCCAGGTTCAC
CTCAACGGCGCGGCTGGTACGGACGAGGCCGCTTTGCAAACGTTGGACGA
AACTATCAGTGAAATGTCGAGGAGGGTACTGGCATGGGTCGAGTGTGCAG
CAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCT
CCTCACTGCTCAGACGGACGACGAGTCTTCCCACCTGGTGTGTGTTGATG
CGGGAAGAGCCTTGTCGCGCGCTCGCTCGGTTTTGGCCACCGCCGTGCGC
ATGCTGGTGTTGCCGATTCTGCAGCAGTGCTCGGTGCTCGGTTGGGGATC
CTTGGTCGTGGAATCGGTGACCGCACGTCTCAGCAAGCACAGCACTTGCA
TCACTCTCTTGTACGAAACCGGGGCTTGGTCCATGTCCTTTCCAAAGGGG
TATCTACCGGTGTGGCTTAGCCCCCCCCCCTTCCGCCCCCCCGATTCCTC
CGCAGTTCTGCTGACCAGCTGCTGCAGGTACATGGAGGCGTTGGCAACAG
CATACCCGGATCGCTTCTCCACAGACTGCCGATCCCTCGCGAGGCCGGTC
GCTTCTTGCGTGCTGGCTATGACTACGATGGCAAAAGTGCACGATTCAGC
CACAGGAGCGGAAGCGCCGTGCGGGGAAGCCAATGGCGAGGGAGAGGAAA
ACGAAGATGGGCTTCTATCCAGAAGCGGGTGCGCCGTCACCATCGAGGAG
CGGAACGCTCTGGAGCTGTGGGTAGAGATGCTCGGGATCTGCTTGCTGCC
GTTCTGCGGCAGCAGCGGCGGCGGTAGCCGGACAACCACCCGAAGCGGTG
TCGCCGGGGCGGCTAGCGGCGACGACGACAACTCTCGCGACCCCAGCGGC
GAACACGACAATGATCCGTTTGATAGCGACGAGGAGGAGGAGGAAGAAGA
AGACGGTGCTGACGACGATCAAGAGGAGGGGAACCGGGTGTCGGGGGACG
GGAAGGCGAGATCGAGGTGGGTAGCTGGCTGGATGCGGCGCGCGGGCGTC
ACCCTCACCGAGCCGCTGGAGTGCCCGTTCGACGTGCAGCCCGGCGGGCG
AGATGAGGACCTGCCAGTTCGCCTGGCCACCCTCATATCTTACCACGCGC
AGGTGAGCTTTTGCTTCAGAGCCTTCTTGGCGTTGTCATATTCTTTGTGG
GTCAAGAGAGTAAACGGATTAAGCGAAAACCCCTACGAAGGGAACCTTGA
TATTTTTTTCTCGATTCTTTCGGAACCTCTACTGTACCGCTGCCCACCGG
CGTTTTCTCTGCCCAACCCCGCCAGACAATTCGCCCTTTCACGTGCCACC
CATCCTTCAGGCCGCTGCCGGTGCTTCTCGGCCCGCGTCGGTGTCCTCCC
TGACCACCGTCCTCGCCGTCCTCGTGGCCTTTACGGCGGCCGGCGCCGAT
GGAGAGGACGGGCGAGATGGCACTGCTTCTGAGAGCCACGCGGCGGTCGT
GGAAGAGACGTTTTCGTGCCTCCTGTGCTTGTCGGAAACGGCGCCGGAGA
GCAGCGCGCAGGCAGAGTGCGTCAAGGCAGCCCTCGTGTCGCTCAAGGAG
TGCGCGCAGGTGAGAAAGGAGAGGTGGTGCTCTGCCGGGCTCGCCCCTGT
TGCTGTTGCTACGTTCTCCGCACTTGATCGCGGCAGCACGTTTTTCCGCG
TTGGAGATCTGGTGGATTGGTTCGTTTGGCAGTGGTGCACTGGTGTGTGA
GGTTTGTGTGTATTTTGCACGCTGGCGGTCTGTTGATTGGTTCACTCGGC
TGTGATTGGCGGAGAGAGACGGAAAGAGAGACAGCGCGAAAACGAAGATT
TGAGTGTACCAGCACCGGCAAGGTCTACCTTATTATGTCTTCTACCCTCT
GGTACGTTTTTTTTTGTGTCTCAGGTTTGTCGAGAGTGTCAACAACGTCT
TTTCTCCAGAGAGCACACGAACGCGCCGCACGAGGAAGGTACGGAGCCGC
TCTATCCGACTTCGCGTACGCTATTTAGGTTGTATTTGCTACTGCACTGA
ACTTAAACGTTCTGAACGGTGCGTGCAAATGACTGGTCGACTGCTTCCTG
TGCTGCTTACCGCTGTGGATCTTGCGTCTGTTGTTCGGACACCCACCCTC
CTCGCCGAAGTCCGCGCGATTGCGTTGTCTGGAGCACCGAGTCCCGGCGG
CGTTGTCGATGCTGGAGGGCGTGCCTTCCAGACTGAAGATACTGCTGACT
AGGCGAGTGACACTGACGACCCGGTTCACGCTGCACAGGATGTTGATGCG
GTTGTCGTTTTTGTTTTTTGCCTGACATGGTGCAAGATGTTGTTGAATTT
TTTGGGTAGTTTTGCTTTGTTGTTGTTGTTCTTGTTGTTGTCACATTAAA
AACCACCCCGCATCAAGTGGTTTGCGTGTTCTGCTTCCTCATTACTGCTG
TCAAGCCTGCTGTCTCTCATCGTCCCGCGGCATGGTCTGATCTGTCCCGT
CGCCTTCCGACCTCCCCCGCGCCCGCCCCCAGATCCAAGAGCCAGGGGGC
GAAAGCCTACTCCACTGCACGGTCCTTCTGCCGCGAAGCCCTCGCCGCGG
CCGTCGCCTGCGCGCGCAAGTTGATTGGCCTGGCGGGGGCGCCCGTCGTG
ATGGACGACCCCCGGTGGTTCCTTGAAACGTTCGTCGTCAAGATGACCTC
GCCGTTGCTGTTGGGAGACGCCGTGGGGGCCTTGCGCGCGGCGTCTTTGG
CGGCCGGGGGGATGGGTACGGCTGCAGAGGGGGGGGAGGAACGGGGTCCA
GATGGGAGCACCCCATCCGGGATGGAAACTGCCCTTCGGGAAGTGATCCT
GCCGGGCGCCGTTGGGCGGCTCGTCAAGGTTAGCTTGCTGCTTTGGCGGT
AAAAGCGTGGATGGTATTGGCGGCGGTGCGATAGGATGAAGCCGATACCC
CTGGCAGCGGTCTGGTCAGAAGAATGCCTTCTTTTTGGTCGCCCATTCCT
TCACCTGCATGAGAGTCGCCCAGCCCAGCGCGCGAGAAAAAGATGCCTCA
CTAACCCGTCCATCCCACCGCCTTCCTCCTCGCCGCTCCGCAGGCCTTGG
GCAGCATAGACAGGTACAGCGCGGCGGCCGCGAAAGAGGTGCTCAAGGCG
ACGGCGTGGTTAGCTCGGGCGGCAGGCGCAGAAGAGATTCGGCCTCATCG
CAACCGTCTCGGTAAGGATGTGTTTTCTCTTGCGTTTTGTTCACCGCGTG
GTTTCCTCGCCCTTCCTGTCAACGGAGTCATCACTATTTCTTTGATTCGC
CTTTCTTTTCCCGGCCGCAATGCACGATATAGCGTTCGCGTGAAGAGCAA
GTATGTACCCCGCCAGCAAACGCAAGAGTGATGGCCAGCTTCTGGTGTAT
CCTTGTGAAACGTAGCCTGGGCCGGCGAAAACCCGGCATGTCGCTCCATC
CCGGCGTGTACGGATGCGGGGTCACGGTCTTACGATTACGGCAGCCGTTT
