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Homology
BLAST of mRNA_E-fasciculatus_F_contig11508.1217.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 9.100e-130 Identity = 281/344 (81.69%), Postives = 288/344 (83.72%), Query Frame = 1
Query: 1 ILTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVHRKVGLAFVRRGWVRTILRLGALEDGTSFLEPEVGYCLHVLASSGGVMEAVCRAQDDTLERLLEYAATLLRSSSESTQRNAMLFWEAAMRFPPALEAFDQYGGVSKLVYLLLPTVQSYPDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RSSLDGPNGGTGLGXXXXXXXXXXXXSAMPPHRRTQVTLGACGCVRQYLRCSLALAVLKQRGGSAGGAGGHVFRHNQRARRGSDSLSEGAAAA-------GATPPSPSLSRAPGRPAWQCKPLAVDDASHAANVAAVK 1005
ILTPLFSGDGLAVVD+LLANPQLEIRGHAVELLSTLLVH+KVGLAFVRRGWVRT+LRLGALEDGT+FLEPEVGYCLHVLASSGGVMEAVCRAQDDTLERLL YAATLLRS SESTQRNA+LFWEAAMRFPPALEAFDQYGGVSKLVYLLLPT QSYPDGAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSSLD NGGTGLGXXXXXXXX S+ PHRRTQVTLGACGCVRQYLRCSLALAVLKQRG SA AGGH G TPPSPSLSRAPGRPAWQCKPLAVDDASHAANVAAVK
Sbjct: 416 ILTPLFSGDGLAVVDVLLANPQLEIRGHAVELLSTLLVHKKVGLAFVRRGWVRTLLRLGALEDGTAFLEPEVGYCLHVLASSGGVMEAVCRAQDDTLERLLAYAATLLRSPSESTQRNALLFWEAAMRFPPALEAFDQYGGVSKLVYLLLPTGQSYPDGAASSGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRMRWWRSSLDALNGGTGLGXXXXXXXX----SSATPHRRTQVTLGACGCVRQYLRCSLALAVLKQRGVSA--AGGHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPPSPSLSRAPGRPAWQCKPLAVDDASHAANVAAVK 753
BLAST of mRNA_E-fasciculatus_F_contig11508.1217.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE) HSP 1 Score: 349 bits (895), Expect = 1.640e-105 Identity = 223/340 (65.59%), Postives = 230/340 (67.65%), Query Frame = 1
Query: 1 ILTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVHRKVGLAFVRRGWVRTILRLGALEDGTSFLEPEVGYCLHVLASSGGVMEAVCRAQDDTLERLLEYAATLLRSSSESTQRNAMLFWEAAMRFPPALEAFDQYGGVSKLVYLLLPTVQSYPDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSLDGPNGGTGLGXXXXXXXXXXXXSAMPPHRRTQVTLGACGCVRQYLRCSLALAVLKQRGGSAGGAGGHVFRHNQRARRGSDSLSEGAAAA-----GATPPSPSLSRAPGRPAWQCKPLAVDDASHAANVAAVK 1005
ILTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVH+KVGLAFVRRGWVRT+LRLGAL+DG +FLEPEVGYCLHVLASSGGVMEAVCRAQ FWE+AMRFPPALEAFDQYGGVSKLVYLLLPT QSYPDGAAA XXXXXXXXXXXXXXX RSSLD PNGG+GL S+ PHRRTQVTLGACGCVRQYLRCSLALAVLKQRGG G TPPSPSLSRAPGR AWQCKPLAVDDASHAANVAAVK
Sbjct: 496 ILTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVHKKVGLAFVRRGWVRTLLRLGALDDGNAFLEPEVGYCLHVLASSGGVMEAVCRAQ----------------------------FWESAMRFPPALEAFDQYGGVSKLVYLLLPTGQSYPDGAAASGTXXXXXXXXXXXXXXXESTGASARSNGESSSPPRQRIRWWRSSLDAPNGGSGLAGGQGQGGGS---SSATPHRRTQVTLGACGCVRQYLRCSLALAVLKQRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPPSPSLSRAPGRQAWQCKPLAVDDASHAANVAAVK 804
