mRNA_E_fasciculatus_S2_contig993.17922.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig993.17922.1
Unique NamemRNA_E_fasciculatus_S2_contig993.17922.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 2.440e-113
Identity = 194/224 (86.61%), Postives = 204/224 (91.07%), Query Frame = 1 
Query:    1 MCKSSQPQGSSEVAPVAMKVPTNDSSYDLVKPSATIPDDEQPHQEVIAHDEASGIIVFGSFVAGALVGVVICAPAFVVLLFGAGAAAVTKSDSKVGKFSRKVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGIVDNVKTRARSLWDQVDKRTAPVGHASIQAAQGQGPSQVTDGTQIPFDGAADAYATESSSSSS-SKGGKPKSFDA 669
            MCKSSQPQGSSE APVAM+VPTND SYDL KP A I D+EQPHQEVIAHDEASGIIVFGSF+AGALVGVVICAPAFVVLLFGAGAAA+TKSDSKVGKFSRKVGKVSSD+LLAVFR AREYNHKHKLTDKAKVG K+AAG V+ K+R+LGIVDNVK RA SLWDQVDKRTAP G ASIQAAQGQ  SQVTDGTQIPFDGA DAY T+SSSSSS SKG KPKSFDA
Sbjct:    1 MCKSSQPQGSSEAAPVAMEVPTND-SYDLAKPCA-ISDNEQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 222
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BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.980e-49
Identity = 112/199 (56.28%), Postives = 140/199 (70.35%), Query Frame = 1 
Query:  112 DDEQPH---QEVIAHDEASGIIVFGSFVAGALVGVVIC------APAFVVLLFGAGAAAVTKSDSKVGKFSRKVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGIVDNVKTRARSLWDQVDKRTAPVGHASIQAAQGQGP-SQVTDGTQIPFDGAADAYATESSSSSSSKGGKP---KSFDA 669
            D EQ H   +  +AHDE+S IIV GSFVAGALVG ++C      AP  VVLL GAGAA  TKSDSK G+ SR+VGK + DV LA+FR  RE+N+K++LT K ++  ++AAG V A+V+RLGI D VKTRARSLW+QVDKRTAP G   I+AAQGQ   S + +  Q+ FD AADA  ++S SSSSS+  K    + FDA
Sbjct:   26 DTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPPIRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
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BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.140e-33
Identity = 81/147 (55.10%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:  112 DDEQPH---QEVIAHDEASGIIVFGSFVAGALVGVVICA------PAFVVLLFGAGAAAVTKSDSKVGKF----------SRKVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGIVDNVKTRARSLWDQV 495
            D EQ H   +  +AHDE+S II+ GSFVAGAL+G +ICA      P  VVLL GAGAA  T SDS+VGKF          SR VGK +SDV LA+FR  RE+N+K++L DK K+  ++AA  V A+V+R+GI D VKTRARSLW+QV
Sbjct:   26 DTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
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BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.190e-33
Identity = 94/202 (46.53%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:  115 DEQPHQE--VIAHDEASGIIVFGSFVAGALVGVVIC------APAFVVLLFGA------------GAAAVTKSDSKVGKFSRKVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGIVDNVKTRARSLWDQVDKRTAPVGHAS--IQAAQGQGP-SQVTDGTQIPFDGAADAYATESSSSSSSKGGK 651
            ++Q H++  ++ HDE+S I + GSFVAGA VG +IC      AP   +LL GA             AA VTKSDSK G  SR+ G   SDVLLA+FR  RE+N  ++LTDK K  V++AAG V  +++++GI D+V TRA SLWDQVDKRTAP    S  +  AQGQ   S   +  Q  FD A DA  +   S SSS+  K
