prot_E-fasciculatus_F_contig11743.1379.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig11743.1379.1
Unique Nameprot_E-fasciculatus_F_contig11743.1379.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length306
Homology
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 429 bits (1103), Expect = 2.220e-142
Identity = 254/307 (82.74%), Postives = 268/307 (87.30%), Query Frame = 0
Query:    1 MLARGLSLTLPLLLVLSPLVLSRVGAQCFVPSASAWLSTTTATTRAMRLAPHTTSTSACQRLLLLLASQPRRRNLLPHIPSISTLRASLHGGTMASTCGATPPMAPAAAPLLPRISSNSGSGSSRRRLRHLAASPTGTSPTNSMARGPTGEPSPRPAVRRAVGSNMKTPPPPTGKEDGDLISTTPSLLPSPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMT-TAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            MLARG SL LPLLLVLSPLVLS VGA CF+P++SA LSTT ATTRAMRLAPHTTSTSACQRLLLLLAS P+RRNLLPHIPS STLRASLHGGT+ ST GATPPMAPAA+PLLPR           RRL+HLAASPTGTSPTN +ARGPTGEPSPRPA+RRAVGSNMKT P  T KEDGDLISTT S LPS SSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALT+   LSS T AEA+AGGDAG+  +AAPA VNGG AGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR +
Sbjct:    1 MLARGFSLALPLLLVLSPLVLSHVGAPCFIPASSAGLSTT-ATTRAMRLAPHTTSTSACQRLLLLLASHPKRRNLLPHIPSTSTLRASLHGGTITSTRGATPPMAPAASPLLPRXXXXXXXXXXXRRLQHLAASPTGTSPTNPIARGPTGEPSPRPALRRAVGSNMKTLPR-TNKEDGDLISTTRSPLPSASSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSF 305          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 8.870e-51
Identity = 113/143 (79.02%), Postives = 117/143 (81.82%), Query Frame = 0
Query:  166 MKTPPPPTGKEDGDLISTTPSLLPSPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGE--AGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            MKTPP  T KEDGDLI T  S LPSPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALT+ TTLSS T AEA+AG DAG+              AGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR +
Sbjct:    1 MKTPPR-TNKEDGDLIGTARSPLPSPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSF 142          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.470e-13
Identity = 50/109 (45.87%), Postives = 56/109 (51.38%), Query Frame = 0
Query:  198 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            DTIFAL++G AG AGVAV+R+SGP +   L  L                                  A  R    P ARRA VRRLYDP  GDLLDEALVLWMPGPR +
Sbjct:    4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLIT--------------------------------APGRHAKMPEARRAAVRRLYDPVKGDLLDEALVLWMPGPRSF 80          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05)

HSP 1 Score: 69.7 bits (169), Expect = 1.560e-11
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 0
Query:  196 SEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPR 304
            S DTI+A+++G AG AG+AVVR+SGP + + + ALT                                         PA+RRAVVR+L DPATGDLLD+A+VLW+PGP+
Sbjct:    3 SSDTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGS--------------------------------------LPASRRAVVRKLGDPATGDLLDQAVVLWLPGPQ 72          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A0G4EE61_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE61_VITBC)

HSP 1 Score: 68.9 bits (167), Expect = 2.480e-9
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 0
Query:  197 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            +DTI+AL++G+ G AGVAV+RISGPLS  +LQ LT   +                 T    ++ +       L P P  R+AV+RR+YDP  G+LLD+ LV+W P P  +
Sbjct:   77 DDTIYALSSGS-GKAGVAVIRISGPLSPLILQLLTTDPS-----------------TRPCSSSSSNAIPYHGLRPLPPPRQAVLRRIYDPLVGELLDQGLVMWFPSPHSF 168          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A258GN67_9PROT (tRNA modification GTPase MnmE n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258GN67_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 5.120e-9
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0
Query:  198 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPP---FPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            DTI ALA+G+ G AGVAV+R SGP SA V++ALT          A     GD+   T +  A++  +  R  P     P  R+A VR+L+D A G  LDEAL+LWMPGP  Y
Sbjct:    9 DTIIALASGS-GRAGVAVIRASGPGSAGVIRALTR---------ANQPYPGDSSGPTGSEGALDPADVSRETPQPQSLPQPRKAAVRKLFDEA-GGFLDEALILWMPGPLSY 109          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A6A4X5J5_AMPAM (tRNA modification GTPase GTPBP3, mitochondrial n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4X5J5_AMPAM)