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 419.5 |
| Seed ortholog evalue | 1.5e-114 |
| Seed eggNOG ortholog | 2880.D7FHI0 |
| Preferred name | VPRBP |
| KEGG ko | ko:K10744,ko:K11789 |
| KEGG Pathway | ko03030,map03030 |
| GOs | GO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141 |
| EggNOG free text desc. | histone kinase activity (H2A-T120 specific) |
| EggNOG OGs | KOG1832@1,KOG1832@2759 |
| Ec32 ortholog description | Armadillo-type fold |
| Ec32 ortholog | Ec-25_002300.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03032,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1008 |
| Cds size | 1005 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11508.1217.1 >prot_E-fasciculatus_F_contig11508.1217.1 ID=prot_E-fasciculatus_F_contig11508.1217.1|Name=mRNA_E-fasciculatus_F_contig11508.1217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=335bp
ILTPLFSGDGLAVVDLLLANPQLEIRGHAVELLSTLLVHRKVGLAFVRRG WVRTILRLGALEDGTSFLEPEVGYCLHVLASSGGVMEAVCRAQDDTLERL LEYAATLLRSSSESTQRNAMLFWEAAMRFPPALEAFDQYGGVSKLVYLLL PTVQSYPDGAAASGTAAGGGGRNAAAAGTESTGESARNNNGESSSPPRQR MRWWRSSLDGPNGGTGLGGGQQGQGGSGSSSAMPPHRRTQVTLGACGCVR QYLRCSLALAVLKQRGGSAGGAGGHVFRHNQRARRGSDSLSEGAAAAGAT PPSPSLSRAPGRPAWQCKPLAVDDASHAANVAAVK back to topmRNA from alignment at E-fasciculatus_F_contig11508:435..3344+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11508.1217.1 ID=mRNA_E-fasciculatus_F_contig11508.1217.1|Name=mRNA_E-fasciculatus_F_contig11508.1217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2910bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11508:435..3344+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATATTGACCCCGTTGTTCAGCGGGGATGGGTTAGCCGTGGTGGACCTCCT
GCTGGCGAACCCGCAGCTGGAGATCAGAGGGCACGCCGTCGAGCTGCTGT
CTACGCTGCTCGTCCATAGGAAGGTGCCGAACGCTGCGTTAGATAGCGTA
ACACACGCAACGTTTTTTTGGGGGGTGTACTCATAGTCGTGCATGCTCTC
ACATCGCCAAGCGCGAAGCGCCGTGAGTTATTCGACGAGTCGTATGGACG
GGCTGGTTGTCTGTTCTTGACATATTTTCTCGGCAAGAGAAGTAGATGGA
GATCGGTAGAGAGAGAGGTAGAGAAGGACAAAGACAAGCAGAAAGAGAGA
GGCGGTTACGTGACGCCGACAACAACATCGTGAGCACGGCCCTCTCGCGC
TATGCGCTGTTGTCGCGCGGGTGTTTCAGGTGGGACTGGCGTTTGTTCGA
CGGGGGTGGGTCCGGACTATCCTTCGACTGGGGGCTCTCGAAGACGGGAC
TTCTTTCCTGGAGCCCGAGGTGGGCTACTGCCTCCACGTGCTGGCCTCCA
GCGGCGGGGTGATGGAGGCCGTGTGCAGGGCGCAGGTAAGCCGGTGTATC