ATACGAGTAGTACCCCCCCCCCGGTCAGTCCCTGCGGAGAGGCCGTAGAA
GTTAAATCACAAGCCACGATGAACGAATATTATTTGGAGACGTTCCCTTC
AACACATCGTGCTGTTGAAGTTGCGTATCCCTCGAAGGTTGCTGTAGCGG
TGGTCGAGGGACGAGGATACGTTTCCGGCTTCACGACAAAGTGTTTACGA
GAACGAGGGCACTAGTCACTCCCCTCTCTGCTCGAAGTATCCAGTAGTGC
TGAATGTTGCATCATGTTCGGGCCTCTACGAAGCAACCGCCTTCTTTCGG
CGCCGTCCTGTTGTGCGGTAACGATTTTTCGCTATCGTTCCGCTGTCGCG
TGGCATGGCAGGGATGGCCTTGGTGGAGTGCGCCGCCGGCGAAGGCCGCG
CGACCGGCGCTGGGGGCGGCGTGGAGGGCGACGAAAAGGTCAGGCTTTGC
CTGCGAGCGATCCGTCGCCTTGGCGTGGCTGGTGGTGGTGGTGGTGGTAC
GGCCGGTGCTGCACCTGCGGCCGGCGATGTCCTCGCCGCAGCTAGCGATC
GAGAGCCTGCTGCGGCGCAACCGTTCGCCGAAGCTGCGCTGGAATTCACC
TGCGGAGTTGTAGAGAGGGAGTGGGTGGGGAAGCGCGGGGAGGGGGGGCA
GCAAGAAGGAGGCGACGGTCAGGAGGTGGGTAAACACTTGTCGAGTTGGC
TGCTACGGTAATGATGGGGGGGAGTTGGAGACGATTGCTTGTTGCTGTTG
TTGTATCTGACCTGTACAGTGTACAGCAGTACATTGCCTGCTGCTGTAGG
ATTTTAATGGGTACAGACTCGAACTTCTGTGGTACACGGTAACCCGATTT
CGATGGTGGGTTGTGGTTTGCGCTTCCGCCCCAAGCACGTGAGACGGAGC
GGGTTGTTGCACAGAGCGATAACCTTGGTTATGCACACGGTCGTCCTCAA
CTGTCCATCAATTAATCTAGCATGAGTGTTGTAGTGTTGTATCCTTTGTG
CAGTGCGGACGAACGCACAGGTGTACGATCGATTTCTACAGCTGAATCGC
TCCACAACCAGGAGGTTGCCAATGCCAAAGAGAGAGTTACTTTGAAAATA
TCTCATCGACAGAGATCCATCCCTACACGCGTCGGTCGGGTTTCGATGGC
ACCCTCTTACCCTCTTGCCCTTTCGGCTGTGGAGCAACCAATATTTTCAG
TAAGCGATCGCGCCAGTCCGAGTCCTCTCCTCTCGATTGTGGAGCAATCA
ATCTTTCAACCATCGATCGCGCCAATGTGAGTTTGCCACCACTTGTACCC
TAGAGACTCTGCTTCGTTCGCGTTTCTCGAGTTACCCCGGGCCCGGGCCA
GGTACGCTATGCCCCCTTCTGTCCTCCCCACGTGTTCCACTCTGCTCCGC
GACCTACCTGTCCCACGCTCCAGTCCATTCGATTTGGTCCTGATACATCC
CATCTCACGCTGCCCCACTTATTCTATCCAATTCCACCCCATTTCCACCC
TTTCCACCCCCTTTCTTTCCCAATTGTACCTTCTAATCCATCAAGTTCCA
CCCGATTCCTTCCTGTGCCACCCCGTTCCATCCCGTTCCGTCCCAGTCGA
TCATCACGCTCGTGGAAGCCCACGTGACCCTCGTCGCGCTGCTGAGGTCG
CCCAGCATGCGCGTTCCCGGTATCGGCCCGGACGGCGAGTGGCCTCCGGC
GGCTAAGCGCCTCGCCAAGCTGGCATGGGCGGTGGCCTACCGCGTCAGGA
