mRNA_E-fasciculatus_F_contig11375.1102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11375.1102.1
Unique NamemRNA_E-fasciculatus_F_contig11375.1102.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11375.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11375contigE-fasciculatus_F_contig11375:1705..2462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size758
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.1123514-CDS-E-fasciculatus_F_contig11375:1704..21541622927647.1123514-CDS-E-fasciculatus_F_contig11375:1704..2154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11375 1705..2154 +
1695995633.6561174-CDS-E-fasciculatus_F_contig11375:1704..21541695995633.6561174-CDS-E-fasciculatus_F_contig11375:1704..2154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11375 1705..2154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.1223779-UTR-E-fasciculatus_F_contig11375:2154..24621622927647.1223779-UTR-E-fasciculatus_F_contig11375:2154..2462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11375 2155..2462 +
1695995633.6672113-UTR-E-fasciculatus_F_contig11375:2154..24621695995633.6672113-UTR-E-fasciculatus_F_contig11375:2154..2462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11375 2155..2462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11375.1102.1prot_E-fasciculatus_F_contig11375.1102.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11375 1705..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11375.1102.1

>prot_E-fasciculatus_F_contig11375.1102.1 ID=prot_E-fasciculatus_F_contig11375.1102.1|Name=mRNA_E-fasciculatus_F_contig11375.1102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
EVLVGVSCVICAVEVARGSQAEENLTGLAGCECCSPIYCCCRICVSVPRA
PSARNEHVVGEWWFVVVVVVFVPGSWSNETGAVCAVSFFLVSGLICPSPE
KGSWWEAPCSCNDWLACGLFLLGASGTNTCPLTDRVCESCLRAYVPGVH*
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mRNA from alignment at E-fasciculatus_F_contig11375:1705..2462+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11375.1102.1 ID=mRNA_E-fasciculatus_F_contig11375.1102.1|Name=mRNA_E-fasciculatus_F_contig11375.1102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11375:1705..2462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGTTCTTGTCGGTGTTTCTTGCGTTATTTGTGCTGTCGAAGTGGCGCG
TGGCAGTCAGGCCGAGGAAAATTTGACGGGGTTAGCCGGATGTGAATGCT
GCAGTCCTATCTACTGCTGCTGTAGAATTTGTGTTTCTGTTCCGCGCGCA
CCCTCCGCTCGGAACGAACACGTTGTGGGTGAGTGGTGGTTCGTGGTGGT
GGTGGTAGTTTTTGTGCCTGGCAGCTGGTCTAACGAAACAGGCGCCGTGT
GCGCGGTCAGCTTCTTCTTGGTGTCTGGATTGATTTGTCCATCCCCGGAG
AAAGGGTCGTGGTGGGAGGCGCCCTGTTCGTGCAATGATTGGCTTGCGTG
CGGGCTGTTTTTGCTTGGTGCTTCAGGGACCAATACATGTCCACTGACCG
ACCGTGTTTGTGAATCGTGTTTGCGTGCATATGTGCCTGGGGTTCATTGA
GTATTTTGTCGAAAGGAAACACAACATGAGTCGCTCTCGCCGTCTTTCTC
GCAGGACGAAAAGGTGGCAGAAAGAGACTGGTAGGTGGTTCGAGAGCGCC
ATAAACCCCCCGGCAGTATGCCCTTGCGAAGGGTGTGTGTGCAGCACAGC
GGTATGAGAGCGGAGTGGTGGGTGCATTGGGTGATGTTTGTGAAAGGTTT
TGCCAAGTTTGCGAAGTTGGAATGACGCGTTTCTTTTTTTATATCGAGTT
TTCCGTGGGATGTTTTGCGGACTTGAGTTTGCTTGTAGGCAAAGGCGCCA
TCAGAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11375:1705..2462+

>mRNA_E-fasciculatus_F_contig11375.1102.1 ID=mRNA_E-fasciculatus_F_contig11375.1102.1|Name=mRNA_E-fasciculatus_F_contig11375.1102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11375:1705..2462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGTTCTTGTCGGTGTTTCTTGCGTTATTTGTGCTGTCGAAGTGGCGCG
TGGCAGTCAGGCCGAGGAAAATTTGACGGGGTTAGCCGGATGTGAATGCT
GCAGTCCTATCTACTGCTGCTGTAGAATTTGTGTTTCTGTTCCGCGCGCA
CCCTCCGCTCGGAACGAACACGTTGTGGGTGAGTGGTGGTTCGTGGTGGT
GGTGGTAGTTTTTGTGCCTGGCAGCTGGTCTAACGAAACAGGCGCCGTGT
GCGCGGTCAGCTTCTTCTTGGTGTCTGGATTGATTTGTCCATCCCCGGAG
AAAGGGTCGTGGTGGGAGGCGCCCTGTTCGTGCAATGATTGGCTTGCGTG
CGGGCTGTTTTTGCTTGGTGCTTCAGGGACCAATACATGTCCACTGACCG
ACCGTGTTTGTGAATCGTGTTTGCGTGCATATGTGCCTGGGGTTCATTGA
GAAGTTCTTGTCGGTGTTTCTTGCGTTATTTGTGCTGTCGAAGTGGCGCG
TGGCAGTCAGGCCGAGGAAAATTTGACGGGGTTAGCCGGATGTGAATGCT
GCAGTCCTATCTACTGCTGCTGTAGAATTTGTGTTTCTGTTCCGCGCGCA
CCCTCCGCTCGGAACGAACACGTTGTGGGTGAGTGGTGGTTCGTGGTGGT
GGTGGTAGTTTTTGTGCCTGGCAGCTGGTCTAACGAAACAGGCGCCGTGT
GCGCGGTCAGCTTCTTCTTGGTGTCTGGATTGATTTGTCCATCCCCGGAG
AAAGGGTCGTGGTGGGAGGCGCCCTGTTCGTGCAATGATTGGCTTGCGTG
CGGGCTGTTTTTGCTTGGTGCTTCAGGGACCAATACATGTCCACTGACCG
ACCGTGTTTGTGAATCGTGTTTGCGTGCATATGTGCCTGGGGTTCATTGA
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