mRNA_E-fasciculatus_F_contig11747.1380.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11747.1380.1
Unique NamemRNA_E-fasciculatus_F_contig11747.1380.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: D7FMA2_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA2_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 3.260e-96
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 1 
Query:   19 LAEEGEAGGGGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            L EEGE GG  APSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFA+TVEELHAYVDPKTGRQAGYISDEVHEIVMKNR++IDAEVKHERDFS DFFGFK  E
Sbjct:  161 LLEEGERGG--APSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFADTVEELHAYVDPKTGRQAGYISDEVHEIVMKNRDLIDAEVKHERDFSLDFFGFKTLE 324
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A7Y2A0E8_9FLAO (Ribonucleoside-diphosphate reductase subunit alpha (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y2A0E8_9FLAO)

HSP 1 Score: 191 bits (484), Expect = 1.520e-57
Identity = 91/152 (59.87%), Postives = 120/152 (78.95%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            M VVKR G+RE V FDKITARI++LC+GL++ YI+P+ + +KV+QG+Y GVTT ELD LAAET A M T HP YA LAARI+VSNL + T  SF+ETVE L+ YVDPKTG+ AG IS E ++IV +N +++++ + ++RD+SFDFFGFK  E
Sbjct:    1 MQVVKRSGKRETVSFDKITARIKKLCYGLEQNYIEPIEIGKKVIQGLYDGVTTTELDNLAAETAATMATSHPDYALLAARIAVSNLHKNTKKSFSETVEGLYNYVDPKTGKNAGLISQETNDIVQRNEDILNSAIIYDRDYSFDFFGFKTLE 152
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A835YSZ4_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ4_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.850e-56
Identity = 102/152 (67.11%), Postives = 118/152 (77.63%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            MHVVKRDGR EP  FDKI  R+RRLC GLDER+IDPVLVAQKV QGIYSGV   E+DTLAAETCAYM  +HP Y+RLAARISVS L R T  SF     +LHAY DPKTG  AG +SDEV+ IV+++RE I+A++ + RDF FD+FGFK  E
Sbjct:    1 MHVVKRDGRTEPASFDKIVTRVRRLCNGLDERHIDPVLVAQKVAQGIYSGVGAAEIDTLAAETCAYMCADHPDYSRLAARISVSALHRDTHASFGAAAAQLHAYRDPKTGMAAGLLSDEVYRIVVEHREEIEAQIDYSRDFDFDYFGFKTLE 152
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BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: K8Z7A2_NANGC (Ribonucleoside-diphosphate reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7A2_NANGC)

HSP 1 Score: 202 bits (513), Expect = 2.500e-55
Identity = 99/157 (63.06%), Postives = 124/157 (78.98%), Query Frame = 1 
Query:   46 GGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            G AP MHVVKRDGRREPV FDKIT R+R LC GL+  Y+DP  VAQKVVQG+Y+GV+T ELD LAAET AY+N +HP YARLAAR+SVSNL + T+PSF++T+ +L+ +VDP TG  AG+IS+EV  +V  +   +DA V+HERD+ FD+FGFK  E
Sbjct:  125 GEAPYMHVVKRDGRREPVAFDKITKRLRSLCKGLNTDYVDPGRVAQKVVQGMYNGVSTAELDNLAAETAAYLNIDHPDYARLAARVSVSNLHKETNPSFSQTMRQLYDHVDPATGHAAGFISEEVMALVAAHGPTLDAAVRHERDYFFDYFGFKTME 281
