prot_E-fasciculatus_F_contig11962.1530.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig11962.1530.1
Unique Nameprot_E-fasciculatus_F_contig11962.1530.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length313
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Match: D7FWK9_ECTSI (IBR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK9_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.530e-96
Identity = 229/322 (71.12%), Postives = 236/322 (73.29%), Query Frame = 0 
Query:    4 QVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEECGHRGRRPSIPSSPYALQPPSLPXXXXXXPRLLSP-SRRASAAAA-SHEADADAGANEDKTCQSCGSMRXXXXXXXXXXXXQSHRPKRHSVPRDAAAAGS-------GVGRKRRKGFAWSPRWLPHGRAAALDGTASGARDESRQRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEIDEKSATGGKEGGEQTEA---ASTAGTYAVGFRHRTCP 313
            +VARFYCAYCMRN+PGTSRRRFEGNGGCSHEFCK CLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGAC                                 LLS  SRRASAA A SHE DA AGANED TCQSCGS  XXXXXXXXXXXX SHR KRH VPRDAA AG+       G GRK RKGFAWSPRW PHGRA +LD TA+G            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PE+DEKSATG   G    EA   AS AGT+A G RHRTCP
Sbjct:   52 KVARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACXXXXXXXXXXXXXXXXXXXXXXXX---------LLSAISRRASAAXADSHEEDAGAGANEDNTCQSCGSTXXXXXXXXXXXXX-SHRQKRHPVPRDAATAGAARTAPGGGAGRKGRKGFAWSPRWSPHGRAPSLDRTATGGDXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPPEVDEKSATGAGVGAGDKEAEGAASAAGTHAAGLRHRTCP 356
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BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Match: A0A6H5KA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA60_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.090e-58
Identity = 141/240 (58.75%), Postives = 151/240 (62.92%), Query Frame = 0 
Query:    4 QVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMVGHHSLHPCPKF-----GEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEECGHRGRRPSIPSSPYALQPPSLPXXXXXXPRLLSPSRRASAAAA-SHEADADAGANEDKTCQSCGSMRXXXXXXXXXXXXQSHRPKRHSVPRDAAAA-------GSGVGRKRRKGFAWSPRWLPHGRAA-ALDGTASG 229
            ++ARFYCAYCMRN+PGTSRRRFEGNGGCSHEFCK CLEDYLFQRIMVGHHSLHPCPK      G  S  S     D  R V+   ++      +GLSGACEECGH                            L S S+RASAAAA SHE D DAGA ED TCQSCGS RXXXXXXXXXXXX        SVPRDAAAA       G G GR  RKGFAWSP W PH R   +LDGTA+G
Sbjct:    7 KIARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKVDSADQGTTSFASDVICGDPGRSVK---HQRPDTLQQGLSGACEECGHXXXXXXXXXXXXXXXXXXX--------LLSSLSQRASAAAADSHEEDTDAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXX-XSVPRDAAAAMAAGRAPGGGDGRTGRKGFAWSPMWSPHRRGTPSLDGTATG 234
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK9_ECTSI1.530e-9671.12IBR domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KA60_9PHAE1.090e-5858.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 4..95
e-value: 6.0E-12
score: 47.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 31..40
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 7..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11962contigE-fasciculatus_F_contig11962:2231..4203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11962.1530.1mRNA_E-fasciculatus_F_contig11962.1530.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig11962 2231..4203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig11962.1530.1 ID=prot_E-fasciculatus_F_contig11962.1530.1|Name=mRNA_E-fasciculatus_F_contig11962.1530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=313bp
PKTQVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMV
GHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEE
CGHRGRRPSIPSSPYALQPPSLPSPSSPSPRLLSPSRRASAAAASHEADA
DAGANEDKTCQSCGSMRRRHHHHHHNHHHQSHRPKRHSVPRDAAAAGSGV
GRKRRKGFAWSPRWLPHGRAAALDGTASGARDESRQRRNKQPDERQQQQQ
QQRQQQQRQQRRELSPEAAAASGADPPEIDEKSATGGKEGGEQTEAASTA
GTYAVGFRHRTCP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD