mRNA_E-fasciculatus_F_contig1175.1382.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1175.1382.1
Unique NamemRNA_E-fasciculatus_F_contig1175.1382.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1175.1382.1 vs. uniprot
Match: D8LRI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.200e-25
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 MGSKFSSAQRSKAHQGETTKDYEERKKSRQQRLKESEAKWKAAQEKTQSSSPPPNRGGKR 180
            MGSK SSAQRSK HQ ETTKDYEERKKSRQQRLKESEAKWKAAQEKTQSS PPPNRGGKR
Sbjct:    1 MGSKLSSAQRSKTHQAETTKDYEERKKSRQQRLKESEAKWKAAQEKTQSS-PPPNRGGKR 59
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1175.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI7_ECTSI3.200e-2593.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1175contigE-fasciculatus_F_contig1175:3656..6380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004690.1
Exons2
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.2775824-CDS-E-fasciculatus_F_contig1175:3655..37721622927688.2775824-CDS-E-fasciculatus_F_contig1175:3655..3772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1175 3656..3772 -
1695995649.8644304-CDS-E-fasciculatus_F_contig1175:3655..37721695995649.8644304-CDS-E-fasciculatus_F_contig1175:3655..3772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1175 3656..3772 -
1622927688.3118024-CDS-E-fasciculatus_F_contig1175:6314..63801622927688.3118024-CDS-E-fasciculatus_F_contig1175:6314..6380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1175 6315..6380 -
1695995649.874374-CDS-E-fasciculatus_F_contig1175:6314..63801695995649.874374-CDS-E-fasciculatus_F_contig1175:6314..6380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1175 6315..6380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1175.1382.1prot_E-fasciculatus_F_contig1175.1382.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1175 3656..6380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1175.1382.1

>prot_E-fasciculatus_F_contig1175.1382.1 ID=prot_E-fasciculatus_F_contig1175.1382.1|Name=mRNA_E-fasciculatus_F_contig1175.1382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
MGSKFSSAQRSKAHQGETTKDYEERKKSRQQRLKESEAKWKAAQEKTQSS
SPPPNRGGKR*
back to top

