mRNA_E_fasciculatus_S2_contig9991.17973.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9991.17973.1
Unique NamemRNA_E_fasciculatus_S2_contig9991.17973.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.910e-66
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERWNILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPGGG 315
            GKKVVRLEYEGYVPMAELELKKICAQVR+RWN+LKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPGGG
Sbjct:   52 GKKVVRLEYEGYVPMAELELKKICAQVRDRWNVLKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPGGG 156
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV7_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.100e-65
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERWNILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGP 306
            GKKVVRLEYEGYVPMAELELKKICAQVR+RW+ILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGP
Sbjct:    7 GKKVVRLEYEGYVPMAELELKKICAQVRDRWDILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGP 108
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN85_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.320e-49
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERWNILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPGG 312
            GK VVRLEYEGY PMAE EL+KIC Q R++W+I KIA+ HRLGVT V EASVIIAVSSVHR++SLEAV++ I+TLKATVPIW LEVYEGDSRVWKENAEW  GG
Sbjct:   63 GKTVVRLEYEGYAPMAEKELRKICEQARQKWSIEKIAIAHRLGVTAVEEASVIIAVSSVHRRESLEAVQYCIDTLKATVPIWYLEVYEGDSRVWKENAEWSGGG 166
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIT3_PYTOL)

HSP 1 Score: 155 bits (392), Expect = 4.470e-46
Identity = 75/104 (72.12%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPG 309
            GKKVVRLEYEGY+PMAE EL+KIC Q+RE+W +++ IAL HRLGV EV +ASVIIAVSS HR++++EA E+AI+TLKATVPIWK E YEGD+R+WKENAEW  G
Sbjct:   67 GKKVVRLEYEGYIPMAEAELRKICTQIREKWPSVVGIALFHRLGVVEVKQASVIIAVSSPHRREAIEACEYAIDTLKATVPIWKSEQYEGDARMWKENAEWQSG 170
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C047_PYTIN)

HSP 1 Score: 152 bits (383), Expect = 4.590e-45
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEW 300
            GK+VVRLEYEGYVPMA  EL KIC Q+RERW +I+ IAL HRLGV EV +ASVIIAVSS HR++SLEA  FAI+TLKATVPIWK E YEGD RVWKEN EW
Sbjct:   41 GKRVVRLEYEGYVPMARSELLKICGQIRERWPSIVGIALFHRLGVVEVKQASVIIAVSSPHRRESLEACAFAIDTLKATVPIWKREQYEGDERVWKENVEW 141
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BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPF0_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.640e-44
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPG 309
            GKKVVRLEYEGY PMA  EL+KICA VRE+W  ++ +AL HRLGV EV EASVIIAVSS HR+++LEA  FAI+TLKATVPIWK E YEGDSR+WKEN EW  G
Sbjct:   58 GKKVVRLEYEGYTPMAVSELRKICATVREKWPGVVGVALFHRLGVVEVAEASVIIAVSSPHRREALEACAFAIDTLKATVPIWKSEQYEGDSRMWKENVEWEAG 161
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=3 Tax=Phytophthora TaxID=4783 RepID=G4YUD6_PHYSP)

HSP 1 Score: 149 bits (375), Expect = 1.340e-43
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPG 309
            GKKVVRLEYEGY PMA  EL+KIC  +RE+W  ++ +AL HRLGV EV EASVI+AVSS HR+++LEA  FAI+TLKATVPIWK E YEGD+RVWKEN EW  G
Sbjct:   58 GKKVVRLEYEGYTPMAVSELRKICVTIREKWPEVVGVALFHRLGVVEVAEASVIVAVSSPHRREALEACAFAIDTLKATVPIWKSEQYEGDTRVWKENVEWKDG 161
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRE3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.200e-43
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPG 309
            GKKVVRLEYEGY PMA  EL+KICA VRE+W  ++ +AL HRLGV EV EASVIIAVSS HR+++LEA  FAI+TLKATVPIWK E YEGDSR+WKEN EW  G
Sbjct:   58 GKKVVRLEYEGYTPMAVSELRKICATVREKWPGVVGVALFHRLGVVEVAEASVIIAVSSPHRREALEACAFAIDTLKATVPIWKSEQYEGDSRMWKENVEWEAG 161
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R9S9_PHYPN)