Sbjct:   37 EQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEK 238
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.160e-15
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  280 KVGKFSRKVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGIVDNVKTRARSLWDQVDK 501
            KVG  SR+ G  +SDVLLA+ R  RE N   +L+DK KV V++AA  V A+++++GI D+V TRARSLWDQVDK
Sbjct:   20 KVGTISRRAGNFTSDVLLALLRVVREINRTCQLSDKVKVTVQEAARKVQAEMQKVGICDHVMTRARSLWDQVDK 93
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig993.17922.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.440e-11386.61protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8... [more]
Uncharacterized1.980e-4956.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.140e-3355.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.190e-3346.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.160e-1556.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig993contigE_fasciculatus_S2_contig993:6766..10845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2333
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003280.1
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842635.3899527-CDS-E_fasciculatus_S2_contig993:6765..70471696842635.3899527-CDS-E_fasciculatus_S2_contig993:6765..7047Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 6766..7047 +
1696842635.3998485-CDS-E_fasciculatus_S2_contig993:7728..78331696842635.3998485-CDS-E_fasciculatus_S2_contig993:7728..7833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 7729..7833 +
1696842635.4086971-CDS-E_fasciculatus_S2_contig993:8266..83801696842635.4086971-CDS-E_fasciculatus_S2_contig993:8266..8380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 8267..8380 +
1696842635.4172473-CDS-E_fasciculatus_S2_contig993:9013..91841696842635.4172473-CDS-E_fasciculatus_S2_contig993:9013..9184Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 9014..9184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842635.425973-UTR-E_fasciculatus_S2_contig993:9184..108451696842635.425973-UTR-E_fasciculatus_S2_contig993:9184..10845Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig993 9185..10845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig993.17922.1prot_E_fasciculatus_S2_contig993.17922.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig993 6766..9184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig993.17922.1

>prot_E_fasciculatus_S2_contig993.17922.1 ID=prot_E_fasciculatus_S2_contig993.17922.1|Name=mRNA_E_fasciculatus_S2_contig993.17922.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=224bp
MCKSSQPQGSSEVAPVAMKVPTNDSSYDLVKPSATIPDDEQPHQEVIAHD
EASGIIVFGSFVAGALVGVVICAPAFVVLLFGAGAAAVTKSDSKVGKFSR
KVGKVSSDVLLAVFRFAREYNHKHKLTDKAKVGVKDAAGTVSAKVRRLGI
VDNVKTRARSLWDQVDKRTAPVGHASIQAAQGQGPSQVTDGTQIPFDGAA
