mRNA_E-fasciculatus_F_contig11876.1467.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11876.1467.1
Unique NamemRNA_E-fasciculatus_F_contig11876.1467.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11876.1467.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.980e-12
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 RRTTTMKTKRAGAMGILPILPIVLLALGGTLASAGWPFKGRKVHNEVHLTHAA 168
            RRTTTMKT  A  MGI+P+LPIVLLAL GT  SA + F+GR  HNE +L H A
Sbjct:    6 RRTTTMKTVTACTMGIVPVLPIVLLALSGTSVSARFAFRGRNAHNEGNLEHVA 58
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BLAST of mRNA_E-fasciculatus_F_contig11876.1467.1 vs. uniprot
Match: A0A6H5KHK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.270e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   49 MGILPILPIVLLALGGTLASAGWPFKGRKVHNEVHLTHAA 168
            MGI+PILPIVLLAL GT ASA + F+GR  HNE +L H A
Sbjct:    1 MGIVPILPIVLLALSGTSASASFTFRGRDAHNEGNLEHVA 40
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BLAST of mRNA_E-fasciculatus_F_contig11876.1467.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.200e-6
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   40 AGAMGILPILPIVLLALGGTLASAGWPFKGRKVHNEVHLT 159
            A AMG++PILPIVLLAL GT ASAG  F+G  V NE +L+
Sbjct:    3 AKAMGVVPILPIVLLALSGTPASAGSAFRGLNVRNEANLS 42
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BLAST of mRNA_E-fasciculatus_F_contig11876.1467.1 vs. uniprot
Match: D7G7F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 8.510e-6
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   25 MKTKRAGAMGILPILPIVLLALGGTLASAGWPFKGRKVHNEVHL 156
            MKT  AG MGI+PI   VLLAL GTLASAG  F G   HNE ++
Sbjct:    1 MKTMAAGTMGIVPI---VLLALSGTLASAGSAFSGSSAHNEGNV 41
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11876.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4E0_ECTSI5.980e-1264.15N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KHK8_9PHAE1.270e-867.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ0_9PHAE2.200e-665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F0_ECTSI8.510e-661.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11876contigE-fasciculatus_F_contig11876:2704..2877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_009990.1
Exons1
Model size174
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.3420877-UTR-E-fasciculatus_F_contig11876:2703..27271622927698.3420877-UTR-E-fasciculatus_F_contig11876:2703..2727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11876 2704..2727 +
1695995654.6359975-UTR-E-fasciculatus_F_contig11876:2703..27271695995654.6359975-UTR-E-fasciculatus_F_contig11876:2703..2727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11876 2704..2727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.3541-CDS-E-fasciculatus_F_contig11876:2727..28771622927698.3541-CDS-E-fasciculatus_F_contig11876:2727..2877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11876 2728..2877 +
1695995654.6452875-CDS-E-fasciculatus_F_contig11876:2727..28771695995654.6452875-CDS-E-fasciculatus_F_contig11876:2727..2877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11876 2728..2877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11876.1467.1prot_E-fasciculatus_F_contig11876.1467.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11876 2728..2877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11876.1467.1

>prot_E-fasciculatus_F_contig11876.1467.1 ID=prot_E-fasciculatus_F_contig11876.1467.1|Name=mRNA_E-fasciculatus_F_contig11876.1467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
MKTKRAGAMGILPILPIVLLALGGTLASAGWPFKGRKVHNEVHLTHAAS*
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mRNA from alignment at E-fasciculatus_F_contig11876:2704..2877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11876.1467.1 ID=mRNA_E-fasciculatus_F_contig11876.1467.1|Name=mRNA_E-fasciculatus_F_contig11876.1467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11876:2704..2877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATCGATGCAGGAGAACCACAACGATGAAGACAAAGAGGGCAGGGGCGAT
GGGGATCCTGCCTATCCTCCCTATCGTGCTACTTGCTCTCGGCGGAACGT
TGGCCTCCGCCGGCTGGCCTTTCAAGGGCAGGAAGGTTCACAACGAGGTA
CATTTAACGCATGCTGCCTCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11876:2704..2877+

>mRNA_E-fasciculatus_F_contig11876.1467.1 ID=mRNA_E-fasciculatus_F_contig11876.1467.1|Name=mRNA_E-fasciculatus_F_contig11876.1467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11876:2704..2877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACAAAGAGGGCAGGGGCGATGGGGATCCTGCCTATCCTCCCTAT
CGTGCTACTTGCTCTCGGCGGAACGTTGGCCTCCGCCGGCTGGCCTTTCA
AGGGCAGGAAGGTTCACAACGAGGTACATTTAACGCATGCTGCCTCTTGA
ATGAAGACAAAGAGGGCAGGGGCGATGGGGATCCTGCCTATCCTCCCTAT
CGTGCTACTTGCTCTCGGCGGAACGTTGGCCTCCGCCGGCTGGCCTTTCA
AGGGCAGGAAGGTTCACAACGAGGTACATTTAACGCATGCTGCCTCTTGA
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