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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9993.17974.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW6_ECTSI) HSP 1 Score: 379 bits (974), Expect = 1.160e-117 Identity = 237/385 (61.56%), Postives = 255/385 (66.23%), Query Frame = 1
Query: 22 QVTKSASDGLDGREDLKPLVKRLEELERLRERKTSTDLTPAAVAASSSAAAEKVESIAKTVQEMALGVEVASRQQANFENSLEEVSETLNGHALKLRCLEGLWRQTGTTDIEKNVTGGAGAGSSGSSTPDCSRQHRNLEXXXXXXXXXXXXXXXXXXXXXLHAAAMPTEEHVVAAQAAPAFRTGLSGLLKRLGSSSLSSGQKEAGTNVADKDNEVGLGTPRPPVGRVTESEK-TVPQPETVELRKELGVGSGGNEKLPLGSGGAVQDDMDQREGLRGQKDGGDSSSKAGSSAYGSSIYDIVSSGEPRESSSGESRQPATLAESEEQHGRGGKDIPLSPSGNGTTLLSRDVETPAGVEGVGTAEDTPGKASARPRQQQKLEKTGGE 1173
QVT+S SDGLDGR+DLKPL KRL+ELERL ERKT TDLTPA V A SSAA EKVE IAKTVQEMALG E ASRQ+A FENS R+H+NLE LHA AMP E H VAAQ APAFRTGLSGLLKRLGS+SLSSGQKE GTN ADKDNEVGLGT RP +G T+SEK VPQ + +LR EL G GGNE LPL SG A QDD+DQREG RG+KD S AGSSAYGSS YDIV S EPRESSSGE ++PATL E EEQHGR G PLSP GNGTT+LSRDVE PAG EGVGTA+DTPGKASA+PRQQQ LEKT GE
Sbjct: 281 QVTQSVSDGLDGRQDLKPLAKRLDELERLWERKTPTDLTPATVTAPSSAAVEKVEGIAKTVQEMALGAEAASRQRAIFENS--------------------------------------------------GRKHQNLEQQQQKQQH-------------LHAGAMPVEGHAVAAQTAPAFRTGLSGLLKRLGSNSLSSGQKEVGTNAADKDNEVGLGTQRPSLGETTDSEKKAVPQSDAADLRTELAAGGGGNENLPLRSGSAAQDDVDQREGSRGRKDSSGSCGTAGSSAYGSSTYDIVFSAEPRESSSGEPQEPATLDEGEEQHGREGNGTPLSPRGNGTTILSRDVEIPAGAEGVGTAKDTPGKASAQPRQQQNLEKTEGE 602
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2574 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-12_006160.1 |
| Cds size | 2574 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842639.731792-CDS-E_fasciculatus_S2_contig9993:629..1535 | 1696842639.731792-CDS-E_fasciculatus_S2_contig9993:629..1535 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 630..1535 - |
| 1696842639.7466037-CDS-E_fasciculatus_S2_contig9993:1982..3020 | 1696842639.7466037-CDS-E_fasciculatus_S2_contig9993:1982..3020 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 1983..3020 - |
| 1696842639.770876-CDS-E_fasciculatus_S2_contig9993:3498..3715 | 1696842639.770876-CDS-E_fasciculatus_S2_contig9993:3498..3715 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 3499..3715 - |
| 1696842639.7859125-CDS-E_fasciculatus_S2_contig9993:4016..4166 | 1696842639.7859125-CDS-E_fasciculatus_S2_contig9993:4016..4166 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 4017..4166 - |