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A362XCZ2_9BACT (Ribonucleoside-diphosphate reductase subunit alpha (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A362XCZ2_9BACT)

HSP 1 Score: 185 bits (469), Expect = 3.610e-55
Identity = 89/152 (58.55%), Postives = 119/152 (78.29%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            MHVVKRDGR+EPVMFDKIT RIR+LC+GL    +DPV VA +V+ G+Y GVTT ELD LAAE  A M T HP +A+LAARISVSNL + T  SF+ET+++L+ YV+P+TG++   +SDEVH+++M N E +D+ + ++RDF +D+FGFK  E
Sbjct:    1 MHVVKRDGRQEPVMFDKITTRIRKLCYGLSP-LVDPVKVAMRVIDGLYDGVTTSELDNLAAEVAATMTTTHPDFAQLAARISVSNLHKNTKKSFSETMDDLYKYVNPRTGKKGPLLSDEVHKVIMDNAEKLDSCIIYDRDFGYDYFGFKTLE 151
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BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A6U8K7B8_EMIHU (Ribonucleoside-diphosphate reductase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8K7B8_EMIHU)

HSP 1 Score: 198 bits (503), Expect = 2.190e-54
Identity = 92/153 (60.13%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:   58 SMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            SMHV+KRDGRREPVMFDKITARI++LC+G D +YIDP ++  KV+QG+Y GV+T  LD LAAET AY+ T+HP +++LAARI+VSNL + T  SF+ T+++LH YV+P+TG  A  ISDEVH I+  NRE +D  + ++RDF +DFFGFK  E
Sbjct:   13 SMHVIKRDGRREPVMFDKITARIKKLCYGFDPKYIDPTVITIKVIQGVYDGVSTTALDDLAAETAAYLTTQHPDWSKLAARIAVSNLHKMTDKSFSATMDKLHKYVNPRTGADAPLISDEVHSIIQDNRERLDPLLVYDRDFEYDFFGFKTLE 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A7S2CH04_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CH04_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 3.990e-54
Identity = 91/155 (58.71%), Postives = 117/155 (75.48%), Query Frame = 1 
Query:   52 APSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            A S+ V+KRDGRRE VMFDKITARI +L +GLD + I P L+ QKV+QG+Y GVTT  LD LAAET AY+ T+HP YARLAARISVSNL + T  +FA  +  L++YV+PK  ++A  IS+EVHEIV  N E ++A + ++RDF +D+FGFK  E
Sbjct:   14 AMSLSVLKRDGRRELVMFDKITARIAKLAYGLDPKVISPTLITQKVIQGVYDGVTTTALDDLAAETAAYLTTQHPDYARLAARISVSNLHKMTDKNFAAVMSALYSYVNPKNKQKAPLISEEVHEIVQANAERLNAAIIYDRDFEYDYFGFKTLE 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A7Y1XKN2_9FLAO (Ribonucleoside-diphosphate reductase subunit alpha (Fragment) n=1 Tax=Eudoraea sp. TaxID=1979955 RepID=A0A7Y1XKN2_9FLAO)

HSP 1 Score: 182 bits (462), Expect = 6.610e-54
Identity = 86/152 (56.58%), Postives = 122/152 (80.26%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            M+VVKRDGR+EP+MFDKITAR+R+LC+GL++  +DPV VA +V++G+Y GVTT ELD LAAE  A + T HP YA+LAARISVSNL + T  SF+ET+++L+ YV+P+TG++A  +SDEV +++ +N E +D+ + + RDF +D+FGFK  E
Sbjct:    1 MYVVKRDGRKEPMMFDKITARVRKLCYGLND-LVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTAHPDYAKLAARISVSNLHKNTKKSFSETMKDLYEYVNPRTGKKAPLLSDEVFKVISENAEKLDSTIIYNRDFGYDYFGFKTLE 151