DAYATESSSSSSSKGGKPKSFDA*
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mRNA from alignment at E_fasciculatus_S2_contig993:6766..10845+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig993.17922.1 ID=mRNA_E_fasciculatus_S2_contig993.17922.1|Name=mRNA_E_fasciculatus_S2_contig993.17922.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig993:6766..10845+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCAAGTCCAGCCAACCACAGGGAAGCAGCGAGGTGGCCCCGGTAGC
GATGAAGGTCCCGACGAACGACTCATCATATGACCTCGTCAAGCCTTCTG
CGACGATACCGGACGACGAGCAACCGCACCAGGAGGTTATCGCACACGAC
GAGGCCAGCGGGATCATCGTGTTCGGCTCCTTCGTTGCAGGTGCACTGGT
GGGGGTAGTGATCTGCGCGCCTGCCTTTGTGGTGCTACTCTTCGGGGCAG
GCGCGGCGGCCGTGACCAAGTCAGACAGCAAGGTGGGAAGTTGAGCATAC
AGAGCTGTGCTGTCTAGACTAGACTTCAAGTCTGTGTGTAGCGCTCTTGT
GTGTTTCTGTTGATTCGATGCGTCCAAGCGAGTTGGACTTTGCTGCTCAT
CTGGCAGAGCAGCTGTAGTGGCAGCGTGTATCCCCTTTTGGAAAATATAC
TCCCGCAGCAGTCTACAGCAGTGACAGGATTTCTCCATCTCGGCTCCGGA
GAAGGTGGCTTTTGTGCACAGCGCAGTGCAAATGTAGGCTTTGCTGGTGG
CAGGAAGAATATCTTCTTTCCCAAGTTCCGCCGCAAAACAGGAAAAAAGC
CGTACATGGCGTGGACAATCCCCCGGAGCGGTGGTGGGCCTCCCGCCAGG
CACGAAACATGACACCCTCATAACCGTTGAAGATGGAAGGGGTTGGTGGC
GCGCCGTCTCCAGTCATGCGCGTTTCTGACCCTTTTCCGCGTTTCGCCAT
CGTACTACACGTTGAAGGTCTCTTTGCGGCTTCGGTCGTGCGATGGGGGT
TCTCCTTTGACGGTACTGTAGTTAGCCTGGCACCCTTCCTTCATTTAAAA
CTGATGGCGATGTCCTCAAAGAGGTGAAACCATCACTTTGCTGCTCTCTC
AACAACTGACCCCCCTCTTGCCAACGCTACTCGGTTTGTGCTCCGTTCCC
TTTCCCGTCGCAGGTCGGCAAGTTTTCCCGCAAAGTGGGCAAGGTGTCGT
CTGACGTTCTCCTTGCCGTGTTCAGGTTCGCCAGGGAGTACAACCACAAG
CACAAGTTGACGGACAAGGTGAGCACCGCGTCTCGACCCTGTCTATGTAT
CTGTAGAGTCCGTTCTGCGTGGTTCCAAGGAATGTTCTGTTTTTTTTTCA
GGTTCCTCAACTGCGCTTCGTTGTATTTGTCCTCTGCGTTCACAAGAACT
TCAACATGGAGAACAAAAGCCCACTCCCCTACGAACGGGGGCTACTGGTG
CCCGATCGGGTTGATTCAAATGCTCCTCTCGTCGTCATTGTTTTGTAAAA
CCGTTCCCCTGCTTTACCCGCAAAGCAACACTCCGATAGCTTGTCTCAAC
GACAACTTTCTTTGCGCGCGACAGATTTGCTTATCTGACTGTTGCCATGC
ACATCACCAGACTACAGCGGTAGAAGTAGTGGTGGAATCCCAGTCCACCG
GTGTTCTAATATTCACCTAATCGTTAATGTTGTTGGTGTCTTGTTTCCCA
GGCGAAGGTAGGTGTGAAAGATGCGGCGGGGACGGTGAGCGCCAAGGTGC
GGAGGCTCGGCATCGTCGACAACGTTAAGACCAGGGCAAGATCTCTTTGG
GATCAGGTCGACAAGGTCAGTTGCTAGCGACGTTGTGTGATGTCGGAGGT
GATTTCAGAGTTGTTGCTCTGCTACCTTCTCTCGTCTCTAGCAGCTCTGA
ACGTTCAACGCTAGACTGTCGGAAACCATGGACTCTTTGACCAATAACCC
TCATCAAGTGTTTGAGCTTGACCGCTTGTGGGCTTGGCTTCTTCGCTCGC
GAAACCGTTCGAGGAACTTCGTAGACGACTCAAACACATATTATTTCACG
TAAAGGTAAATCAAACTTGCAATTTTTCTCCCGGCTTTCGCCCACCATGT
ACGCTGCGACTGTTTCTTGTTCCGGAGTATATCTGGTGGTTTTGCGCTTC
TCCTGTTGGCGGCTTGTTTGTGGTGGTTCTACCGGCGCGGGCTTGAGCAC
TAATGAACTCTCGAAAACACTTCGAAACACGGGAATGCAACAATGAGTTT
GTGGCCGGAGCCATGGACAACGAGAACTTGCGAAAGGGCGACGAGGTGTT
GGCATGCGCGAATGCACCTTCCCTCGCCCTTTATTTTCCTCCTCGATATA
CTCTCCCGCCTCAACCGCCACTTTGCCCTCGCATCTCAGACGAATCACCT
ACCCCCCCCCCTGTTTCCGTGTCGCCAAATCTCCAATCCGTTGTGCAGCG
GACTGCTCCTGTAGGTCATGCTTCTATTCAGGCAGCACAAGGGCAAGGCC
CAAGCCAGGTTACCGACGGTACCCAGATTCCTTTCGACGGTGCCGCGGAT