AGGCGGCGGGGGCGGTGGAGTCTTCCATGGCTCTCGCCGACGATGACGTC
ATGCTGCTGTGCCAGGGCCTGGAGGTGCTGGAGGCTCTTGAGGAGTGCTC
GGGCGAGTTCTTCGAGGGAAAGCGGTCGAAACGTGAGCGCCACGGAGGAA
AGAGGTTTTGCTTGGGCGCCGGCGGCATGTTTTGCTGCGCTGCGTGTGTA
TGGTGCCATGATGTACTTCGGAGTAGTTTTATTCTTCACGCAGGACTGTT
GATGTGGAGAGAAGTCATACTTTCCCTTGCCGCGAAGGCTTTGTCGAAGG
GTAAACTCGTTTTGTATATACACAGCATTTGACTGCTGTTGTATTGTAAA
TCTCCAACAGCTCATAGAGAGGTTTACGTTGAGGGCCTCCCGTCCCTCCA
CTTTTATTCCGTTCAACTCAGGACAGTATTGCATCCCAGCCTGGCTACTG
TTGCAAAGCTTCGGCATGTATTTCTTCTTTCGCCCGTATTTCGTATTCTT
GAGAAAGAACCTTTCGCGGCATTACAACTACCACTTGTTGTTTGACTGAC
CCCCCCCCCCACCTGTAGTCTAACGACTACGGCGTGCACGACTATGAGTA
CCCCCCCCCTGTCCGCTCCTCCTGTGCTCCATTTCGTTCGGTTGTTTCGT
CCCTGATACTCAGTGCGGTTCTTCGAGGGAGATTTGTCCCCGGTTTTGAC
GACCCTCCGGGGCTGCCACGACAAGAATACCATGCACCCCGTTGTTTACG
ACGCATGCTCGTGGATTCGGTCAACGAGATAGAGGTAGTGTTGCTGCTGT
CTTGTCGGTAGTGTTGCTGCTGTCTTGTCGGTGGTGTTGCTGTTGTCTTG
TCGGTGGTGTTGCTGCTGTCTTGTCGGTGGTGTTGCTGCTGTCTTGTCGA
TAGTGTTGCTGTTGTCTTGTCGGTGGTGTTGCTGCTGTCTTGTCGATAGT
GTTGCTGTTGTCTTGTCGGTGGTGTTGCTGCTGTCATGGGGCTTGCTTGC
GTGTTGTTTTCTTAATTGATCCTTTGGAAGAGCCCCGTTCGTTCGTGTTG
TTCTTTAATTGTCCTTTTGGAACGAGCCCCGTTCGTGTTGTTGTTTGATT
GATCCTTGTCGGAAGAAAAGAAGACCCTGGTGGCTGCAAGGACGTTAATT
GTCTCGGAGTGAGTTCTTCTTGCCGTTCGAGACGACGCGAGTGCTTGGGT
GCCATAATAATGAATGCTAAGTAGGCGAGCCAGCTGTCTGCTTGTGGTTG
CCCTGGATGGTTTTAGCTAGCTGCGGGATCTTGTAAGCTCTGCCGGCAGA
CAAAGCGGTGTGTGTATGAAAAGATGAAAAGTGGTTGAGAGAGCGACGAG
CGAGAGAGCGCGGACATTGGGAATGGTGAACACGGATGGATATATTTGTG
TGTTGATCGTTGCCGCCGTCAAATGTACACGGCAGCATCCTTGCTACGAA
CAGGGGCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1199:6926..14733-

>mRNA_E-fasciculatus_F_contig1199.1546.1 ID=mRNA_E-fasciculatus_F_contig1199.1546.1|Name=mRNA_E-fasciculatus_F_contig1199.1546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5088bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1199:6926..14733- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGTGCTCAACATGGACGATCCATACGAAGATGATGCTGCGGTGAA