| 1696842639.7973585-CDS-E_fasciculatus_S2_contig9993:4475..4651 | 1696842639.7973585-CDS-E_fasciculatus_S2_contig9993:4475..4651 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 4476..4651 - |
| 1696842639.8088214-CDS-E_fasciculatus_S2_contig9993:5065..5152 | 1696842639.8088214-CDS-E_fasciculatus_S2_contig9993:5065..5152 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9993 5066..5152 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9993.17974.1 >prot_E_fasciculatus_S2_contig9993.17974.1 ID=prot_E_fasciculatus_S2_contig9993.17974.1|Name=mRNA_E_fasciculatus_S2_contig9993.17974.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=858bp
MVTSRKSQVTKSASDGLDGREDLKPLVKRLEELERLRERKTSTDLTPAAV AASSSAAAEKVESIAKTVQEMALGVEVASRQQANFENSLEEVSETLNGHA LKLRCLEGLWRQTGTTDIEKNVTGGAGAGSSGSSTPDCSRQHRNLEQQQQ QQQQQQQQQQQQQKQQHLHAAAMPTEEHVVAAQAAPAFRTGLSGLLKRLG SSSLSSGQKEAGTNVADKDNEVGLGTPRPPVGRVTESEKTVPQPETVELR KELGVGSGGNEKLPLGSGGAVQDDMDQREGLRGQKDGGDSSSKAGSSAYG SSIYDIVSSGEPRESSSGESRQPATLAESEEQHGRGGKDIPLSPSGNGTT LLSRDVETPAGVEGVGTAEDTPGKASARPRQQQKLEKTGGEGDCERDDAH LVLPPKAGSTESSAGVPCATPIATTTAAPTPKSTTTVPGNHTAERLHSRS GSAVAEATAPGDQRAARELDESGGSLEGDSAHSRWSLPESRGIGGIGAAG GLHEQRAIWAGGQEDDSEGFIEQAPSSVESESGGPGEDGKPLSRSRVESY DLQQETGEDYMDPFSPDRPSAASDVAASPDEKRPSGGSGVTSMTPPETEP PPEAVVGDVGQSSAADTPTPPASTTGSAATHGGGGGSRSGSLLAEWATIN EFIFSDDDEDEAGKTGGAGRGTTTPERSSQQHATSVDDPKGINNEPGVGE GESTCAKGASGDERASGGRKDGRDPVGHQGERPRDKGGITKEAFDDWSSS SSDDGNDSPRRKEPGNEGTRHRDRHEALLNPRGLAQGEQPGGSGGDGSDD EARSPPNPGGRRGVVDSACATPAPGAWSAPDFGFSSDDDLDIEFSASERS LERPAGR* back to topmRNA from alignment at E_fasciculatus_S2_contig9993:630..5152- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9993.17974.1 ID=mRNA_E_fasciculatus_S2_contig9993.17974.1|Name=mRNA_E_fasciculatus_S2_contig9993.17974.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4523bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9993:630..5152- (Ectocarpus fasciculatus EfasUO2) ATGGTGACGTCGCGAAAATCTCAGGTCACCAAATCTGCGTCGGACGGACT
TGATGGGAGGGAGGATTTGAAACCTCTCGTCAAGAGGGTGAGCACGGTAT
TGGCTATTACATCGAGAGGTTACCTAGACAAGCGCGGTGTGTACCAGCCC
GGATGGATAGTTTCCAAATCGTATCGTTTTGCGCCTTGCCTGTGAACGCC
ACGTACGGACACAAGATTTGTTGACACTATGTTTGGATAGCTGTACTCGA
AAGAGTGCCAACAACCCGCCGCCTTGTAGATAGCAAACGCAAGATCCTGG
GTTCTCGGCCAGCCGTCCAAACCAATGTGCGTTGTGATTAATTTCATTTT
TTATCCACTACCAACTCTACATTTCTCTGCTAACTTGCATTTCTGTGTCC
GTCGGTTGCCCGTCTGTCTATCTATCTGCGTCTCCCCCCCCTTCTTCGCG
