mRNA_E-fasciculatus_F_contig11898.1483.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11898.1483.1
Unique NamemRNA_E-fasciculatus_F_contig11898.1483.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11898.1483.1 vs. uniprot
Match: A0A6H5JDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP4_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.970e-54
Identity = 94/126 (74.60%), Postives = 95/126 (75.40%), Query Frame = -1 
Query:  207 RGGAHRSEGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSDGLVVCMSADEFASTPSDHVSKGHRPDYGYGNGAGVVAXXXXXXXXXXXXXXXXXXXAVCGGVCSHMAARHTGCCC 584
            RGGAHRSEGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSDGLVVCMSADEFASTPSDHVSKGHRPDY    GA  VA                    VCGG CSH+  RH G CC
Sbjct:  133 RGGAHRSEGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSDGLVVCMSADEFASTPSDHVSKGHRPDYCKCGGA--VARGASASCSPRKKKK-----VVCGGACSHVT-RHAGYCC 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11898.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDP4_9PHAE2.970e-5474.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11898contigE-fasciculatus_F_contig11898:1131..1714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11898.1483.1prot_E-fasciculatus_F_contig11898.1483.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11898 1237..1665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.9933417-UTR-E-fasciculatus_F_contig11898:1130..12361622927699.9933417-UTR-E-fasciculatus_F_contig11898:1130..1236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11898 1131..1236 +
1695995655.6362169-UTR-E-fasciculatus_F_contig11898:1130..12361695995655.6362169-UTR-E-fasciculatus_F_contig11898:1130..1236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11898 1131..1236 +
1622927700.017347-UTR-E-fasciculatus_F_contig11898:1665..17141622927700.017347-UTR-E-fasciculatus_F_contig11898:1665..1714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11898 1666..1714 +
1695995655.662594-UTR-E-fasciculatus_F_contig11898:1665..17141695995655.662594-UTR-E-fasciculatus_F_contig11898:1665..1714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11898 1666..1714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.0062275-CDS-E-fasciculatus_F_contig11898:1236..16651622927700.0062275-CDS-E-fasciculatus_F_contig11898:1236..1665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11898 1237..1665 +
1695995655.6454527-CDS-E-fasciculatus_F_contig11898:1236..16651695995655.6454527-CDS-E-fasciculatus_F_contig11898:1236..1665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11898 1237..1665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11898.1483.1

>prot_E-fasciculatus_F_contig11898.1483.1 ID=prot_E-fasciculatus_F_contig11898.1483.1|Name=mRNA_E-fasciculatus_F_contig11898.1483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
MSSQTNARVCVASFRVKLPPTRAPGSRTHPSRVSSNNPCAAPPCANTHHR
TPPSFSFEGYYRRRRRRRRRRRRQLRPRCRSRSPGDAPSRRGRRACWRTR
PPTCTPPGRRRWCTSPSGTSTGACSGTASTAGRASRSSGSRT*
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mRNA from alignment at E-fasciculatus_F_contig11898:1131..1714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11898.1483.1 ID=mRNA_E-fasciculatus_F_contig11898.1483.1|Name=mRNA_E-fasciculatus_F_contig11898.1483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11898:1131..1714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCCGCCCAACGTGGCCGCCGGCTGCTCCCGCTTCCGTGTGAATTTGCC
AACTTCTTGCGCAGGGCCAGCAAAGCCATAGTTTCAACACACACACAGTG
AGCGGCATGTCGAGCCAAACGAATGCACGCGTGTGTGTAGCTTCATTCCG
CGTGAAACTACCCCCGACTCGTGCCCCGGGGTCCCGAACCCACCCATCCC
GCGTCAGCAGCAACAACCCGTGTGCCGCGCCGCCATGTGCGAACACACAC
CACCGCACACCGCCTTCTTTTTCTTTCGAGGGCTACTACCGGCGGAGGCG
CCGCCGCCGCCGCCGCCGCCGGCGACAACTCCGGCCCCGTTGCCGTAGCC
GTAGTCCGGGCGATGCCCCTTCGAGACGTGGTCGGAGGGCGTGCTGGCGA
ACTCGTCCGCCGACATGCACACCACCAGGCCGTCGGAGGTGGTGTACATC
ACCCTCCGGAACCTCCACAGGTGCTTGCTCAGGAACAGCCAGCACCGCCG
GCAGGGCCTCGAGATCCTCAGGGAGTCGAACGTGAAGCGCACGTTCACGA
GGTCGAAGCCCTCCGAGCGGTGGGCGCCTCCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11898:1131..1714+

>mRNA_E-fasciculatus_F_contig11898.1483.1 ID=mRNA_E-fasciculatus_F_contig11898.1483.1|Name=mRNA_E-fasciculatus_F_contig11898.1483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11898:1131..1714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAGCCAAACGAATGCACGCGTGTGTGTAGCTTCATTCCGCGTGAA
ACTACCCCCGACTCGTGCCCCGGGGTCCCGAACCCACCCATCCCGCGTCA
GCAGCAACAACCCGTGTGCCGCGCCGCCATGTGCGAACACACACCACCGC
ACACCGCCTTCTTTTTCTTTCGAGGGCTACTACCGGCGGAGGCGCCGCCG
CCGCCGCCGCCGCCGGCGACAACTCCGGCCCCGTTGCCGTAGCCGTAGTC
CGGGCGATGCCCCTTCGAGACGTGGTCGGAGGGCGTGCTGGCGAACTCGT
CCGCCGACATGCACACCACCAGGCCGTCGGAGGTGGTGTACATCACCCTC
CGGAACCTCCACAGGTGCTTGCTCAGGAACAGCCAGCACCGCCGGCAGGG
CCTCGAGATCCTCAGGGAGTCGAACGTGAATGTCGAGCCAAACGAATGCA
CGCGTGTGTGTAGCTTCATTCCGCGTGAAACTACCCCCGACTCGTGCCCC
GGGGTCCCGAACCCACCCATCCCGCGTCAGCAGCAACAACCCGTGTGCCG
CGCCGCCATGTGCGAACACACACCACCGCACACCGCCTTCTTTTTCTTTC
GAGGGCTACTACCGGCGGAGGCGCCGCCGCCGCCGCCGCCGCCGGCGACA
ACTCCGGCCCCGTTGCCGTAGCCGTAGTCCGGGCGATGCCCCTTCGAGAC
GTGGTCGGAGGGCGTGCTGGCGAACTCGTCCGCCGACATGCACACCACCA
GGCCGTCGGAGGTGGTGTACATCACCCTCCGGAACCTCCACAGGTGCTTG
CTCAGGAACAGCCAGCACCGCCGGCAGGGCCTCGAGATCCTCAGGGAGTC
GAACGTGA
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