GATGGCGGTGCTCAACATGGACGATCCATACGAAGATGATGCTGCGGTGA
AGGCACAGGCAGTCCAAAGCGTGGCCAAGCTAATCAAAAGCTCTAGCCAG
GTTCACCTCAACGGCGCGGCTGGTACGGACGAGGCCGCTTTGCAAACGTT
GGACGAAACTATCAGTGAAATGTCGAGGAGGGTACTGGCATGGGTCGAGT
GTGCAGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCG
GCGGCTCCTCACTGCTCAGACGGACGACGAGTCTTCCCACCTGGCACAGG
CAGTCCAAAGCGTGGCCAAGCTAATCAAAAGCTCTAGCCAGGTTCACCTC
AACGGCGCGGCTGGTACGGACGAGGCCGCTTTGCAAACGTTGGACGAAAC
TATCAGTGAAATGTCGAGGAGGGTACTGGCATGGGTCGAGTGTGCAGCAG
CGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCTCCT
CACTGCTCAGACGGACGACGAGTCTTCCCACCTGTTCTGCTGACCAGCTG
CTGCAGGTACATGGAGGCGTTGGCAACAGCATACCCGGATCGCTTCTCCA
CAGACTGCCGATCCCTCGCGAGGCCGGTCGCTTCTTGCGTGCTGGCTATG
ACTACGATGGCAAAAGTGCACGATTCAGCCACAGGAGCGGAAGCGCCGTG
CGGGGAAGCCAATGGCGAGGGAGAGGAAAACGAAGATGGGCTTCTATCCA
GAAGCGGGTGCGCCGTCACCATCGAGGAGCGGAACGCTCTGGAGCTGTGG
GTAGAGATGCTCGGGATCTGCTTGCTGCCGTTCTGCGGCAGCAGCGGCGG
CGGTAGCCGGACAACCACCCGAAGCGGTGTCGCCGGGGCGGCTAGCGGCG
ACGACGACAACTCTCGCGACCCCAGCGGCGAACACGACAATGATCCGTTT
GATAGCGACGAGGAGGAGGAGGAAGAAGAAGACGGTGCTGACGACGATCA
AGAGGAGGGGAACCGGGTGTCGGGGGACGGGAAGGCGAGATCGAGGTGGG
TAGCTGGCTGGATGCGGCGCGCGGGCGTCACCCTCACCGAGCCGCTGGAG
TGCCCGTTCGACGTGCAGCCCGGCGGGCGAGATGAGGACCTGCCAGTTCG
CCTGGCCACCCTCATATCTTACCACGCGCAGTTCTGCTGACCAGCTGCTG
CAGGTACATGGAGGCGTTGGCAACAGCATACCCGGATCGCTTCTCCACAG
ACTGCCGATCCCTCGCGAGGCCGGTCGCTTCTTGCGTGCTGGCTATGACT
ACGATGGCAAAAGTGCACGATTCAGCCACAGGAGCGGAAGCGCCGTGCGG
GGAAGCCAATGGCGAGGGAGAGGAAAACGAAGATGGGCTTCTATCCAGAA
GCGGGTGCGCCGTCACCATCGAGGAGCGGAACGCTCTGGAGCTGTGGGTA
GAGATGCTCGGGATCTGCTTGCTGCCGTTCTGCGGCAGCAGCGGCGGCGG
TAGCCGGACAACCACCCGAAGCGGTGTCGCCGGGGCGGCTAGCGGCGACG
ACGACAACTCTCGCGACCCCAGCGGCGAACACGACAATGATCCGTTTGAT
AGCGACGAGGAGGAGGAGGAAGAAGAAGACGGTGCTGACGACGATCAAGA
GGAGGGGAACCGGGTGTCGGGGGACGGGAAGGCGAGATCGAGGTGGGTAG
CTGGCTGGATGCGGCGCGCGGGCGTCACCCTCACCGAGCCGCTGGAGTGC
CCGTTCGACGTGCAGCCCGGCGGGCGAGATGAGGACCTGCCAGTTCGCCT
GGCCACCCTCATATCTTACCACGCGCAGGCCGCTGCCGGTGCTTCTCGGC
CCGCGTCGGTGTCCTCCCTGACCACCGTCCTCGCCGTCCTCGTGGCCTTT
ACGGCGGCCGGCGCCGATGGAGAGGACGGGCGAGATGGCACTGCTTCTGA
GAGCCACGCGGCGGTCGTGGAAGAGACGTTTTCGTGCCTCCTGTGCTTGT
CGGAAACGGCGCCGGAGAGCAGCGCGCAGGCAGAGTGCGTCAAGGCAGCC
CTCGTGTCGCTCAAGGAGTGCGCGCAGGCCGCTGCCGGTGCTTCTCGGCC
CGCGTCGGTGTCCTCCCTGACCACCGTCCTCGCCGTCCTCGTGGCCTTTA
CGGCGGCCGGCGCCGATGGAGAGGACGGGCGAGATGGCACTGCTTCTGAG
AGCCACGCGGCGGTCGTGGAAGAGACGTTTTCGTGCCTCCTGTGCTTGTC
GGAAACGGCGCCGGAGAGCAGCGCGCAGGCAGAGTGCGTCAAGGCAGCCC
TCGTGTCGCTCAAGGAGTGCGCGCAGTCCGCGCGATTGCGTTGTCTGGAG
CACCGAGTCCCGGCGGCGTTGTCGATGCTGGAGGGCGTGCCTTCCAGACT
GAAGATACTGCTGACTAGTCCGCGCGATTGCGTTGTCTGGAGCACCGAGT
CCCGGCGGCGTTGTCGATGCTGGAGGGCGTGCCTTCCAGACTGAAGATAC
TGCTGACTAGATCCAAGAGCCAGGGGGCGAAAGCCTACTCCACTGCACGG
TCCTTCTGCCGCGAAGCCCTCGCCGCGGCCGTCGCCTGCGCGCGCAAGTT
GATTGGCCTGGCGGGGGCGCCCGTCGTGATGGACGACCCCCGGTGGTTCC
TTGAAACGTTCGTCGTCAAGATGACCTCGCCGTTGCTGTTGGGAGACGCC
GTGGGGGCCTTGCGCGCGGCGTCTTTGGCGGCCGGGGGGATGGGTACGGC
TGCAGAGGGGGGGGAGGAACGGGGTCCAGATGGGAGCACCCCATCCGGGA
TGGAAACTGCCCTTCGGGAAGTGATCCTGCCGGGCGCCGTTGGGCGGCTC
GTCAAGATCCAAGAGCCAGGGGGCGAAAGCCTACTCCACTGCACGGTCCT
TCTGCCGCGAAGCCCTCGCCGCGGCCGTCGCCTGCGCGCGCAAGTTGATT
GGCCTGGCGGGGGCGCCCGTCGTGATGGACGACCCCCGGTGGTTCCTTGA
AACGTTCGTCGTCAAGATGACCTCGCCGTTGCTGTTGGGAGACGCCGTGG
GGGCCTTGCGCGCGGCGTCTTTGGCGGCCGGGGGGATGGGTACGGCTGCA
GAGGGGGGGGAGGAACGGGGTCCAGATGGGAGCACCCCATCCGGGATGGA
AACTGCCCTTCGGGAAGTGATCCTGCCGGGCGCCGTTGGGCGGCTCGTCA
AGGCCTTGGGCAGCATAGACAGGTACAGCGCGGCGGCCGCGAAAGAGGTG
CTCAAGGCGACGGCGTGGTTAGCTCGGGCGGCAGGCGCAGAAGAGATTCG