TTTCCGGATGCCCGCTTTCAATTGCTTTCTTTGGTTTGGTTAAACGTGAA
GCTCGAGGAGCTTGAACGTTTGCGGGAACGGAAGACGTCGACCGATCTCA
CACCCGCCGCGGTCGCTGCTTCTTCGTCAGCGGCAGCGGAAAAGGTGGAG
AGCATTGCAAAAACAGTGCAGGAGATGGCGTTAGGAGTGGAGGTGGCGAG
TAGGCAGCAAGCAAATTTTGAGAACAGGTATGTTCGTAGAGCAAGCCTTT
GGCTTAAGCTGAATGTTTCGTAGGCACGGCCACCGGTAGCCGTCTCTCAA
TCACCTGATGCTCGTCATTTGATCGTGCCAAAGCCTAGTAAATTTTCTAC
CAGTGATGAGCGCGGCTAATGGTATGGATCGATCCCACCGCCCTAGACTC
GGACCCTGGATGGTTGCCTTTAGGTTTGTTGCCGTGCCTACAACAAGGTA
ACATGTCATACATTGTGCACCAGTGCATGGCTCAAGTCTCGCTCGAACTT
TTGTCACTTCCCGACCGCCTCTCATCTGCCTCTTAGCCTAGAAGAAGTAA
GCGAAACGCTAAACGGGCACGCGTTGAAATTACGCTGTTTGGAGGGGTTG
TGGAGACAGACAGGCACCACCGACATCGAGAAGAACGTGACGGGAGGCGC
CGGCGCCGGCAGCAGCGGCAGCAGCACACCTGACTGGTAGGCGCAGCGCG
GAGAATATTCAGCCTTTCACGCGTGTTTGTGGCGTTCGTGGCTTTCGTAG
GGTCGACACAGCTGTGTTTTTCTTTACGGGTTCTACCTGAGCAATCCCGG
CACGAAACACTATAGCGGTGTCAACTTCTGTTTCCACACGGGACTTTCAT
GTTTCGTCCGGATACGGTGCGAGTTTGATTCCGTAGAGCTTGTGATTCAT
GGTTTGCTGCTGTCGGCAACTATTATAATAGGCACGCTCTTGACAGAAGC
CTCACCTCCCGACCTCCCCATCCCTCGCTTTGAACAGTAGTCGGCAACAC
CGAAATCTCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAAAAACAGCAACACCTTCACGCCGCGGCAATGCCGACAG
AAGAACACGTAGTTGCTGCTCAAGCTGCGCCCGCCTTCCGGACCGGGTTG
AGCGGGCTGTTGAAGCGGTTGGGGTCCAGTTCGCTGTCGTCCGGCCAAAA
GGAGGTGAGACCCTTGGTCAAACGGACAATATCCCAGTGGTCAGTGGGAT
AGCGGGTGGACTCACCGGACGCAACATAAGCTTCGAGTTCACCTCTCGGT
ATGTGGGACCGATTGAGAGACCGAAAGAGCCGCAGTTATCGCGCGCCCCA
GGTGTGAAACGACATACCATACGGCTTCGTGTGTGTTTGTAGTTTACCCC
CCCCCCCCATTTAGGCTCATTTAGGCGGACCCCGTCATTCGCGATCACTT
AAAGTCCGGGACGAAGAGTACCGCGGTCCGTCCAACCATCTATCGCCGTC
TGCCATTACAGTTGCCTGAGTTCGTACCGAATCGCTTCCTCTTGCCCGAG
TCTATGTTCCTTTGGTCTGGTCTGCTGCTCTGTTTTACCGTCACTCTAGT
AATGTCCACGCAGTCGAAAAGCTAAAGCAGTACCATCTACAATTTGTGGC
TTTTTTTGCTTGCGTTATTTTGCCCCATGCAGGCCGGGACCAACGTTGCA
GACAAGGACAACGAAGTAGGACTGGGCACGCCACGACCGCCGGTGGGTCG
GGTCACGGAATCCGAAAAGACTGTGCCGCAGCCGGAGACAGTGGAGTTAC
GCAAGGAGCTCGGAGTAGGTAGTGGTGGGAACGAAAAGCTGCCTCTGGGG
TCCGGGGGCGCAGTACAAGACGATATGGATCAACGAGAGGGCTTGCGTGG
ACAAAAGGATGGCGGCGACAGCAGCAGCAAAGCTGGGAGCAGCGCCTACG
GTAGCAGCATCTATGACATAGTGTCTAGTGGGGAACCTCGGGAGTCTTCC
AGCGGGGAATCTCGGCAACCTGCAACGCTAGCCGAGAGTGAAGAGCAACA
CGGTAGGGGAGGAAAGGACATTCCCTTGTCACCCAGCGGAAACGGTACCA
CCCTCCTCAGCCGAGACGTGGAAACACCTGCTGGCGTGGAAGGGGTGGGG
ACAGCCGAGGACACACCAGGGAAAGCTTCAGCACGGCCGCGGCAGCAGCA
GAAACTGGAGAAGACCGGAGGCGAGGGTGACTGCGAGAGAGATGACGCCC
ATCTAGTCCTGCCGCCAAAGGCAGGGAGCACTGAATCATCGGCCGGTGTA
CCGTGCGCCACGCCGATTGCTACCACTACCGCGGCTCCGACACCAAAGTC