HSP 1 Score: 67.4 bits (163), Expect = 7.030e-9
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 0
Query:  199 TIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            T+FAL++G+ G  GVAV+R++GP SA  L+ALT G +L                                    PAARRAVVRRL+ P  G LLD AL+LW+PGP  +
Sbjct:   25 TVFALSSGH-GRCGVAVIRVTGPASADALRALTGGRSL------------------------------------PAARRAVVRRLFSPCDGALLDRALLLWLPGPASF 95          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: UPI00056EA609 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00056EA609)

HSP 1 Score: 65.5 bits (158), Expect = 2.910e-8
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 0
Query:  198 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            DTIFAL+TG  G A +AV+RISGP +  VL++LT                                  GR LP    AR+AVVR + DP TG+++DEALVLW PGP  +
Sbjct:    8 DTIFALSTGQ-GAAAIAVIRISGPRAGDVLRSLT----------------------------------GRNLPE---ARKAVVRSIRDPETGEVVDEALVLWFPGPGSF 78          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: A0A7W6IDK9_9HYPH (tRNA modification GTPase MnmE n=1 Tax=Microvirga flocculans TaxID=217168 RepID=A0A7W6IDK9_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 3.690e-8
Identity = 49/111 (44.14%), Postives = 59/111 (53.15%), Query Frame = 0
Query:  196 SEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            S+DTIFA+A+G  G A V ++RISGP S  VL+ +                GGD                   LPP    RRAVVR L DPATG+ LD+ALVLWMPGPR +
Sbjct:    3 SDDTIFAMASGQ-GRAAVCLIRISGPGSRGVLERM----------------GGD-------------------LPP---PRRAVVRTLRDPATGEPLDQALVLWMPGPRSF 74          
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Match: UPI001378B2FE (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Microvirga arsenatis TaxID=2692265 RepID=UPI001378B2FE)

HSP 1 Score: 65.1 bits (157), Expect = 3.690e-8
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 0
Query:  196 SEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDAGMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRRY 306
            S+DTIFA+A+G+ G A V ++RISGP S  +L+ +  G                                       P  RRAVVR L DPATG+ LD+ALVLWMPGPR +
Sbjct:    3 SDDTIFAIASGH-GRAAVCLIRISGPGSGLILERMAGG--------------------------------------VPEPRRAVVRTLVDPATGEPLDQALVLWMPGPRSF 74          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11743.1379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG51_ECTSI2.220e-14282.74TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A6H5K111_9PHAE8.870e-5179.02TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
A0A836CK05_9STRA9.470e-1345.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00199C6C051.560e-1141.28tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A0G4EE61_VITBC2.480e-940.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A258GN67_9PROT5.120e-945.54tRNA modification GTPase MnmE n=2 Tax=Alphaproteob... [more]
A0A6A4X5J5_AMPAM7.030e-940.74tRNA modification GTPase GTPBP3, mitochondrial n=3... [more]
UPI00056EA6092.910e-841.28tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A7W6IDK9_9HYPH3.690e-844.14tRNA modification GTPase MnmE n=1 Tax=Microvirga f... [more]
UPI001378B2FE3.690e-839.64tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018948GTP-binding protein TrmE, N-terminalPFAMPF10396TrmE_Ncoord: 199..306
e-value: 5.8E-10
score: 39.5
IPR027266GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1GENE3D3.30.1360.120coord: 192..306
e-value: 3.9E-11
score: 44.8
NoneNo IPR availablePANTHERPTHR42714:SF2TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIALcoord: 194..304
NoneNo IPR availablePANTHERPTHR42714FAMILY NOT NAMEDcoord: 194..304
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..306
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.873
NoneNo IPR availableSUPERFAMILY103025Folate-binding domaincoord: 198..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11743contigE-fasciculatus_F_contig11743:3156..4073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11743.1379.1mRNA_E-fasciculatus_F_contig11743.1379.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig11743 3156..4073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig11743.1379.1 ID=prot_E-fasciculatus_F_contig11743.1379.1|Name=mRNA_E-fasciculatus_F_contig11743.1379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp
MLARGLSLTLPLLLVLSPLVLSRVGAQCFVPSASAWLSTTTATTRAMRLA
PHTTSTSACQRLLLLLASQPRRRNLLPHIPSISTLRASLHGGTMASTCGA
TPPMAPAAAPLLPRISSNSGSGSSRRRLRHLAASPTGTSPTNSMARGPTG
EPSPRPAVRRAVGSNMKTPPPPTGKEDGDLISTTPSLLPSPSSSSSEDTI
FALATGNAGPAGVAVVRISGPLSAQVLQALTAGTTLSSGTVAEAAAGGDA
GMTTAAPAAVNGGEAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWM
PGPRRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027266TrmE/GcvT_dom1
IPR018948GTP-bd_TrmE_N