mRNA from alignment at E-fasciculatus_F_contig1175:3656..6380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1175.1382.1 ID=mRNA_E-fasciculatus_F_contig1175.1382.1|Name=mRNA_E-fasciculatus_F_contig1175.1382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2725bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1175:3656..6380- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAAGCAAATTCTCCTCTGCGCAACGCTCCAAGGCACACCAGGGGGA
GACCACCAAAGACTACGTGAGTACCGGATGGAGTTGATGATGAGTGCCTC
TCTCTTCCTTGCTTTCTTGTAGTTGGACATCGCGCTGTACTTGTACTTCG
TCTCTTTGGCGAACAGCAGCGACATTCCACACGCCATTCGAACATCTACC
TACACCGTGCGATCTTGACTGCTGTGACAGAAGATCTGCAGTACATAAAG
ACCACGAGAAGGTATGTTTATGTTGCCATGGTTGCGATGTTGCGATGGTT
TCCATGGTTGCGTTTCCGTACAACGACACAAGATAACACACCCTTGGCAC
TTGGCACCCCGGAGACAACATCGCCTTTTTTTTTTTAGCCCTGGTGATAC
AGAGTGCAGGTCGCGGCAGGCCATGAAGGGTGAGTGATACCCTACGGGGT
ATTTGATAACACTGCCGCGTTTGCATGTGTTTTACTGATACCCCACTGAC
TACAGCGCAGTACAGCAGTGTTGTGAAGTTATTTTCTCCGAGCAACAACT
TGCTACATATCATACGGGAACGGGGGGCGATGCATAGCAGAGAACGGGTA
CGTAGTAGTCCTTGCCTGTCTTTTTTTTTGCTAATACCAAAGGGGAGGTG
ATAGCTACATGACCCCGACAATGAACACGAGCAGCAGTCGCTCTACAACA
GCGAAGAAAGTTCTGCCCTGTACTGAGCAACAATTCCATTGATGACAACC
GCCTGGCACAGCAGTAGACTTGCCAAGAAGGCGGAGGGCAAATAAAACTT
GGTTTGTTCGCGGTGAAGAATCGTGCGCGTTGGTATTTCGGCTCCTGGTG
TCAGACCCAACAACTTGTTTAGCACCGGGTGTATTCTGTGGGGTGTCTTG
TGGTTTTGTGCGTGTATGGCACTCTGCTTGTAGCAGTCAGTTTTCTCCCA
GTCCTTCCTTTTTTTCCTCCGAGAAAGCGAGGAAACGCCAACTTCATGGG
GTTTCCAGCCCTGACACTGCAACCGTCTCTCCATATCGTGTCTGCATTTG
CTGTACATACAAGCGCACTCGTCGCGGGTGTAGACTATACAGTAGTCGAA
GCAACAGAACGCTAACAACGCCCGGAAGTCATAGACGCTTTCCGAGCGGC
TCGTACGTTACTGGTGGTTCAACGATTCGTTGCATCCAGGCACCAGGCAC
TCCGTGGATCTACATCATCAACAGTGTGCAGCAGTATCCATGTCCGTAGA
TGACTTGGTTCGAGGCACCTCAGCTAAATTCCTCACGAGACCTTGTTCAC
AGTACTCGAGAACGGTGCGCAACTACAAATGGGATTAGATCCAACTACAG
CTGTGTTACAACTTGCTACTTGAGCATTAGCATTTGCTTTCCTAAGTCGT
TCATCCGATTTGTTTACCCCGTCGCTCGCATTGCTTTGCTCATCAAAGGC
GTGCCTCCCGGACTGACTGGCTCAAGAGCTCCGATCCAAGGTTTCGTAGA
TATCCTCTGCGGCGCATGCCGCAGTACATCAGTACGTTTTTTGTTTTGCC
CCCGGAAATGTTTTTAGCCGCTGTTCCCTCTCAAGTGAGCACATGCAAGC
ACACACCGCCGCCCCCCTTACACGGTCGTTGTGACACAATAATATCATGC
CACCGGCTGTTGGAATGCCGACCCAGTGCACGTAAAAGCCGAAGCCCCGA
CAGAAAAGAGGAATTGTAGAGTAAATAGATCACTGCGCATCCTTGCCCAC
GCCGGATGGAATACTCGTGATAGTAGTGTTGTCCAGGGCCGTTGGTGGTG
CTTATTATAGTGAGTGGCGAGCAAGGCGACCCGGCAGTGACTGCTGTGCA
CTCTCTCGAGGAAGGTTTACTAAATAAGTTGCACCTTATTCTGAGCAAGC
TAGCATAAAGCCCTTGACGCTGTGGCTGATGTCGGTGGTGTCGCTTAGAC
CGCGACTTCTTGTTTCTGGCGGAGCACGTCGCACGGTCGTCCCGCATAGC
TTTTTGGAGCCCATTCCTCTCCTAAACTACCAGTCAAGCACATTGCCTGC
AGCATGCCGTACACAATTATCGCCAAGACTTATGCGGCAAAAACAGCAAT
AGCATTCCTGCGCAGGAAGAAATGTGCAACTGCTGTGGTCGAAAGCAAGA
TTTAGGATGCCACAGCAGTCAGTTGTGTGCATAAACGATGTTTACCCGAT
ACGAAGACCGTCATACTCTCTGTTGTTGGTCACGCGGAGGGTGCGATCCT
ACATGTGTCGACCTTAAAATAGACAGCTTTGTTGCCGCAGTGCTCTTCTG
TTTTCGTATCTCTCCTGCGAACACGTTCTCGGCACTATAGTACCAAGCTT
CTGGAGCTGTCGCCCAAGGAAACCAGTGAAAGCAGCAACCTTTTTTGCCG
CGTCGCCTGTTGGACACCCGCCTGATCGATTGTACATGACACAGCAGTTG
TTTTCGCTCGTCGTGCGGATCGCTGTGCGACTGCTGTCTGTAGAGCGCAC
GTTTCGCAGCCGCTGCAATGCGCTTGACCAAACAGCCCAGGCTTGTATTG
CGTGAGATCTTTGCTGTTAGCTCATCTGCGGTGCATGGCCTTTCACGTGC
ACTGGCAGGAGGAACGAAAGAAGAGCCGGCAGCAGAGGCTCAAGGAGTCG
GAGGCAAAGTGGAAGGCGGCCCAAGAAAAGACGCAGTCCTCTTCCCCTCC
GCCCAACAGGGGTGGAAAGCGATGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1175:3656..6380-

>mRNA_E-fasciculatus_F_contig1175.1382.1 ID=mRNA_E-fasciculatus_F_contig1175.1382.1|Name=mRNA_E-fasciculatus_F_contig1175.1382.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1175:3656..6380- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAAGCAAATTCTCCTCTGCGCAACGCTCCAAGGCACACCAGGGGGA
GACCACCAAAGACTACATGGGAAGCAAATTCTCCTCTGCGCAACGCTCCA
AGGCACACCAGGGGGAGACCACCAAAGACTACGAGGAACGAAAGAAGAGC
CGGCAGCAGAGGCTCAAGGAGTCGGAGGCAAAGTGGAAGGCGGCCCAAGA
AAAGACGCAGTCCTCTTCCCCTCCGCCCAACAGGGGTGGAAAGCGATGAG
AGGAACGAAAGAAGAGCCGGCAGCAGAGGCTCAAGGAGTCGGAGGCAAAG
TGGAAGGCGGCCCAAGAAAAGACGCAGTCCTCTTCCCCTCCGCCCAACAG
GGGTGGAAAGCGATGA
back to top