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A2E4HHZ8_9BACT (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A2E4HHZ8_9BACT)

HSP 1 Score: 183 bits (464), Expect = 4.000e-53
Identity = 85/152 (55.92%), Postives = 121/152 (79.61%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            M+VVKRDGR+EPVMFDKITAR+++LC+GL + ++DPV ++ +V++G+Y GVTT ELD LAAET A M T HP YA+LAARISVSNL + T  SF+E + +L+ YV+P+TG +A  I+DEV++++  N++ ID+ + + RDF +D+FGFK  E
Sbjct:    1 MYVVKRDGRQEPVMFDKITARVKKLCYGLSD-FVDPVKISMRVIEGLYDGVTTSELDNLAAETAASMTTTHPDYAKLAARISVSNLHKNTKKSFSEVMTDLYEYVNPRTGNKAPLIADEVYKVIQDNKDAIDSMIIYNRDFGYDYFGFKTLE 151
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Match: A0A4Q3C1Y7_9SPHI (Ribonucleoside-diphosphate reductase subunit alpha (Fragment) n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3C1Y7_9SPHI)

HSP 1 Score: 179 bits (455), Expect = 6.610e-53
Identity = 86/152 (56.58%), Postives = 120/152 (78.95%), Query Frame = 1 
Query:   61 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFAETVEELHAYVDPKTGRQAGYISDEVHEIVMKNREVIDAEVKHERDFSFDFFGFKVSE 516
            M VVKRDG+REPVMFDKIT R+R+LC+GL++  +DPV VA +V++G+Y GVTT ELD LAAET A M   HP YA+LAARI+VSNL + T  SF+ET+ +++ YV+P+TG+++  +SDEV+E +M N E +D+ + + RDF++D+FGFK  E
Sbjct:    1 MFVVKRDGKREPVMFDKITDRVRKLCYGLND-LVDPVKVAMRVIEGLYDGVTTSELDNLAAETAASMTISHPDYAQLAARIAVSNLHKNTKKSFSETMYDMYHYVNPRTGQESPLLSDEVYEAIMANAEKLDSTIIYNRDFNYDYFGFKTLE 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11747.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMA2_ECTSI3.260e-9693.98Ribonucleoside-diphosphate reductase n=2 Tax=Ectoc... [more]
A0A7Y2A0E8_9FLAO1.520e-5759.87Ribonucleoside-diphosphate reductase subunit alpha... [more]
A0A835YSZ4_9STRA1.850e-5667.11Ribonucleoside-diphosphate reductase n=1 Tax=Tribo... [more]
K8Z7A2_NANGC2.500e-5563.06Ribonucleoside-diphosphate reductase n=3 Tax=Monod... [more]
A0A362XCZ2_9BACT3.610e-5558.55Ribonucleoside-diphosphate reductase subunit alpha... [more]
A0A6U8K7B8_EMIHU2.190e-5460.13Ribonucleoside-diphosphate reductase n=1 Tax=Emili... [more]
A0A7S2CH04_9EUKA3.990e-5458.71Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7Y1XKN2_9FLAO6.610e-5456.58Ribonucleoside-diphosphate reductase subunit alpha... [more]
A0A2E4HHZ8_9BACT4.000e-5355.92Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
A0A4Q3C1Y7_9SPHI6.610e-5356.58Ribonucleoside-diphosphate reductase subunit alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11747contigE-fasciculatus_F_contig11747:2..3959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FMA2
Preferred nameRNR1
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046939,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
EC1.17.4.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonucleotide reductase, class I , alpha subunit
Ec32 orthologEc-17_003700.3
Exons6
Model size864
