mRNA_E-fasciculatus_F_contig11445.1166.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11445.1166.1
Unique NamemRNA_E-fasciculatus_F_contig11445.1166.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11445.1166.1 vs. uniprot
Match: D8LBS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS6_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.520e-50
Identity = 85/109 (77.98%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 MRSDPRLVKMW*GGGLVMVSAIVEDAAGGTVLPGVTFTHSSWKLTTEALGTKIDITASADAKNKDGFVAGCGGKVGVNPVKRLRQHLQRLRDHFDENARGGYESLRRVD 327
            MRS+PRL  MW  GGLVMVSAIVEDAAG T LPGVTFTHS WKLT EAL TKIDITA ADAKN+ GFVAGCGG VGVN +KRL  HLQRL DH D NARG Y+SLR VD
Sbjct:    1 MRSNPRLANMWWDGGLVMVSAIVEDAAGVTGLPGVTFTHSRWKLTIEALETKIDITAPADAKNQAGFVAGCGGDVGVNRIKRLGHHLQRLNDHIDPNARGSYDSLRWVD 109
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BLAST of mRNA_E-fasciculatus_F_contig11445.1166.1 vs. uniprot
Match: A0A6H5JFX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.280e-18
Identity = 52/102 (50.98%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    1 MRSDPRLVKMW*GGGLVMVSAIVEDAAGGTVLPGVTFTHSSWKLTTEALGTKIDITASADAKNKDGFVAGCGGKV-GVNPVKRLRQHLQRLRDHFDENARGG 303
            MRSDPRLVKMW  G LVMV+AIVEDAAG T LPGVTFTH  WKLT EAL T++        + K       GG +  +  V  L Q    LR   D+   GG
Sbjct:   12 MRSDPRLVKMWWDGDLVMVTAIVEDAAGVTGLPGVTFTHGPWKLTIEALKTRLTSQLQRMRRTKMDLSLVAGGMLDSLRWVDNLEQKRDVLRQ-MDDILEGG 112
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11445.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS6_ECTSI3.520e-5077.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFX2_9PHAE3.280e-1850.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11445contigE-fasciculatus_F_contig11445:4116..4442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.53596-UTR-E-fasciculatus_F_contig11445:4115..41661622927657.53596-UTR-E-fasciculatus_F_contig11445:4115..4166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11445 4116..4166 +
1695995637.4647622-UTR-E-fasciculatus_F_contig11445:4115..41661695995637.4647622-UTR-E-fasciculatus_F_contig11445:4115..4166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11445 4116..4166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.5502262-CDS-E-fasciculatus_F_contig11445:4166..44421622927657.5502262-CDS-E-fasciculatus_F_contig11445:4166..4442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11445 4167..4442 +
1695995637.4784803-CDS-E-fasciculatus_F_contig11445:4166..44421695995637.4784803-CDS-E-fasciculatus_F_contig11445:4166..4442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11445 4167..4442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11445.1166.1prot_E-fasciculatus_F_contig11445.1166.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11445 4167..4442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11445.1166.1

>prot_E-fasciculatus_F_contig11445.1166.1 ID=prot_E-fasciculatus_F_contig11445.1166.1|Name=mRNA_E-fasciculatus_F_contig11445.1166.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
MVSAIVEDAAGGTVLPGVTFTHSSWKLTTEALGTKIDITASADAKNKDGF
VAGCGGKVGVNPVKRLRQHLQRLRDHFDENARGGYESLRRVD
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mRNA from alignment at E-fasciculatus_F_contig11445:4116..4442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11445.1166.1 ID=mRNA_E-fasciculatus_F_contig11445.1166.1|Name=mRNA_E-fasciculatus_F_contig11445.1166.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=327bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11445:4116..4442+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTAGCGACCCACGCCTGGTCAAGATGTGGTAGGGTGGTGGCCTCGT
GATGGTATCAGCTATCGTCGAGGATGCGGCGGGGGGCACAGTGCTGCCGG
GGGTCACCTTCACCCATAGCTCCTGGAAGCTCACCACCGAGGCGTTGGGG
ACTAAGATTGACATCACAGCTTCAGCGGATGCGAAGAACAAAGATGGATT
CGTCGCTGGTTGCGGGGGAAAAGTTGGGGTCAACCCCGTGAAGAGGCTAA
GACAACACCTGCAGAGACTGCGCGACCATTTCGATGAGAATGCTAGGGGT
GGCTATGAGAGCCTTCGGAGGGTCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11445:4116..4442+

>mRNA_E-fasciculatus_F_contig11445.1166.1 ID=mRNA_E-fasciculatus_F_contig11445.1166.1|Name=mRNA_E-fasciculatus_F_contig11445.1166.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11445:4116..4442+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTATCAGCTATCGTCGAGGATGCGGCGGGGGGCACAGTGCTGCCGGG
GGTCACCTTCACCCATAGCTCCTGGAAGCTCACCACCGAGGCGTTGGGGA
CTAAGATTGACATCACAGCTTCAGCGGATGCGAAGAACAAAGATGGATTC
GTCGCTGGTTGCGGGGGAAAAGTTGGGGTCAACCCCGTGAAGAGGCTAAG
ACAACACCTGCAGAGACTGCGCGACCATTTCGATGAGAATGCTAGGGGTG
GCTATGAGAGCCTTCGGAGGGTCGACATGGTATCAGCTATCGTCGAGGAT
GCGGCGGGGGGCACAGTGCTGCCGGGGGTCACCTTCACCCATAGCTCCTG
GAAGCTCACCACCGAGGCGTTGGGGACTAAGATTGACATCACAGCTTCAG
CGGATGCGAAGAACAAAGATGGATTCGTCGCTGGTTGCGGGGGAAAAGTT
GGGGTCAACCCCGTGAAGAGGCTAAGACAACACCTGCAGAGACTGCGCGA
CCATTTCGATGAGAATGCTAGGGGTGGCTATGAGAGCCTTCGGAGGGTCG
AC
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