TCTTCGGCGCCATTACGTCCAGGGGGGGGAGGGGGTTGCATGCCTTGGCG
GTTAGACCGCTGACGACGCGTCCTCGAGAGGACGGAGCACTGTTCCCACG
GGAGGACCGATCACTGGTGGCCAATCTTTCCACACTACTTTCCCTAGGGC
ACTCTCCCGCCAACCTCCCATGAACCGCAATGTTTTACAACAACACTCCT
CTAGACCCGCCCCCCCGCGATTTTGACGGGGGCCGGGAGATGGTGCGTGT
CCGCGATGATGGGGACAGTAATCCTGCGTGCTGCGGAGCCCCCCCCCAGG
ATGTGAACGTATACCCTTGCATTGCCCTACAGTCCGTCGTCGCTCTGCAC
ACCGTGTTTTTGTTCCCTGTGCTCTACACGTAAGAATGTTATTTTGAAAT
CTATGTCGCTGTCGCGCTTCCGCTTTCTCTGATGTCAATTTGTGTTTTTT
GTCCTCGTTCCTTCAACATGTTTCAAATCCCTCGTAATCCTTCACATCTC
ATTGTCCAATCCCATGTGTTCAGGATGATACCCTGGAGCGCTTGCTTGAG
TACGCGGCAACGCTGCTGCGTTCGTCAAGCGAGTCCACTCAGAGAAACGC
CATGTTGGTGAGAGAGGGAGGGGGGGGGAGGGAGGCAGAAGAAGCGAGTG
AGAGGTGTTCAATCGCTTCATCCATTCTTATTCTTCTCCATGCTTGGAGA
AGCACCTAACCGCACGGAAGCCTGTTACGCAGTCCTCATCCACCCACTCG
AACCAAGCGAATTAATTTCGCCCACCGCACTGAATGTACCTAGTTCGTTT
TCATTGCTCACCGTACTGAATGTACCTAGTTCGTTTTCATTGCTCACCGC
ACTGAACGTATCTACTTCGTTTTCATTGCTCACCGCACGGAATGTACTTC
GTTTTCATTGCTCACCGTACTGAACGTATCTACTTCGTTTTCATTGCTCA
CCGCACTGAATGTACCTACTTCGTTTTCATTGCTCACCTCAACGACGAAC
CCGGCTCTCAAGCGCAGGAGAGGCGGGGCGGGGAGGGGGGTACTAATAGC
TGTGCATGCCGTAAACGTTAGACCATTGACATTGCATCCCTTACAAAGGC
GGGACGAAGTACGCGGGGCACGATGAGGGCCACACTCTATCCTCGGAGCA
AGGGGAGGAAAGGTCACATCGGGAGAGCTTTTATAGCAGTAAACCGCCGC
CGCCACCCTGAACCAACCTTTTTTGCCGATGTTTTTCGTGTTTACGTGCT
GCTTGTTCGGCCCGCCGTGTCGGAGGCGCAGTTCTGGGAGGCGGCGATGC
GTTTCCCGCCGGCTCTCGAGGCGTTCGACCAGTACGGAGGCGTGTCCAAG
CTCGTCTATCTCCTGCTCCCAACCGTGCAGGTGAAGAAGATGAAAAAACT
CGGACCCTAAGTAGTAGTCGGCTCCGCCTGTTTTTGTTCAGAGGAGGGAA
CCTCGACCAGAACGGACCTAGTGTTGACGTGAGGACTGCCGAAGTGTAGG
ATACAACTGTGCAGAGCAGAAGAAGATTTATCTGCGGCAAGAGGTGCTTC
GCGCGGAATCTAGCCATGTACAAGCGTAAGGTACATAGTATATTTTTCTC
GTTCGCGTTCGGCTTGTTTGCATTTTCGCGACTTTATTTTTTCTTTCAAG
GGTGGGTCCCTGTTCCCTGAACGACTTTCCTCCACGTGCTACTTGCCGTA
GCGACCCACACAGCCGCACCCTCCTGTTCCTCAACCTTCGCCTACACGTC
TCCATTCGCGTTGCAGAGCTACCCGGACGGGGCTGCGGCTTCTGGGACGG
CCGCGGGCGGCGGCGGTCGTAACGCCGCCGCCGCCGGTACAGAATCCACC
GGCGAGAGCGCACGCAACAACAACGGAGAATCTTCGTCACCCCCCAGGCA
GCGGATGCGGTGGTGGCGCAGTTCGCTCGATGGGCCCAACGGTGGCACCG
GTCTCGGCGGGGGGCAGCAGGGGCAAGGTGGCAGCGGCTCCTCCTCGGCG
ATGCCCCCCCATCGCCGTACGCAGGTGACGCTGGGCGCTTGCGGCTGCGT
CCGGCAGTACCTCCGGTGCAGCCTCGCGCTTGCCGTGCTCAAGCAGCGGG
GGGGCTCCGCGGGCGGTGCGGGCGGACACGTCTTCAGGCACAACCAACGC
GCGCGGCGAGGGAGCGACTCGTTGTCGGAGGGAGCGGCGGCGGCAGGAGC
AACGCCTCCGTCGCCGTCGTTGTCGCGGGCGCCCGGCCGACCGGCCTGGC
AGTGCAAGCCTCTGGCGGTAGATGACGCCAGCCACGCGGCGAATGTCGCG
GCGGTGAAAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11508:435..3344+ >mRNA_E-fasciculatus_F_contig11508.1217.1 ID=mRNA_E-fasciculatus_F_contig11508.1217.1|Name=mRNA_E-fasciculatus_F_contig11508.1217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2010bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11508:435..3344+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATATTGACCCCGTTGTTCAGCGGGGATGGGTTAGCCGTGGTGGACCTCCT GCTGGCGAACCCGCAGCTGGAGATCAGAGGGCACGCCGTCGAGCTGCTGT CTACGCTGCTCGTCCATAGGAAGATATTGACCCCGTTGTTCAGCGGGGAT GGGTTAGCCGTGGTGGACCTCCTGCTGGCGAACCCGCAGCTGGAGATCAG AGGGCACGCCGTCGAGCTGCTGTCTACGCTGCTCGTCCATAGGAAGGTGG GACTGGCGTTTGTTCGACGGGGGTGGGTCCGGACTATCCTTCGACTGGGG GCTCTCGAAGACGGGACTTCTTTCCTGGAGCCCGAGGTGGGCTACTGCCT CCACGTGCTGGCCTCCAGCGGCGGGGTGATGGAGGCCGTGTGCAGGGCGC AGGTGGGACTGGCGTTTGTTCGACGGGGGTGGGTCCGGACTATCCTTCGA CTGGGGGCTCTCGAAGACGGGACTTCTTTCCTGGAGCCCGAGGTGGGCTA CTGCCTCCACGTGCTGGCCTCCAGCGGCGGGGTGATGGAGGCCGTGTGCA GGGCGCAGGATGATACCCTGGAGCGCTTGCTTGAGTACGCGGCAACGCTG CTGCGTTCGTCAAGCGAGTCCACTCAGAGAAACGCCATGTTGGATGATAC CCTGGAGCGCTTGCTTGAGTACGCGGCAACGCTGCTGCGTTCGTCAAGCG AGTCCACTCAGAGAAACGCCATGTTGTTCTGGGAGGCGGCGATGCGTTTC CCGCCGGCTCTCGAGGCGTTCGACCAGTACGGAGGCGTGTCCAAGCTCGT CTATCTCCTGCTCCCAACCGTGCAGTTCTGGGAGGCGGCGATGCGTTTCC CGCCGGCTCTCGAGGCGTTCGACCAGTACGGAGGCGTGTCCAAGCTCGTC TATCTCCTGCTCCCAACCGTGCAGAGCTACCCGGACGGGGCTGCGGCTTC TGGGACGGCCGCGGGCGGCGGCGGTCGTAACGCCGCCGCCGCCGGTACAG AATCCACCGGCGAGAGCGCACGCAACAACAACGGAGAATCTTCGTCACCC CCCAGGCAGCGGATGCGGTGGTGGCGCAGTTCGCTCGATGGGCCCAACGG TGGCACCGGTCTCGGCGGGGGGCAGCAGGGGCAAGGTGGCAGCGGCTCCT CCTCGGCGATGCCCCCCCATCGCCGTACGCAGGTGACGCTGGGCGCTTGC GGCTGCGTCCGGCAGTACCTCCGGTGCAGCCTCGCGCTTGCCGTGCTCAA GCAGCGGGGGGGCTCCGCGGGCGGTGCGGGCGGACACGTCTTCAGGCACA ACCAACGCGCGCGGCGAGGGAGCGACTCGTTGTCGGAGGGAGCGGCGGCG GCAGGAGCAACGCCTCCGTCGCCGTCGTTGTCGCGGGCGCCCGGCCGACC GGCCTGGCAGTGCAAGCCTCTGGCGGTAGATGACGCCAGCCACGCGGCGA ATGTCGCGGCGGTGAAAAGCTACCCGGACGGGGCTGCGGCTTCTGGGACG GCCGCGGGCGGCGGCGGTCGTAACGCCGCCGCCGCCGGTACAGAATCCAC CGGCGAGAGCGCACGCAACAACAACGGAGAATCTTCGTCACCCCCCAGGC AGCGGATGCGGTGGTGGCGCAGTTCGCTCGATGGGCCCAACGGTGGCACC GGTCTCGGCGGGGGGCAGCAGGGGCAAGGTGGCAGCGGCTCCTCCTCGGC GATGCCCCCCCATCGCCGTACGCAGGTGACGCTGGGCGCTTGCGGCTGCG TCCGGCAGTACCTCCGGTGCAGCCTCGCGCTTGCCGTGCTCAAGCAGCGG GGGGGCTCCGCGGGCGGTGCGGGCGGACACGTCTTCAGGCACAACCAACG CGCGCGGCGAGGGAGCGACTCGTTGTCGGAGGGAGCGGCGGCGGCAGGAG CAACGCCTCCGTCGCCGTCGTTGTCGCGGGCGCCCGGCCGACCGGCCTGG CAGTGCAAGCCTCTGGCGGTAGATGACGCCAGCCACGCGGCGAATGTCGC GGCGGTGAAA back to top
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