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.0744827-UTR-E-fasciculatus_F_contig11747:1..1871622927688.0744827-UTR-E-fasciculatus_F_contig11747:1..187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2..187 +
1695995649.7658904-UTR-E-fasciculatus_F_contig11747:1..1871695995649.7658904-UTR-E-fasciculatus_F_contig11747:1..187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2..187 +
1622927688.0924156-UTR-E-fasciculatus_F_contig11747:1542..17731622927688.0924156-UTR-E-fasciculatus_F_contig11747:1542..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 1543..1773 +
1695995649.7794948-UTR-E-fasciculatus_F_contig11747:1542..17731695995649.7794948-UTR-E-fasciculatus_F_contig11747:1542..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 1543..1773 +
1622927688.1030173-UTR-E-fasciculatus_F_contig11747:2696..28301622927688.1030173-UTR-E-fasciculatus_F_contig11747:2696..2830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2697..2830 +
1695995649.7893484-UTR-E-fasciculatus_F_contig11747:2696..28301695995649.7893484-UTR-E-fasciculatus_F_contig11747:2696..2830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2697..2830 +
1622927688.1137817-UTR-E-fasciculatus_F_contig11747:2851..29081622927688.1137817-UTR-E-fasciculatus_F_contig11747:2851..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2852..2908 +
1695995649.800249-UTR-E-fasciculatus_F_contig11747:2851..29081695995649.800249-UTR-E-fasciculatus_F_contig11747:2851..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 2852..2908 +
1622927688.1254904-UTR-E-fasciculatus_F_contig11747:3065..30971622927688.1254904-UTR-E-fasciculatus_F_contig11747:3065..3097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 3066..3097 +
1695995649.807788-UTR-E-fasciculatus_F_contig11747:3065..30971695995649.807788-UTR-E-fasciculatus_F_contig11747:3065..3097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11747 3066..3097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.1369374-CDS-E-fasciculatus_F_contig11747:3097..32591622927688.1369374-CDS-E-fasciculatus_F_contig11747:3097..3259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11747 3098..3259 +
1695995649.8160276-CDS-E-fasciculatus_F_contig11747:3097..32591695995649.8160276-CDS-E-fasciculatus_F_contig11747:3097..3259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11747 3098..3259 +
1622927688.1483233-CDS-E-fasciculatus_F_contig11747:3899..39591622927688.1483233-CDS-E-fasciculatus_F_contig11747:3899..3959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11747 3900..3959 +
1695995649.8249028-CDS-E-fasciculatus_F_contig11747:3899..39591695995649.8249028-CDS-E-fasciculatus_F_contig11747:3899..3959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11747 3900..3959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11747.1380.1prot_E-fasciculatus_F_contig11747.1380.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11747 3098..3959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11747.1380.1