HSP 1 Score: 146 bits (369), Expect = 2.540e-43
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEW 300
            GKKVVRLEYEGY PMA  EL+KIC  VRE+W +++ +AL HRLGV EV EASV++AVSS HR+++LEA  FAI+TLKATVPIWK E YEGD+R WKEN EW
Sbjct:   10 GKKVVRLEYEGYTPMAVSELRKICVIVREKWPDVVGVALFHRLGVVEVAEASVVVAVSSPHRREALEACAFAIDTLKATVPIWKSEQYEGDTRTWKENVEW 110
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Match: Molybdopterin (synthase catalytic subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY12_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.940e-43
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 GKKVVRLEYEGYVPMAELELKKICAQVRERW-NILKIALVHRLGVTEVGEASVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEWGPG 309
            GK+V+RLEYEGY PMA  EL+KICAQVR RW  ++ +AL HRLGV EV +ASV++AVSS HR D+L A  FAI+TLKATVPIWK E YEGD+RVWKEN EW  G
Sbjct:   58 GKRVLRLEYEGYEPMARAELRKICAQVRARWPGVVGVALFHRLGVVEVAQASVVVAVSSPHRADALHACAFAIDTLKATVPIWKSEQYEGDARVWKENVEWSSG 161
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9991.17973.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Molybdopterin1.910e-6698.10synthase catalytic subunit n=1 Tax=Ectocarpus sp. ... [more]
Uncharacterized4.100e-6598.04protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Molybdopterin1.320e-4977.88synthase catalytic subunit n=1 Tax=Tribonema minus... [more]
Uncharacterized4.470e-4672.12protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Molybdopterin4.590e-4576.24synthase catalytic subunit n=1 Tax=Pythium insidio... [more]
Molybdopterin1.640e-4473.08synthase catalytic subunit n=1 Tax=Nothophytophtho... [more]
Molybdopterin1.340e-4370.19synthase catalytic subunit n=3 Tax=Phytophthora Ta... [more]
Molybdopterin2.200e-4373.08synthase catalytic subunit n=1 Tax=Nothophytophtho... [more]
Uncharacterized2.540e-4370.30protein n=3 Tax=Phytophthora parasitica TaxID=4792... [more]
Molybdopterin5.940e-4369.23synthase catalytic subunit n=1 Tax=Pythium brassic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9991contigE_fasciculatus_S2_contig9991:2580..4017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score199.1
Seed ortholog evalue1e-48
Seed eggNOG ortholog2880.D8LKV7
Preferred nameMOCS2
Model size315
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006325,GO:0006338,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0030366,GO:0031248,GO:0031974,GO:0031981,GO:0032324,GO:0032991,GO:0034641,GO:0036211,GO:0042278,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0051276,GO:0055086,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902493,GO:1902494,GO:1902562,GO:1990234
Exons3
EggNOG free text desc.molybdopterin synthase activity
EggNOG OGsCOG0314@1,KOG3307@2759
Ec32 ortholog descriptionmolybdopterin synthase
Ec32 orthologEc-11_005720.1
EC2.8.1.12
Cds size315
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842639.6507835-CDS-E_fasciculatus_S2_contig9991:2579..26421696842639.6507835-CDS-E_fasciculatus_S2_contig9991:2579..2642Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9991 2580..2642 -
1696842639.6656609-CDS-E_fasciculatus_S2_contig9991:3324..34981696842639.6656609-CDS-E_fasciculatus_S2_contig9991:3324..3498Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9991 3325..3498 -
1696842639.685584-CDS-E_fasciculatus_S2_contig9991:3939..40171696842639.685584-CDS-E_fasciculatus_S2_contig9991:3939..4017Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9991 3940..4017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9991.17973.1prot_E_fasciculatus_S2_contig9991.17973.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9991 2580..4017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9991.17973.1