GACAACAACTGTACCGGGAAATCATACCGCCGAAAGACTGCACAGTCGTA
GTGGGAGTGCCGTGGCTGAAGCAACGGCACCGGGAGACCAACGGGCCGCG
AGGGAGCTCGATGAATCGGGTGGCAGCCTCGAGGGGGACAGCGCCCACAG
CAGGTGGTCGCTTCCCGAAAGCCGCGGCATCGGCGGCATCGGTGCCGCTG
GAGGCCTGCACGAGCAGCGTGCCATATGGGCCGGTGGTCAAGAAGATGAC
AGCGAGGGCTTCATTGAGCAGGCGCCGAGCTCAGTGGAGAGCGAGAGCGG
TGGCCCGGGGGAAGACGGCAAGCCTCTGAGCCGGTCACGAGTGGAGAGCT
ATGACCTCCAGCAAGAAACGGTGAGGGGAAGTCGAAGGAAAAACCAAGTG
CGTTTCGAGCTCAACAAACGAGCTGATACGATTCAATCGCACGCAGTAAG
CCAGCTAGTTTTTGTTGCCTAGAGTTCGATTTGCTTGTTGACCGGCTTGC
TACAGGTTTCGATGTTCACGCCCATCATACCTTTACCGCTAATTCCTACA
TCCTCCCGGTGTCCGCACTAGCCATACGGGGGAATATTCTTTGGAGTGTT
TTTCGTGGTTGAAAGGGTTGGCGAGCCCGAAATATCACGCTGAGAGCGTT
GCATACCCCTACCAGGTTTGGCGTTAAGCACCTATACTCCTGGGTACGCT
TCTTCGACGAACGCTGACCTTCAAGGTCTCGATATGGCAGTTGACGGCAT
GACACCACACATGCCACCCCCACCCAGTCCAACTTGAGCACCTGCTCGCT
CGCCGACACATGCGCAGGGAGAGGACTACATGGACCCGTTTTCACCCGAT
AGACCCTCGGCCGCCAGTGATGTGGCAGCGTCCCCTGATGAAAAACGGCC
CAGCGGTGGATCGGGGGTCACCAGTATGACTCCACCGGAGACCGAACCTC
CACCAGAAGCCGTGGTCGGTGACGTGGGACAAAGCAGTGCGGCGGATACG
CCCACGCCCCCCGCGAGTACTACTGGTTCGGCTGCCACACACGGGGGTGG
CGGCGGCAGCCGTTCAGGGTCTCTCCTTGCCGAATGGGCAACGATAAACG
AGTTTATTTTCTCTGATGACGACGAAGACGAGGCAGGAAAAACCGGCGGC
GCGGGACGCGGCACCACCACACCCGAGCGGTCAAGCCAGCAGCACGCCAC
ATCAGTCGACGACCCGAAAGGTATCAACAACGAACCGGGTGTCGGTGAAG
GTGAATCTACGTGTGCTAAAGGGGCATCCGGCGATGAAAGAGCTAGCGGC
GGCCGAAAAGACGGGCGGGACCCAGTCGGCCACCAAGGAGAACGGCCGCG
CGACAAGGGCGGCATCACCAAGGAAGCCTTCGACGACTGGAGCAGCAGCA
GCAGTGACGACGGCAACGACAGCCCTCGGAGAAAAGAACCAGGCAATGAA
GGTACCCGCCATCGCGACCGCCACGAAGCTCTGTTGAACCCGCGTGGCTT
AGCGCAGGGCGAACAACCCGGCGGCAGCGGCGGCGACGGCAGCGACGACG
AAGCACGCTCGCCACCTAACCCCGGGGGAAGACGAGGGGTGGTGGACTCG
GCCTGTGCCACCCCCGCCCCTGGGGCCTGGTCCGCCCCGGACTTCGGGTT
TTCCTCTGACGATGACCTAGATATCGAGTTCTCAGCTTCCGAACGGTCTT
TGGAAAGACCCGCAGGACGGTGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9993:630..5152- >mRNA_E_fasciculatus_S2_contig9993.17974.1 ID=mRNA_E_fasciculatus_S2_contig9993.17974.1|Name=mRNA_E_fasciculatus_S2_contig9993.17974.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2574bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9993:630..5152- (Ectocarpus fasciculatus EfasUO2) ATGGTGACGTCGCGAAAATCTCAGGTCACCAAATCTGCGTCGGACGGACT TGATGGGAGGGAGGATTTGAAACCTCTCGTCAAGAGGCTCGAGGAGCTTG AACGTTTGCGGGAACGGAAGACGTCGACCGATCTCACACCCGCCGCGGTC GCTGCTTCTTCGTCAGCGGCAGCGGAAAAGGTGGAGAGCATTGCAAAAAC AGTGCAGGAGATGGCGTTAGGAGTGGAGGTGGCGAGTAGGCAGCAAGCAA ATTTTGAGAACAGCCTAGAAGAAGTAAGCGAAACGCTAAACGGGCACGCG