GCGTACGCAACAGAATCATCTTCCTCGTCGTCCTCCAAAGGCGGGAAGCC
GAAGTCCTTCGATGCCTGAACTTCATCGCTCCACAGCGTCCACCGAGCAC
CGGACATGTTCCCCGGCCGAAGTGCTGTGTTAGAGTAGGCTTCACGCTGT
CACCCTGATTGCGACGGTCGACGCTCTTGGTTGTCGCTGCTCGTCTCGCG
CTATCGCTCTGAGTGTCCCGTTTGTAAATAAATGTAGCTTGCTGGGTCGG
TCAAGTCCTTTAAGGGCCTCCTATTCCAGTAGGAAAAGTGTCGTCTCTGC
AACCTTCAGGAGGCTTGCTAGCGCCCGCGTGATGCTAATGCGAGTGGACG
GACTGATGGTGCACGCACAACAACGAGTGGAGAGGGGACATAGCTCGTGA
CAGGCGGGGTATATTCCTGCTTTCCTCGAAAGGAGTGTAGAGTACCGCGA
ATCGTTGTTCAATTTCATTTCCAGTGCGTTATGCCTTCCCTCCCGAAGCT
GATGTGTGTGTTTCTGCTATGCGTGTCGTCCCTAGCCCTGGAAAACTTTT
CCAGAACGACAGCGTAGGCAGTACTCAGGAACATTCGACATTTTTTGCGG
TTCTGGCCTTGCTACTGGTTGAACGTGGTGTTCTAGTAGACCACCAGCTA
CTGAGAAACCCTGGACGTGTGTCGGTTGCCATTCATGTGATACTCCCTGC
CCTCATCCGCATGGGCCTAACCCTGCCTGACTTGTGTAGCACATTGAACT
TGCGCGATAGAAAGTAAAGGTTGTGAATTTCTTGCGCGATGCGAGCGAAG
GTTTTGATAAGAATTTCCCTCATCTTGGTTGGGTGTGACTTTCTTGTTTT
TGTGACTGCGAGGTCATGGTTGAATGGAGAATGAATCCTGCGTCTTCAGC
GTGCCGTACAAATGCTCAGCTCTGTTGATGGGGGTTGAAGTATGTGTAGA
ATCGACTCAACCTGTGCTTGTACAGGTGTCTTTGATTGGGTATTTCCATC
ATCGCAGTTTGCACTTCCACGATTCCGGAGCATTTTGGAATTCCCAAGAA
CCAAAAAAGTCGACAATGGACACCGGATGCCGCAACTTCGCTCTTGCGAA
GAACGCGAAAGTACTCGTACACAAAGGTGTAAGAGGTATGGTTCCGTATC
GAGACTCGCTGAGACGGGCTGACGGAGGAAGACCAACGAACGCTGCAGAA
ATAGTATCACCATTCCGGCAGCCGTAACGGATGGGCACGTCAAGTACAAA
TATCAAGTCACCCTCGGAGCAAGAGCAAGTAAATGTTGAGAACCACGATG
ACTTCCGAAACCCCTTTCTTTATGTTGAGGATTCTTCCTGGGGGGTTGAG
TTGCGTGATACACGACTTCCCCAACCTCCTCCGCGCCCCGAAACGCCATG
CACGCATGCTCCAAAAATCGAGCCAGCAAATTGTCAAGAGGTTGTCACGC
TCCGAAAGTCTGGGAAGAGAGATTGAAAGGCAACCGTAGATGATTTCCGG
GTTTTGGGCGAGGCTGGGAAGAGTTCCCGTGAGAGGTGTGGACATCTTTA
CAACTGCTGAGCTGTCGTTGAGGGTGCCGCGGGAAGTCGTTTCGTATGTA
CTTCATGTCATCATGTCGCCACTCAATCGGAATTCGTTCATTGAATTGAA
TGGAAGCGATAGCGTAGCTTTTTCAGGGCCTGACGGCGATGGGAAAAAGC
GTATCCAAGAAGAACAAAGGAAAGCAGCAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig993:6766..10845+

>mRNA_E_fasciculatus_S2_contig993.17922.1 ID=mRNA_E_fasciculatus_S2_contig993.17922.1|Name=mRNA_E_fasciculatus_S2_contig993.17922.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig993:6766..10845+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCAAGTCCAGCCAACCACAGGGAAGCAGCGAGGTGGCCCCGGTAGC
GATGAAGGTCCCGACGAACGACTCATCATATGACCTCGTCAAGCCTTCTG
CGACGATACCGGACGACGAGCAACCGCACCAGGAGGTTATCGCACACGAC
GAGGCCAGCGGGATCATCGTGTTCGGCTCCTTCGTTGCAGGTGCACTGGT
GGGGGTAGTGATCTGCGCGCCTGCCTTTGTGGTGCTACTCTTCGGGGCAG
GCGCGGCGGCCGTGACCAAGTCAGACAGCAAGGTCGGCAAGTTTTCCCGC
AAAGTGGGCAAGGTGTCGTCTGACGTTCTCCTTGCCGTGTTCAGGTTCGC
CAGGGAGTACAACCACAAGCACAAGTTGACGGACAAGGCGAAGGTAGGTG
TGAAAGATGCGGCGGGGACGGTGAGCGCCAAGGTGCGGAGGCTCGGCATC
GTCGACAACGTTAAGACCAGGGCAAGATCTCTTTGGGATCAGGTCGACAA
GCGGACTGCTCCTGTAGGTCATGCTTCTATTCAGGCAGCACAAGGGCAAG
GCCCAAGCCAGGTTACCGACGGTACCCAGATTCCTTTCGACGGTGCCGCG
GATGCGTACGCAACAGAATCATCTTCCTCGTCGTCCTCCAAAGGCGGGAA
GCCGAAGTCCTTCGATGCCTGA
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