>prot_E_fasciculatus_S2_contig9991.17973.1 ID=prot_E_fasciculatus_S2_contig9991.17973.1|Name=mRNA_E_fasciculatus_S2_contig9991.17973.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
GKKVVRLEYEGYVPMAELELKKICAQVRERWNILKIALVHRLGVTEVGEA
SVIIAVSSVHRKDSLEAVEFAINTLKATVPIWKLEVYEGDSRVWKENAEW
GPGGG
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mRNA from alignment at E_fasciculatus_S2_contig9991:2580..4017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9991.17973.1 ID=mRNA_E_fasciculatus_S2_contig9991.17973.1|Name=mRNA_E_fasciculatus_S2_contig9991.17973.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9991:2580..4017- (Ectocarpus fasciculatus EfasUO2)
GGGAAGAAGGTGGTCCGCCTGGAGTATGAGGGCTACGTGCCGATGGCGGA
GCTCGAGCTCAAGAAAATCTGTGCTCAGGTAACACATTTACGCAGAAAAG
CACCACCCCCCCCCCCCCCCAGCGCACGCGCGCCGAGAGCCCAGAAGGAG
TGAGAAACATCGGTCGCGTGTGTTCGTGTGCAGGGAAGTCGTGAACATAC
ATTGCCGACGAGGTTTTGATCAAGTTGTTTGCTTGCTTCCCTTCCTTCCC
TCGACTTACTGACCAAACCCCCATGCCCATCCCACGTCACGCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCGGGGGCAAGGGGGGAAGGACCCCAAAAT
CACCCGCCGCCCCCCCCCCCGGGGCCGGGGGGGGGGGGGGGGGGGGGGGN
NNNNNNNNNTTTTTTTTTTTTTTCAAGAAAAAAAAGGAAAAAGAGGTTTT
GGGGTGACTGGGGTTCAGAGGTGTGCTTTTCCCATCCCCCCCCCCCCCCC
CCCCCCCCCTGCCCTGTAGGTGCGAGAAAGGTGGAACATCCTGAAGATCG
CCCTGGTGCACCGCCTCGGAGTGACGGAGGTCGGGGAGGCGAGCGTGATC
ATCGCCGTGTCGTCTGTGCACAGGAAGGACTCCCTGGAGGCCGTCGAGTT
CGCGATCAACACCCTCAAGGCCACCGTCCCGATCTGGAAGCTGGTGAGTT
GTTTTCGATCACCCGTTTTGTGCTTGAGAATCTCGGCCCAAGGTTGATTC
GTAGCGGTTAATGGCCTGACATTTATGCTGATTGTTTTTTGTTTTGTTTT
TTCTCGTTTTAGTTCCATTGTTTCTGTCGGTTGTTGTTCTTTCCCCGCCA
TTCTCGCTTCAAGTTCAAGCGTCTTTTTTGTTATTTTGTGTTGCCTAGCT
CTGTTCCAGCAGACGTTTTTCTTTCTCGTCCGGACCGCTTTGGATATTTT
GGAACTCCCGCATGCGCCTTCGCACGCACGCTCTGCGTGTTTGGTAGGGT
GGGCCTATCGATATCTTTCCCGAAATGGCGAAACCTCAGCATGTTATTTT
ATTGCTTGTTTTCCTTTGGTAACATACGCATGCCTCTGCGCGGAGGTATC
CGTGGGTCGTTGTTGTCTTTTGTATTATTTCGTTTTTTTCTTGGTACCGG
CGGCACCCGGCACGAGCTGCTGGTTGCTCTTTCTGACGGTACTTCGTTGT
CGAGTTTTTGTTTCTTTTTTTCTCACTCTGGCGCTCTCTCTCACAGACTC
TCTCTCTCTCTCTCTCTCGCTGACACAATCTCTCTGTTCGACTCTCACAC
ACTGTTATATCTCTTTCACTCTCTCATATGTACGCATGACTCTCTGACTC
TCCCCCCCTTCCCCCCGTCTCTCAGGAAGTATACGAGGGCGACAGCCGGG
TGTGGAAGGAAAACGCAGAGTGGGGGCCAGGGGGCGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9991:2580..4017-

>mRNA_E_fasciculatus_S2_contig9991.17973.1 ID=mRNA_E_fasciculatus_S2_contig9991.17973.1|Name=mRNA_E_fasciculatus_S2_contig9991.17973.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9991:2580..4017- (Ectocarpus fasciculatus EfasUO2)
GGGAAGAAGGTGGTCCGCCTGGAGTATGAGGGCTACGTGCCGATGGCGGA
GCTCGAGCTCAAGAAAATCTGTGCTCAGGTGCGAGAAAGGTGGAACATCC
TGAAGATCGCCCTGGTGCACCGCCTCGGAGTGACGGAGGTCGGGGAGGCG
AGCGTGATCATCGCCGTGTCGTCTGTGCACAGGAAGGACTCCCTGGAGGC
CGTCGAGTTCGCGATCAACACCCTCAAGGCCACCGTCCCGATCTGGAAGC
TGGAAGTATACGAGGGCGACAGCCGGGTGTGGAAGGAAAACGCAGAGTGG
GGGCCAGGGGGCGGG
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