GCCTCATCGCAACCGTCTCGGCCTTGGGCAGCATAGACAGGTACAGCGCG
GCGGCCGCGAAAGAGGTGCTCAAGGCGACGGCGTGGTTAGCTCGGGCGGC
AGGCGCAGAAGAGATTCGGCCTCATCGCAACCGTCTCGGGATGGCCTTGG
TGGAGTGCGCCGCCGGCGAAGGCCGCGCGACCGGCGCTGGGGGCGGCGTG
GAGGGCGACGAAAAGGTCAGGCTTTGCCTGCGAGCGATCCGTCGCCTTGG
CGTGGCTGGTGGTGGTGGTGGTGGTACGGCCGGTGCTGCACCTGCGGCCG
GCGATGTCCTCGCCGCAGCTAGCGATCGAGAGCCTGCTGCGGCGCAACCG
TTCGCCGAAGCTGCGCTGGAATTCACCTGCGGAGTTGTAGAGAGGGAGTG
GGTGGGGAAGCGCGGGGAGGGGGGGCAGCAAGAAGGAGGCGACGGTCAGG
AGGGATGGCCTTGGTGGAGTGCGCCGCCGGCGAAGGCCGCGCGACCGGCG
CTGGGGGCGGCGTGGAGGGCGACGAAAAGGTCAGGCTTTGCCTGCGAGCG
ATCCGTCGCCTTGGCGTGGCTGGTGGTGGTGGTGGTGGTACGGCCGGTGC
TGCACCTGCGGCCGGCGATGTCCTCGCCGCAGCTAGCGATCGAGAGCCTG
CTGCGGCGCAACCGTTCGCCGAAGCTGCGCTGGAATTCACCTGCGGAGTT
GTAGAGAGGGAGTGGGTGGGGAAGCGCGGGGAGGGGGGGCAGCAAGAAGG
AGGCGACGGTCAGGAGTCGATCATCACGCTCGTGGAAGCCCACGTGACCC
TCGTCGCGCTGCTGAGGTCGCCCAGCATGCGCGTTCCCGGTATCGGCCCG
GACGGCGAGTGGCCTCCGGCGGCTAAGCGCCTCGCCAAGCTGGCATGGGC
GGTGGCCTACCGCGTCAGGAAGGCGGCGGGGGCGGTGGAGTCTTCCATGG
CTCTCGCCGACGATGACGTCATGCTGCTGTGCCAGGGCCTGGAGGTGCTG
GAGGCTCTTGAGGAGTGCTCGGGCGAGTTCTTCGAGGGAAAGCGGTCGAA
ACGTGAGCGCCACGGAGGAAAGAGGTTTTGCTTGGGCGCCGGCGGCATGT
TTTGCTGCGCTGCGTGTGTATGGTGCCATGATGTACTTCGGAGTAGTTTT
ATTCTTCACGCAGGACTGTTGATGTGGAGAGAAGTCATACTTTCCCTTGC
CGCGAAGGCTTTGTCGAAGGGTAAACTCGTTTTGTATATACACAGCATTT
GATCGATCATCACGCTCGTGGAAGCCCACGTGACCCTCGTCGCGCTGCTG
AGGTCGCCCAGCATGCGCGTTCCCGGTATCGGCCCGGACGGCGAGTGGCC
TCCGGCGGCTAAGCGCCTCGCCAAGCTGGCATGGGCGGTGGCCTACCGCG
TCAGGAAGGCGGCGGGGGCGGTGGAGTCTTCCATGGCTCTCGCCGACGAT
GACGTCATGCTGCTGTGCCAGGGCCTGGAGGTGCTGGAGGCTCTTGAGGA
GTGCTCGGGCGAGTTCTTCGAGGGAAAGCGGTCGAAACGTGAGCGCCACG
GAGGAAAGAGGTTTTGCTTGGGCGCCGGCGGCATGTTTTGCTGCGCTGCG
TGTGTATGGTGCCATGATGTACTTCGGAGTAGTTTTATTCTTCACGCAGG
ACTGTTGATGTGGAGAGAAGTCATACTTTCCCTTGCCGCGAAGGCTTTGT
CGAAGGGTAAACTCGTTTTGTATATACACAGCATTTGA
back to top