TTGAAATTACGCTGTTTGGAGGGGTTGTGGAGACAGACAGGCACCACCGA CATCGAGAAGAACGTGACGGGAGGCGCCGGCGCCGGCAGCAGCGGCAGCA GCACACCTGACTGTAGTCGGCAACACCGAAATCTCGAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAACAGCAACA CCTTCACGCCGCGGCAATGCCGACAGAAGAACACGTAGTTGCTGCTCAAG CTGCGCCCGCCTTCCGGACCGGGTTGAGCGGGCTGTTGAAGCGGTTGGGG TCCAGTTCGCTGTCGTCCGGCCAAAAGGAGGCCGGGACCAACGTTGCAGA CAAGGACAACGAAGTAGGACTGGGCACGCCACGACCGCCGGTGGGTCGGG TCACGGAATCCGAAAAGACTGTGCCGCAGCCGGAGACAGTGGAGTTACGC AAGGAGCTCGGAGTAGGTAGTGGTGGGAACGAAAAGCTGCCTCTGGGGTC CGGGGGCGCAGTACAAGACGATATGGATCAACGAGAGGGCTTGCGTGGAC AAAAGGATGGCGGCGACAGCAGCAGCAAAGCTGGGAGCAGCGCCTACGGT AGCAGCATCTATGACATAGTGTCTAGTGGGGAACCTCGGGAGTCTTCCAG CGGGGAATCTCGGCAACCTGCAACGCTAGCCGAGAGTGAAGAGCAACACG GTAGGGGAGGAAAGGACATTCCCTTGTCACCCAGCGGAAACGGTACCACC CTCCTCAGCCGAGACGTGGAAACACCTGCTGGCGTGGAAGGGGTGGGGAC AGCCGAGGACACACCAGGGAAAGCTTCAGCACGGCCGCGGCAGCAGCAGA AACTGGAGAAGACCGGAGGCGAGGGTGACTGCGAGAGAGATGACGCCCAT CTAGTCCTGCCGCCAAAGGCAGGGAGCACTGAATCATCGGCCGGTGTACC GTGCGCCACGCCGATTGCTACCACTACCGCGGCTCCGACACCAAAGTCGA CAACAACTGTACCGGGAAATCATACCGCCGAAAGACTGCACAGTCGTAGT GGGAGTGCCGTGGCTGAAGCAACGGCACCGGGAGACCAACGGGCCGCGAG GGAGCTCGATGAATCGGGTGGCAGCCTCGAGGGGGACAGCGCCCACAGCA GGTGGTCGCTTCCCGAAAGCCGCGGCATCGGCGGCATCGGTGCCGCTGGA GGCCTGCACGAGCAGCGTGCCATATGGGCCGGTGGTCAAGAAGATGACAG CGAGGGCTTCATTGAGCAGGCGCCGAGCTCAGTGGAGAGCGAGAGCGGTG GCCCGGGGGAAGACGGCAAGCCTCTGAGCCGGTCACGAGTGGAGAGCTAT GACCTCCAGCAAGAAACGGGAGAGGACTACATGGACCCGTTTTCACCCGA TAGACCCTCGGCCGCCAGTGATGTGGCAGCGTCCCCTGATGAAAAACGGC CCAGCGGTGGATCGGGGGTCACCAGTATGACTCCACCGGAGACCGAACCT CCACCAGAAGCCGTGGTCGGTGACGTGGGACAAAGCAGTGCGGCGGATAC GCCCACGCCCCCCGCGAGTACTACTGGTTCGGCTGCCACACACGGGGGTG GCGGCGGCAGCCGTTCAGGGTCTCTCCTTGCCGAATGGGCAACGATAAAC GAGTTTATTTTCTCTGATGACGACGAAGACGAGGCAGGAAAAACCGGCGG CGCGGGACGCGGCACCACCACACCCGAGCGGTCAAGCCAGCAGCACGCCA CATCAGTCGACGACCCGAAAGGTATCAACAACGAACCGGGTGTCGGTGAA GGTGAATCTACGTGTGCTAAAGGGGCATCCGGCGATGAAAGAGCTAGCGG CGGCCGAAAAGACGGGCGGGACCCAGTCGGCCACCAAGGAGAACGGCCGC GCGACAAGGGCGGCATCACCAAGGAAGCCTTCGACGACTGGAGCAGCAGC AGCAGTGACGACGGCAACGACAGCCCTCGGAGAAAAGAACCAGGCAATGA AGGTACCCGCCATCGCGACCGCCACGAAGCTCTGTTGAACCCGCGTGGCT TAGCGCAGGGCGAACAACCCGGCGGCAGCGGCGGCGACGGCAGCGACGAC GAAGCACGCTCGCCACCTAACCCCGGGGGAAGACGAGGGGTGGTGGACTC GGCCTGTGCCACCCCCGCCCCTGGGGCCTGGTCCGCCCCGGACTTCGGGT TTTCCTCTGACGATGACCTAGATATCGAGTTCTCAGCTTCCGAACGGTCT TTGGAAAGACCCGCAGGACGGTGA back to top
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