>prot_E-fasciculatus_F_contig11747.1380.1 ID=prot_E-fasciculatus_F_contig11747.1380.1|Name=mRNA_E-fasciculatus_F_contig11747.1380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
MDRVHTCHICVIALTRFVQTLERAYLLKLGDKVMERPQYMFMRIAIGIHG
EDLKLFLAHHEGRQHLRHLRHPQA
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mRNA from alignment at E-fasciculatus_F_contig11747:2..3959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11747.1380.1 ID=mRNA_E-fasciculatus_F_contig11747.1380.1|Name=mRNA_E-fasciculatus_F_contig11747.1380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3958bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11747:2..3959+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGAGGAGGCGTTTTCGTTGGCGGAGGAGGGGGAGGCGGGGGGAGGGGG
GGCGCCGTCGATGCACGTGGTGAAGCGGGACGGTCGCCGCGAGCCCGTCA
TGTTCGACAAGATTACGGCCCGCATCCGGCGGCTGTGCTGGGGGCTTGAC
GAGCGCTACATCGACCCGGTCCTCGTGGCGCAGAAGGTGACTTGACCCAG
CAACCGCCTGAGGACCGCCTTAGCGGGGAAGGAAATGAAGTACTATTTAG
TATTATTAGGAAAAATAACCGGAAGGGGATATGCAGACCGTATTCCCCTT
ACCCAATTTTCCCCGTTTGTCATGCTTTATCCAACATATTCCCTGAATAC
GAAAAAACTGCGAAGGCTACTGCCACCTGGCTGCCTCTGTTATCCTCTCA
CTCGCCCATTCATTTTGTTCACGAAGCTTTTAATCTCTCTTTGCTGAGGC
CTTTCGGGTCGAGCAGAGGTCAGAGGGCTTCCTCTCCCTCCCACGTTCCT
CCTGCGATGCATGCCTTTTCGATTTCTCGCCACAACGGTTGCTTAAGAGA
TACGGAGTTCCTAATTACAGCAATGTGGCGTATCCAAGTTGTAGGAAAGG
CTAGCTTCAGTGGCACTGTTGTTTTTGGCCTGCGGTCTTCGGAACGGAAA
TTCGTGTGAGGTTGACCAGGACGAGGCGGTACCGGCCGGACACAGAGGCC
AGAACGGTGTTTTTTCTTCAACACGACAGCAACAAGAATAACAACAAGAA
CAAAGAACAACAAAAGGCGAAAAACAGAGTTGTCGAAGGAGGCTAGTTGC
ACCATCACCCCGCGATCCTTCGAGGTATTGGAGCTGCGGAAAGAGGCAAA
CGCGGCAGGTTCCTTCAGTGCGGGTCGGTAGCGACGCCGACACGTGGGAG
CTGGACACCCCCCCCCCCCCCCTACACAATTCGGTTTATTCCGTCACCCC
CAAACCCTAGCAGCGCGGACGCAGCAGTCGCCCCAAGCGCGCCATCCTTC
TTCTCGCATCTTGTCTTCTCTCGTCGTTGTCACAGGTGGTATATTATATT
GTATTGTATGTTTTTCTACGAGGGGTCTACGGCAGCGTGGGAGGTGGACA
CCCACACGCTCGCCCTTGCCACCTACATACCCCCATCCAAAGAATAGACT
GTATTGTATTGTATTGTATTGTATTGTATGCCATCACCCCTAACCTAACC
CCGGTCACCCGAAACGCTATCCTTGTCATCACTTGTTTATGATCGCCGTA
GGTGGTGCAAGGCATCTACAGCGGTGTGGGATACACGTACTTGACACCCC
AAAATGGCGCTATTTTTCTTCCCATCTCTTATTTATGATCTTCGTATGTA
TCTCTTATTGATGATCGTCGTGGGCGGTGCAATGCATCTACTATACTACA
CTATACTATACTATACTACTATACTACACTAACTATACTATACAGCAGTG
GTGTCACCGTACCATCACACCTCAAAACCCATTTCGTCCGAAGCGCTACT
TGGCATTTCCTCTCATCTCTTGTTCACGATCGTCATCGCAGGTGGTGCAG
GGCATCTACAGCGGCGTGACGACGTGGGAGCTCGACACCCTCGCCGCCGA
GACGTGCGCCTACATGAACACGGAGCACCCGCACTACGCCCGGCTAGCGG
CGAGGATCTCCGTGTCCAACCTGCAGCGCGCGACCAGCCCGTCCTTCGCC
GAAACGGTGGAGGAGCTGCATGCCTACGTCGACCCGAAGACGGGTAGACA
GGCGGGGTACATCAGCGACGAGGTAGGGGGGTACGGGGGTTCCGTGGTTT
GCAATGTATCGTGTGATGCCCGGGGGTTCTGTCGTATAGATGCCAGTAGT
CGGCGTACATCATCAGCGACGAGGTGGTGTAAGGGGATGTACTCAAGTAA
ACGCATGCCGTGTTCGGTAGACCTCGCATCCCTAGTACACTGCCGGGACC
CGGATTTTCGCGGAACCAGGCTATGTTTCACAAGGATGAGCCACAGGGGT
