mRNA_E-fasciculatus_F_contig11371.1101.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11371.1101.1
Unique NamemRNA_E-fasciculatus_F_contig11371.1101.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11371.1101.1 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.130e-28
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  147 MATPQESQYSVYPMGAAKAAVPNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAAQFAAVEHEK 344
            MAT QESQYSVYPMGAAKAA PNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAAQ AAVEH K
Sbjct:    1 MATLQESQYSVYPMGAAKAAAPNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAAQVAAVEHAK 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11371.1101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLI9_ECTSI2.130e-2893.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11371contigE-fasciculatus_F_contig11371:1466..1809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9771006-UTR-E-fasciculatus_F_contig11371:1465..16111622927646.9771006-UTR-E-fasciculatus_F_contig11371:1465..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11371 1466..1611 +
1695995633.6355808-UTR-E-fasciculatus_F_contig11371:1465..16111695995633.6355808-UTR-E-fasciculatus_F_contig11371:1465..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11371 1466..1611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9900985-CDS-E-fasciculatus_F_contig11371:1611..18091622927646.9900985-CDS-E-fasciculatus_F_contig11371:1611..1809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11371 1612..1809 +
1695995633.6446-CDS-E-fasciculatus_F_contig11371:1611..18091695995633.6446-CDS-E-fasciculatus_F_contig11371:1611..1809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11371 1612..1809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11371.1101.1prot_E-fasciculatus_F_contig11371.1101.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11371 1612..1809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11371.1101.1

>prot_E-fasciculatus_F_contig11371.1101.1 ID=prot_E-fasciculatus_F_contig11371.1101.1|Name=mRNA_E-fasciculatus_F_contig11371.1101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MATPQESQYSVYPMGAAKAAVPNFSDLGKPTVTVDVTRLQAELRALHQRL
EFLEVAAQFAAVEHEK
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mRNA from alignment at E-fasciculatus_F_contig11371:1466..1809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11371.1101.1 ID=mRNA_E-fasciculatus_F_contig11371.1101.1|Name=mRNA_E-fasciculatus_F_contig11371.1101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11371:1466..1809+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACACAATTCAAATTTAAAACCAGAACGAAGTCGTCTGTTGAAGTATTG
ACCATTCTTACGTGAACCATTTTTTCATGTCATCCCACTCGCTGAGTTAG
TCGGGAGTTCTTCTGTGGTTCGCCGGTCTTCGGCGCACACCGAGCAATGG
CAACACCACAGGAATCCCAGTACTCTGTGTACCCCATGGGGGCAGCTAAA
GCTGCAGTACCTAACTTTAGTGATCTCGGCAAGCCGACGGTCACTGTCGA
CGTCACGCGCCTGCAAGCTGAGCTAAGAGCATTGCACCAACGCCTGGAGT
TTCTGGAGGTTGCCGCCCAGTTTGCTGCGGTAGAGCACGAGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11371:1466..1809+

>mRNA_E-fasciculatus_F_contig11371.1101.1 ID=mRNA_E-fasciculatus_F_contig11371.1101.1|Name=mRNA_E-fasciculatus_F_contig11371.1101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11371:1466..1809+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAACACCACAGGAATCCCAGTACTCTGTGTACCCCATGGGGGCAGC
TAAAGCTGCAGTACCTAACTTTAGTGATCTCGGCAAGCCGACGGTCACTG
TCGACGTCACGCGCCTGCAAGCTGAGCTAAGAGCATTGCACCAACGCCTG
GAGTTTCTGGAGGTTGCCGCCCAGTTTGCTGCGGTAGAGCACGAGAAGAT
GGCAACACCACAGGAATCCCAGTACTCTGTGTACCCCATGGGGGCAGCTA
AAGCTGCAGTACCTAACTTTAGTGATCTCGGCAAGCCGACGGTCACTGTC
GACGTCACGCGCCTGCAAGCTGAGCTAAGAGCATTGCACCAACGCCTGGA
GTTTCTGGAGGTTGCCGCCCAGTTTGCTGCGGTAGAGCACGAGAAG
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