AGAAGGGGGGGGGTGCGGTGGTCCCGTTGTTTGTAAGATCTCGGACGAGA
GGTCACCCGGTGCTGAAACTTTTTTTGTGCTCACCGCAGTGGATGGTTGT
GGTTTGGACTATTATGTAGGGGGTGTTTGTGGCTGAGGGATATCGAAGCC
GAAGTCAAACCATTACAACAAGAGATGCAAAGCCTTTGTTTGCTTACTCC
AAGGGTGATATGTAGCTGAACGGGGGGGGCGTTAAGTCCACGTAGGTTGT
GGTAAAGCCGTCCTTTGTTTGGCTGCTGCCCATGCGACCGTTGCCGCTGC
TGCTGGTGGTGGTGGTGGTTGCTGTTGCTCTCTGTTGATGGTGTTGCTGC
TGCTACTGGTGGCACACAGTAGAGTAACCCAGGGCAGTTTCCATCGTCTG
GGTGAGAGTTCTAACGATACATGAAAGGCGGACGACTAAATGTTTGTTTG
TTCGGTCGGGGTTTTGACCTTGCTTGATTTGGTGAAGGTGACACAAACCC
TGGACTTTCCGAGAAGCGGTGCACCAAAGCTGGTGTCGCTGCTTGCTTCT
AGTAGCGTTGGTGCTTCTCTCTCTCCCCCCTCCAATTGCAGTTTTTCTTC
GTTGTTCCCGGGATGTATTTCCCCCGGTTCAGTTCCCCATTTTAGACGAG
ACCTTGACCTCTCCCCCCCATCCCGACCCCCGTCTGCAAATGCAGGTACA
CGAGATCGTGATGAAGAATCGCGAGGTGATCGACGCAGAGGTGAAGCACG
AGAGAGACTTCTCGTTCGACTTCTTTGGCTTTAAGGTGAGCGAAGGAGTC
GGGATGGGGGGGGGAGGGGGTGGGAAAGAGTGACGGAACGGATGAAAGAG
TGACAGAGAGATTAGAGGAGAGAGGGAGGGAGAGAAAGTGAGAATGAGTG
GTAAGTGGTAAGAGAGATTGGTCGTGTGACCTGAGTTAATCACATAAGTG
TCCAACGTACAAGAGGAAATCTAACTACTTAGTGCTTGCGAGTTCTAGCA
AGTAATCGGTCGCGCCTCCTGCCTGCCCACGCCCACATAACCTCTTCCCG
TAGGCGCGAAAGAGGGTTACCCCCCCCCCCCCCCCTCCCGTTCTGAATGG
ATCGTGTTCACACGTGCCACATTTGTGTCATCGCTCTTACCCGATTCGTC
CAGACCCTGGAGCGAGCGTACTTGCTCAAGCTCGGGGACAAGGTGATGGA
GCGGCCGCAGTACATGTTCATGCGGATCGCCATCGGCATCCACGGGGAGG
ACCTCAAGGTACAGCAGTACCCCACCCACCTGCTTGACCCGCGACCTGCC
GAACTAGTAGGGTAGTAGGGTGATCCCGGGGGAAGGGAGGTGGATGCTCT
CATCTCTCATGTAAACGCGTATACCCGTACCTTGTAGTGGTTAGACCATT
GACATCGCATCCCTGCAATGCCGGGACGGTGCGATAGGCCTTCCGGGTTT
TCATTGGCCCAGGCTACGATTTACAAGGATTAAAATCCAAGACCTGGTCA
TCATCCTTGCGTTTTTTGGGAGCTTTTGTGTGAACTATTTGGGGCCGTCC
CAGGCGACACGTACCACCCTTGCGTCGGGTCTAACAGTTTATCGACTAAA
GCCACTTGTTCCCGTGAAAAGGGCCACGGCCCCCCCCCCCCCACCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGCCCGCCCACCCAC
CCATCCTTACCAGCTCTCTCTCGGTTTTATCTCTTTTTTTGTTGTTGTTT
TTTTTGTGTAAATTTCTTCATTTTGGTGTGAATGTCCTGCTTTATCCCAG
GCGGCGTTCGAGACGTACCACCTCATGTCGGAGAAGTGGTTCATCCACGC
GTCGCCCACCCTGTTCCACGCCGGCACGTGCCAGCCGCAGCTGTCGAGCT
GTTTCTTGCTCACCACGAAGGAAGACAGCATCTCCGGCATCTACGACACC
CTCAAGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11747:2..3959+

>mRNA_E-fasciculatus_F_contig11747.1380.1 ID=mRNA_E-fasciculatus_F_contig11747.1380.1|Name=mRNA_E-fasciculatus_F_contig11747.1380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11747:2..3959+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCGTGTTCACACGTGCCACATTTGTGTCATCGCTCTTACCCGATT
CGTCCAGACCCTGGAGCGAGCGTACTTGCTCAAGCTCGGGGACAAGGTGA
TGGAGCGGCCGCAGTACATGTTCATGCGGATCGCCATCGGCATCCACGGG
GAGGACCTCAAGATGGATCGTGTTCACACGTGCCACATTTGTGTCATCGC
TCTTACCCGATTCGTCCAGACCCTGGAGCGAGCGTACTTGCTCAAGCTCG
GGGACAAGGTGATGGAGCGGCCGCAGTACATGTTCATGCGGATCGCCATC
GGCATCCACGGGGAGGACCTCAAGCTGTTTCTTGCTCACCACGAAGGAAG
ACAGCATCTCCGGCATCTACGACACCCTCAAGCACTGTTTCTTGCTCACC
ACGAAGGAAGACAGCATCTCCGGCATCTACGACACCCTCAAGCA
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